Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17755

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17745 and CA264_17750 are separated by 12 nucleotidesCA264_17750 and CA264_17755 are separated by 147 nucleotidesCA264_17755 and CA264_17760 are separated by 152 nucleotides CA264_17745: CA264_17745 - TetR family transcriptional regulator, at 4,129,225 to 4,129,836 _17745 CA264_17750: CA264_17750 - hypothetical protein, at 4,129,849 to 4,130,259 _17750 CA264_17755: CA264_17755 - ABC transporter, at 4,130,407 to 4,132,191 _17755 CA264_17760: CA264_17760 - leucine dehydrogenase, at 4,132,344 to 4,133,444 _17760 Position (kb) 4130 4131 4132 4133Strain fitness (log2 ratio) -1 0 1 2 3at 4129.484 kb on - strand, within CA264_17745at 4129.505 kb on - strand, within CA264_17745at 4129.613 kb on - strand, within CA264_17745at 4129.792 kb on + strandat 4129.793 kb on - strandat 4129.850 kb on + strandat 4129.850 kb on + strandat 4129.851 kb on - strandat 4129.865 kb on + strandat 4129.865 kb on + strandat 4129.865 kb on + strandat 4129.865 kb on + strandat 4129.874 kb on - strandat 4129.894 kb on + strand, within CA264_17750at 4129.895 kb on - strand, within CA264_17750at 4129.967 kb on + strand, within CA264_17750at 4130.059 kb on + strand, within CA264_17750at 4130.061 kb on + strand, within CA264_17750at 4130.062 kb on - strand, within CA264_17750at 4130.062 kb on - strand, within CA264_17750at 4130.062 kb on - strand, within CA264_17750at 4130.237 kb on - strandat 4130.237 kb on - strandat 4130.283 kb on + strandat 4130.283 kb on + strandat 4130.284 kb on - strandat 4130.291 kb on - strandat 4130.304 kb on + strandat 4130.308 kb on + strandat 4130.309 kb on - strandat 4130.362 kb on + strandat 4130.363 kb on - strandat 4130.469 kb on + strandat 4130.565 kb on + strandat 4130.566 kb on - strandat 4130.730 kb on + strand, within CA264_17755at 4130.731 kb on - strand, within CA264_17755at 4130.790 kb on - strand, within CA264_17755at 4131.343 kb on + strand, within CA264_17755at 4131.455 kb on + strand, within CA264_17755at 4131.455 kb on + strand, within CA264_17755at 4131.514 kb on + strand, within CA264_17755at 4131.515 kb on - strand, within CA264_17755at 4131.515 kb on - strand, within CA264_17755at 4131.515 kb on - strand, within CA264_17755at 4131.614 kb on + strand, within CA264_17755at 4131.618 kb on - strand, within CA264_17755at 4131.676 kb on - strand, within CA264_17755at 4131.676 kb on - strand, within CA264_17755at 4131.690 kb on - strand, within CA264_17755at 4131.690 kb on - strand, within CA264_17755at 4131.690 kb on - strand, within CA264_17755at 4131.736 kb on - strand, within CA264_17755at 4131.818 kb on + strand, within CA264_17755at 4131.842 kb on + strand, within CA264_17755at 4131.851 kb on + strand, within CA264_17755at 4131.852 kb on - strand, within CA264_17755at 4131.852 kb on - strand, within CA264_17755at 4131.853 kb on + strand, within CA264_17755at 4131.854 kb on - strand, within CA264_17755at 4131.996 kb on - strand, within CA264_17755at 4131.996 kb on - strand, within CA264_17755at 4131.996 kb on - strand, within CA264_17755at 4132.044 kb on + strandat 4132.045 kb on - strandat 4132.045 kb on - strandat 4132.045 kb on - strandat 4132.113 kb on + strandat 4132.114 kb on - strandat 4132.143 kb on + strandat 4132.146 kb on - strandat 4132.146 kb on - strandat 4132.146 kb on - strandat 4132.152 kb on - strandat 4132.160 kb on - strandat 4132.164 kb on - strandat 4132.317 kb on + strandat 4132.341 kb on + strandat 4132.342 kb on - strandat 4132.511 kb on + strand, within CA264_17760at 4132.512 kb on - strand, within CA264_17760at 4132.579 kb on - strand, within CA264_17760at 4132.707 kb on + strand, within CA264_17760at 4132.708 kb on - strand, within CA264_17760at 4132.708 kb on - strand, within CA264_17760at 4132.777 kb on + strand, within CA264_17760at 4132.833 kb on + strand, within CA264_17760at 4132.838 kb on + strand, within CA264_17760at 4132.838 kb on + strand, within CA264_17760at 4132.838 kb on + strand, within CA264_17760at 4132.843 kb on - strand, within CA264_17760at 4132.843 kb on - strand, within CA264_17760at 4132.843 kb on - strand, within CA264_17760at 4132.988 kb on + strand, within CA264_17760at 4133.025 kb on + strand, within CA264_17760at 4133.058 kb on + strand, within CA264_17760at 4133.075 kb on + strand, within CA264_17760at 4133.076 kb on - strand, within CA264_17760at 4133.076 kb on - strand, within CA264_17760at 4133.076 kb on - strand, within CA264_17760at 4133.076 kb on - strand, within CA264_17760at 4133.079 kb on + strand, within CA264_17760at 4133.080 kb on - strand, within CA264_17760

