Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17460

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17455 and CA264_17460 are separated by 39 nucleotidesCA264_17460 and CA264_17465 are separated by 273 nucleotidesCA264_17465 and CA264_17470 are separated by 104 nucleotides CA264_17455: CA264_17455 - hypothetical protein, at 4,068,047 to 4,069,420 _17455 CA264_17460: CA264_17460 - hypothetical protein, at 4,069,460 to 4,070,974 _17460 CA264_17465: CA264_17465 - hypothetical protein, at 4,071,248 to 4,071,571 _17465 CA264_17470: CA264_17470 - hypothetical protein, at 4,071,676 to 4,072,308 _17470 Position (kb) 4069 4070 4071Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4068.485 kb on + strand, within CA264_17455at 4068.485 kb on + strand, within CA264_17455at 4068.485 kb on + strand, within CA264_17455at 4068.486 kb on - strand, within CA264_17455at 4068.570 kb on + strand, within CA264_17455at 4068.570 kb on + strand, within CA264_17455at 4068.571 kb on - strand, within CA264_17455at 4068.571 kb on - strand, within CA264_17455at 4068.651 kb on - strand, within CA264_17455at 4068.651 kb on - strand, within CA264_17455at 4068.651 kb on - strand, within CA264_17455at 4068.694 kb on + strand, within CA264_17455at 4068.729 kb on + strand, within CA264_17455at 4068.730 kb on - strand, within CA264_17455at 4068.828 kb on + strand, within CA264_17455at 4068.828 kb on + strand, within CA264_17455at 4068.900 kb on + strand, within CA264_17455at 4068.991 kb on + strand, within CA264_17455at 4068.992 kb on - strand, within CA264_17455at 4069.013 kb on + strand, within CA264_17455at 4069.163 kb on - strand, within CA264_17455at 4069.212 kb on - strand, within CA264_17455at 4069.336 kb on + strandat 4069.337 kb on - strandat 4069.338 kb on + strandat 4069.339 kb on - strandat 4069.339 kb on - strandat 4069.339 kb on - strandat 4069.339 kb on - strandat 4069.339 kb on - strandat 4069.339 kb on - strandat 4069.358 kb on + strandat 4069.358 kb on + strandat 4069.358 kb on + strandat 4069.358 kb on + strandat 4069.382 kb on - strandat 4069.386 kb on - strandat 4069.396 kb on - strandat 4069.404 kb on + strandat 4069.405 kb on - strandat 4069.442 kb on + strandat 4069.482 kb on - strandat 4069.519 kb on - strandat 4069.574 kb on - strandat 4069.810 kb on + strand, within CA264_17460at 4069.835 kb on + strand, within CA264_17460at 4069.869 kb on + strand, within CA264_17460at 4069.874 kb on - strand, within CA264_17460at 4069.934 kb on + strand, within CA264_17460at 4069.948 kb on - strand, within CA264_17460at 4069.968 kb on + strand, within CA264_17460at 4069.968 kb on + strand, within CA264_17460at 4069.969 kb on - strand, within CA264_17460at 4070.019 kb on - strand, within CA264_17460at 4070.019 kb on - strand, within CA264_17460at 4070.056 kb on - strand, within CA264_17460at 4070.069 kb on + strand, within CA264_17460at 4070.069 kb on + strand, within CA264_17460at 4070.078 kb on + strand, within CA264_17460at 4070.078 kb on + strand, within CA264_17460at 4070.079 kb on - strand, within CA264_17460at 4070.150 kb on + strand, within CA264_17460at 4070.258 kb on + strand, within CA264_17460at 4070.258 kb on + strand, within CA264_17460at 4070.258 kb on + strand, within CA264_17460at 4070.259 kb on - strand, within CA264_17460at 4070.265 kb on + strand, within CA264_17460at 4070.265 kb on + strand, within CA264_17460at 4070.265 kb on + strand, within CA264_17460at 4070.266 kb on - strand, within CA264_17460at 4070.266 kb on - strand, within CA264_17460at 4070.337 kb on - strand, within CA264_17460at 4070.379 kb on + strand, within CA264_17460at 4070.379 kb on + strand, within CA264_17460at 4070.380 kb on - strand, within CA264_17460at 4070.382 kb on + strand, within CA264_17460at 4070.382 kb on + strand, within CA264_17460at 4070.382 kb on + strand, within CA264_17460at 4070.382 kb on + strand, within CA264_17460at 4070.383 kb on - strand, within CA264_17460at 4070.383 kb on - strand, within CA264_17460at 4070.383 kb on - strand, within CA264_17460at 4070.383 kb on - strand, within CA264_17460at 4070.383 kb on - strand, within CA264_17460at 4070.385 kb on + strand, within CA264_17460at 4070.385 kb on + strand, within CA264_17460at 4070.385 kb on + strand, within CA264_17460at 4070.529 kb on + strand, within CA264_17460at 4070.555 kb on + strand, within CA264_17460at 4070.560 kb on + strand, within CA264_17460at 4070.595 kb on + strand, within CA264_17460at 4070.660 kb on - strand, within CA264_17460at 4070.769 kb on + strand, within CA264_17460at 4070.774 kb on - strand, within CA264_17460at 4070.774 kb on - strand, within CA264_17460at 4070.846 kb on - strandat 4070.922 kb on + strandat 4070.957 kb on - strandat 4070.957 kb on - strandat 4070.961 kb on - strandat 4071.017 kb on + strandat 4071.018 kb on - strandat 4071.018 kb on - strandat 4071.027 kb on + strandat 4071.027 kb on + strandat 4071.142 kb on + strandat 4071.184 kb on - strandat 4071.184 kb on - strandat 4071.196 kb on + strandat 4071.197 kb on - strandat 4071.585 kb on - strandat 4071.585 kb on - strandat 4071.617 kb on + strandat 4071.619 kb on + strandat 4071.641 kb on - strandat 4071.645 kb on + strandat 4071.645 kb on + strandat 4071.645 kb on + strandat 4071.645 kb on + strandat 4071.646 kb on - strandat 4071.650 kb on + strandat 4071.650 kb on + strandat 4071.650 kb on + strandat 4071.650 kb on + strandat 4071.650 kb on + strandat 4071.651 kb on - strandat 4071.651 kb on - strandat 4071.651 kb on - strandat 4071.651 kb on - strandat 4071.714 kb on + strandat 4071.714 kb on + strandat 4071.715 kb on - strandat 4071.727 kb on + strandat 4071.727 kb on + strandat 4071.727 kb on + strandat 4071.735 kb on + strandat 4071.751 kb on + strand, within CA264_17470at 4071.751 kb on + strand, within CA264_17470at 4071.752 kb on - strand, within CA264_17470at 4071.818 kb on - strand, within