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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4,129,484 - CA264_17745 0.42 +0.1
4,129,505 - CA264_17745 0.46 +1.0
4,129,613 - CA264_17745 0.63 +0.4
4,129,792 + +0.5
4,129,793 - -0.0
4,129,850 + -0.4
4,129,850 + -0.3
4,129,851 - -0.6
4,129,865 + -0.1
4,129,865 + +1.1
4,129,865 + -0.4
4,129,865 + -0.0
4,129,874 - +0.4
4,129,894 + CA264_17750 0.11 +0.4
4,129,895 - CA264_17750 0.11 +0.0
4,129,967 + CA264_17750 0.29 -0.5
4,130,059 + CA264_17750 0.51 +1.4
4,130,061 + CA264_17750 0.52 +0.6
4,130,062 - CA264_17750 0.52 -0.8
4,130,062 - CA264_17750 0.52 -1.6
4,130,062 - CA264_17750 0.52 -0.0
4,130,237 - -0.3
4,130,237 - +0.3
4,130,283 + +0.8
4,130,283 + +0.4
4,130,284 - +1.3
4,130,291 - +0.7
4,130,304 + +3.3
4,130,308 + -1.0
4,130,309 - +0.1
4,130,362 + +2.0
4,130,363 - +1.0
4,130,469 + +0.4
4,130,565 + +0.3
4,130,566 - +2.0
4,130,730 + CA264_17755 0.18 +0.4
4,130,731 - CA264_17755 0.18 +0.6
4,130,790 - CA264_17755 0.21 +1.3
4,131,343 + CA264_17755 0.52 +0.8
4,131,455 + CA264_17755 0.59 -0.4
4,131,455 + CA264_17755 0.59 +1.2
4,131,514 + CA264_17755 0.62 +0.6
4,131,515 - CA264_17755 0.62 -0.8
4,131,515 - CA264_17755 0.62 +0.6
4,131,515 - CA264_17755 0.62 +0.5
4,131,614 + CA264_17755 0.68 +1.2
4,131,618 - CA264_17755 0.68 +1.1
4,131,676 - CA264_17755 0.71 +0.4
4,131,676 - CA264_17755 0.71 -1.0
4,131,690 - CA264_17755 0.72 -0.0
4,131,690 - CA264_17755 0.72 +1.1
4,131,690 - CA264_17755 0.72 +1.4
4,131,736 - CA264_17755 0.74 +0.4
4,131,818 + CA264_17755 0.79 +0.6
4,131,842 + CA264_17755 0.80 +1.1
4,131,851 + CA264_17755 0.81 +0.3
4,131,852 - CA264_17755 0.81 +1.0
4,131,852 - CA264_17755 0.81 -0.0
4,131,853 + CA264_17755 0.81 +1.1
4,131,854 - CA264_17755 0.81 -0.2
4,131,996 - CA264_17755 0.89 +0.9
4,131,996 - CA264_17755 0.89 -0.4
4,131,996 - CA264_17755 0.89 +1.9
4,132,044 + +0.1
4,132,045 - -0.2
4,132,045 - +0.7
4,132,045 - -0.0
4,132,113 + +1.3
4,132,114 - +1.0
4,132,143 + -0.6
4,132,146 - -0.0
4,132,146 - +0.2
4,132,146 - -0.6
4,132,152 - +0.2
4,132,160 - -0.2
4,132,164 - +1.9
4,132,317 + -0.6
4,132,341 + +1.5
4,132,342 - -1.0
4,132,511 + CA264_17760 0.15 -0.4
4,132,512 - CA264_17760 0.15 -0.0
4,132,579 - CA264_17760 0.21 +0.7
4,132,707 + CA264_17760 0.33 +0.6
4,132,708 - CA264_17760 0.33 +0.5
4,132,708 - CA264_17760 0.33 +1.3
4,132,777 + CA264_17760 0.39 +0.7
4,132,833 + CA264_17760 0.44 +2.0
4,132,838 + CA264_17760 0.45 +0.3
4,132,838 + CA264_17760 0.45 +0.9
4,132,838 + CA264_17760 0.45 +0.8
4,132,843 - CA264_17760 0.45 +0.8
4,132,843 - CA264_17760 0.45 +0.7
4,132,843 - CA264_17760 0.45 +0.5
4,132,988 + CA264_17760 0.58 +2.0
4,133,025 + CA264_17760 0.62 +0.7
4,133,058 + CA264_17760 0.65 +0.6
4,133,075 + CA264_17760 0.66 +0.4
4,133,076 - CA264_17760 0.66 +1.2
4,133,076 - CA264_17760 0.66 +0.4
4,133,076 - CA264_17760 0.66 +1.1
4,133,076 - CA264_17760 0.66 +1.3
4,133,079 + CA264_17760 0.67 -0.0
4,133,080 - CA264_17760 0.67 +0.5

Or see this region's nucleotide sequence