CA264_17470at 4071.820 kb on - strand, within CA264_17470at 4071.820 kb on - strand, within CA264_17470at 4071.820 kb on - strand, within CA264_17470at 4071.862 kb on - strand, within CA264_17470at 4071.874 kb on + strand, within CA264_17470at 4071.874 kb on + strand, within CA264_17470at 4071.875 kb on - strand, within CA264_17470at 4071.875 kb on - strand, within CA264_17470at 4071.880 kb on + strand, within CA264_17470at 4071.902 kb on + strand, within CA264_17470at 4071.931 kb on - strand, within CA264_17470at 4071.944 kb on - strand, within CA264_17470at 4071.944 kb on - strand, within CA264_17470at 4071.954 kb on + strand, within CA264_17470at 4071.954 kb on + strand, within CA264_17470at 4071.954 kb on + strand, within CA264_17470at 4071.954 kb on + strand, within CA264_17470at 4071.954 kb on + strand, within CA264_17470at 4071.954 kb on + strand, within CA264_17470at 4071.954 kb on + strand, within CA264_17470at 4071.955 kb on - strand, within CA264_17470at 4071.955 kb on - strand, within CA264_17470at 4071.955 kb on - strand, within CA264_17470at 4071.955 kb on - strand, within CA264_17470at 4071.955 kb on - strand, within CA264_17470

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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4,068,485 + CA264_17455 0.32 +0.9
4,068,485 + CA264_17455 0.32 +1.0
4,068,485 + CA264_17455 0.32 +2.0
4,068,486 - CA264_17455 0.32 +1.6
4,068,570 + CA264_17455 0.38 +1.6
4,068,570 + CA264_17455 0.38 +0.3
4,068,571 - CA264_17455 0.38 +1.6
4,068,571 - CA264_17455 0.38 +1.1
4,068,651 - CA264_17455 0.44 +1.0
4,068,651 - CA264_17455 0.44 +2.1
4,068,651 - CA264_17455 0.44 +1.9
4,068,694 + CA264_17455 0.47 -1.3
4,068,729 + CA264_17455 0.50 +1.0
4,068,730 - CA264_17455 0.50 +2.1
4,068,828 + CA264_17455 0.57 -1.0
4,068,828 + CA264_17455 0.57 +0.6
4,068,900 + CA264_17455 0.62 +0.7
4,068,991 + CA264_17455 0.69 +0.2
4,068,992 - CA264_17455 0.69 +1.2
4,069,013 + CA264_17455 0.70 +1.0
4,069,163 - CA264_17455 0.81 +1.0
4,069,212 - CA264_17455 0.85 +1.2
4,069,336 + -0.0
4,069,337 - -1.4
4,069,338 + +0.8
4,069,339 - +1.5
4,069,339 - +1.3
4,069,339 - +1.5
4,069,339 - +3.7
4,069,339 - +0.7
4,069,339 - +1.0
4,069,358 + +2.1
4,069,358 + +0.6
4,069,358 + -0.3
4,069,358 + +0.8
4,069,382 - +1.0
4,069,386 - +1.4
4,069,396 - +1.3
4,069,404 + +0.5
4,069,405 - -1.6
4,069,442 + +0.5
4,069,482 - -0.0
4,069,519 - +0.9
4,069,574 - +1.4
4,069,810 + CA264_17460 0.23 -0.8
4,069,835 + CA264_17460 0.25 +1.8
4,069,869 + CA264_17460 0.27 -0.3
4,069,874 - CA264_17460 0.27 +2.1
4,069,934 + CA264_17460 0.31 +0.7
4,069,948 - CA264_17460 0.32 -0.4
4,069,968 + CA264_17460 0.34 -0.0
4,069,968 + CA264_17460 0.34 +0.7
4,069,969 - CA264_17460 0.34 +0.7
4,070,019 - CA264_17460 0.37 +0.9
4,070,019 - CA264_17460 0.37 +1.1
4,070,056 - CA264_17460 0.39 +1.3
4,070,069 + CA264_17460 0.40 +1.3
4,070,069 + CA264_17460 0.40 +0.7
4,070,078 + CA264_17460 0.41 -0.3
4,070,078 + CA264_17460 0.41 +1.3
4,070,079 - CA264_17460 0.41 +0.5
4,070,150 + CA264_17460 0.46 +0.6
4,070,258 + CA264_17460 0.53 +0.3
4,070,258 + CA264_17460 0.53 -0.1
4,070,258 + CA264_17460 0.53 +1.0
4,070,259 - CA264_17460 0.53 +1.3
4,070,265 + CA264_17460 0.53 -0.2
4,070,265 + CA264_17460 0.53 +0.3
4,070,265 + CA264_17460 0.53 -0.5
4,070,266 - CA264_17460 0.53 +0.3
4,070,266 - CA264_17460 0.53 +2.0
4,070,337 - CA264_17460 0.58 +1.8
4,070,379 + CA264_17460 0.61 +0.5
4,070,379 + CA264_17460 0.61 +1.6
4,070,380 - CA264_17460 0.61 -0.9
4,070,382 + CA264_17460 0.61 +0.2
4,070,382 + CA264_17460 0.61 +0.6
4,070,382 + CA264_17460 0.61 +0.0
4,070,382 + CA264_17460 0.61 +0.2
4,070,383 - CA264_17460 0.61 +0.5
4,070,383 - CA264_17460 0.61 +0.2
4,070,383 - CA264_17460 0.61 +1.0
4,070,383 - CA264_17460 0.61 +2.0
4,070,383 - CA264_17460 0.61 +0.8
4,070,385 + CA264_17460 0.61 +0.5
4,070,385 + CA264_17460 0.61 +0.3
4,070,385 + CA264_17460 0.61 -0.3
4,070,529 + CA264_17460 0.71 +1.6
4,070,555 + CA264_17460 0.72 +0.2
4,070,560 + CA264_17460 0.73 +1.2
4,070,595 + CA264_17460 0.75 +0.1
4,070,660 - CA264_17460 0.79 +0.2
4,070,769 + CA264_17460 0.86 +2.0
4,070,774 - CA264_17460 0.87 +0.4
4,070,774 - CA264_17460 0.87 +1.2
4,070,846 - -0.1
4,070,922 + -2.0
4,070,957 - +0.5
4,070,957 - +0.4
4,070,961 - -0.5
4,071,017 + +1.0
4,071,018 - +0.4
4,071,018 - -0.0
4,071,027 + -0.8
4,071,027 + -0.4
4,071,142 + +0.8
4,071,184 - +0.6
4,071,184 - -0.4
4,071,196 + +1.4
4,071,197 - +0.1
4,071,585 - -1.0
4,071,585 - -0.2
4,071,617 + +1.3
4,071,619 + +1.7
4,071,641 - +1.0
4,071,645 + -0.2
4,071,645 + +0.3
4,071,645 + -0.0
4,071,645 + -0.1
4,071,646 - -0.7
4,071,650 + +1.2
4,071,650 + +0.7
4,071,650 + -0.8
4,071,650 + +0.8
4,071,650 + +0.2
4,071,651 - -0.9
4,071,651 - +2.7
4,071,651 - -1.1
4,071,651 - -1.0
4,071,714 + -1.1
4,071,714 + +0.6
4,071,715 - -1.3
4,071,727 + +0.7
4,071,727 + +0.7
4,071,727 + +1.0
4,071,735 + +1.6
4,071,751 + CA264_17470 0.12 -1.3
4,071,751 + CA264_17470 0.12 -0.2
4,071,752 - CA264_17470 0.12 -0.2
4,071,818 - CA264_17470 0.22 -0.5
4,071,820 - CA264_17470 0.23 -0.4
4,071,820 - CA264_17470 0.23 +0.4
4,071,820 - CA264_17470 0.23 -0.0
4,071,862 - CA264_17470 0.29 +1.0
4,071,874 + CA264_17470 0.31 -0.2
4,071,874 + CA264_17470 0.31 +1.0
4,071,875 - CA264_17470 0.31 -0.0
4,071,875 - CA264_17470 0.31 +2.0
4,071,880 + CA264_17470 0.32 +0.7
4,071,902 + CA264_17470 0.36 -0.9
4,071,931 - CA264_17470 0.40 -0.8
4,071,944 - CA264_17470 0.42 +0.2
4,071,944 - CA264_17470 0.42 -2.3
4,071,954 + CA264_17470 0.44 -1.3
4,071,954 + CA264_17470 0.44 -0.3
4,071,954 + CA264_17470 0.44 -0.5
4,071,954 + CA264_17470 0.44 +0.2
4,071,954 + CA264_17470 0.44 -0.3
4,071,954 + CA264_17470 0.44 +0.3
4,071,954 + CA264_17470 0.44 +0.1
4,071,955 - CA264_17470 0.44 -0.2
4,071,955 - CA264_17470 0.44 +0.4
4,071,955 - CA264_17470 0.44 -0.6
4,071,955 - CA264_17470 0.44 -1.0
4,071,955 - CA264_17470 0.44 -0.0

Or see this region's nucleotide sequence