Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_17435 and CA264_17440 are separated by 55 nucleotides CA264_17440 and CA264_17445 are separated by 26 nucleotides CA264_17445 and CA264_17450 are separated by 992 nucleotides
CA264_17435: CA264_17435 - hypothetical protein, at 4,063,976 to 4,064,242
_17435
CA264_17440: CA264_17440 - subclass B1 metallo-beta-lactamase, at 4,064,298 to 4,065,026
_17440
CA264_17445: CA264_17445 - peptidase M28, at 4,065,053 to 4,066,435
_17445
CA264_17450: CA264_17450 - acyl-CoA thioesterase, at 4,067,428 to 4,067,985
_17450
Position (kb)
4065
4066
4067 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4
5
6
7
8 at 4064.264 kb on - strand at 4064.266 kb on - strand at 4064.291 kb on - strand at 4064.299 kb on + strand at 4064.300 kb on - strand at 4064.326 kb on - strand at 4064.379 kb on + strand, within CA264_17440 at 4064.524 kb on + strand, within CA264_17440 at 4064.563 kb on + strand, within CA264_17440 at 4064.563 kb on + strand, within CA264_17440 at 4064.564 kb on - strand, within CA264_17440 at 4064.564 kb on - strand, within CA264_17440 at 4064.566 kb on + strand, within CA264_17440 at 4064.567 kb on - strand, within CA264_17440 at 4064.567 kb on - strand, within CA264_17440 at 4064.652 kb on + strand, within CA264_17440 at 4064.653 kb on - strand, within CA264_17440 at 4064.655 kb on + strand, within CA264_17440 at 4064.656 kb on - strand, within CA264_17440 at 4064.656 kb on - strand, within CA264_17440 at 4064.723 kb on + strand, within CA264_17440 at 4064.724 kb on - strand, within CA264_17440 at 4064.758 kb on - strand, within CA264_17440 at 4064.836 kb on - strand, within CA264_17440 at 4064.883 kb on + strand, within CA264_17440 at 4064.902 kb on + strand, within CA264_17440 at 4064.902 kb on + strand, within CA264_17440 at 4064.909 kb on + strand, within CA264_17440 at 4064.918 kb on - strand, within CA264_17440 at 4064.918 kb on - strand, within CA264_17440 at 4064.918 kb on - strand, within CA264_17440 at 4065.001 kb on - strand at 4065.001 kb on - strand at 4065.027 kb on - strand at 4065.055 kb on - strand at 4065.151 kb on + strand at 4065.171 kb on + strand at 4065.171 kb on + strand at 4065.215 kb on + strand, within CA264_17445 at 4065.215 kb on + strand, within CA264_17445 at 4065.216 kb on - strand, within CA264_17445 at 4065.220 kb on - strand, within CA264_17445 at 4065.220 kb on - strand, within CA264_17445 at 4065.223 kb on - strand, within CA264_17445 at 4065.288 kb on + strand, within CA264_17445 at 4065.288 kb on + strand, within CA264_17445 at 4065.294 kb on - strand, within CA264_17445 at 4065.492 kb on + strand, within CA264_17445 at 4065.493 kb on - strand, within CA264_17445 at 4065.514 kb on + strand, within CA264_17445 at 4065.579 kb on + strand, within CA264_17445 at 4065.579 kb on + strand, within CA264_17445 at 4065.580 kb on - strand, within CA264_17445 at 4065.603 kb on + strand, within CA264_17445 at 4065.722 kb on - strand, within CA264_17445 at 4065.764 kb on - strand, within CA264_17445 at 4065.878 kb on - strand, within CA264_17445 at 4066.225 kb on + strand, within CA264_17445 at 4066.234 kb on + strand, within CA264_17445 at 4066.267 kb on + strand, within CA264_17445 at 4066.267 kb on + strand, within CA264_17445 at 4066.267 kb on + strand, within CA264_17445 at 4066.268 kb on - strand, within CA264_17445 at 4066.354 kb on + strand at 4066.354 kb on + strand at 4066.374 kb on - strand at 4066.414 kb on + strand at 4066.414 kb on + strand at 4066.435 kb on + strand at 4066.435 kb on + strand at 4066.435 kb on + strand at 4066.435 kb on + strand at 4066.435 kb on + strand at 4066.435 kb on + strand at 4066.435 kb on + strand at 4066.436 kb on - strand at 4066.436 kb on - strand at 4066.436 kb on - strand at 4066.436 kb on - strand at 4066.436 kb on - strand at 4066.436 kb on - strand at 4066.436 kb on - strand at 4066.436 kb on - strand at 4066.436 kb on - strand at 4066.436 kb on - strand at 4066.440 kb on - strand at 4066.440 kb on - strand at 4066.445 kb on + strand at 4066.446 kb on - strand at 4066.452 kb on + strand at 4066.472 kb on - strand at 4066.492 kb on - strand at 4066.500 kb on + strand at 4066.517 kb on - strand at 4066.621 kb on + strand at 4066.621 kb on + strand at 4066.622 kb on - strand at 4066.622 kb on - strand at 4066.712 kb on + strand at 4066.712 kb on + strand at 4066.712 kb on + strand at 4066.716 kb on + strand at 4066.716 kb on + strand at 4066.717 kb on - strand at 4066.766 kb on + strand at 4066.779 kb on + strand at 4066.781 kb on + strand at 4066.781 kb on + strand at 4066.787 kb on - strand at 4066.851 kb on - strand at 4066.851 kb on - strand at 4066.851 kb on - strand at 4066.852 kb on + strand at 4066.853 kb on - strand at 4066.853 kb on - strand at 4066.926 kb on - strand at 4066.926 kb on - strand at 4066.932 kb on + strand at 4066.950 kb on - strand at 4066.961 kb on - strand at 4066.993 kb on + strand at 4066.994 kb on - strand at 4066.994 kb on - strand at 4066.994 kb on - strand at 4066.994 kb on - strand at 4067.006 kb on + strand at 4067.007 kb on - strand at 4067.009 kb on - strand at 4067.009 kb on - strand at 4067.011 kb on + strand at 4067.011 kb on + strand at 4067.012 kb on - strand at 4067.012 kb on - strand at 4067.012 kb on - strand at 4067.089 kb on + strand at 4067.089 kb on + strand at 4067.089 kb on + strand at 4067.090 kb on - strand at 4067.274 kb on - strand at 4067.316 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 4,064,264 - +1.0 4,064,266 - -0.6 4,064,291 - +0.8 4,064,299 + -1.3 4,064,300 - -0.4 4,064,326 - -1.0 4,064,379 + CA264_17440 0.11 +1.0 4,064,524 + CA264_17440 0.31 -3.0 4,064,563 + CA264_17440 0.36 -0.9 4,064,563 + CA264_17440 0.36 +0.2 4,064,564 - CA264_17440 0.36 +0.4 4,064,564 - CA264_17440 0.36 +2.1 4,064,566 + CA264_17440 0.37 -0.4 4,064,567 - CA264_17440 0.37 -0.5 4,064,567 - CA264_17440 0.37 +1.0 4,064,652 + CA264_17440 0.49 -1.4 4,064,653 - CA264_17440 0.49 -0.3 4,064,655 + CA264_17440 0.49 -0.5 4,064,656 - CA264_17440 0.49 -0.6 4,064,656 - CA264_17440 0.49 -0.9 4,064,723 + CA264_17440 0.58 -1.0 4,064,724 - CA264_17440 0.58 +0.2 4,064,758 - CA264_17440 0.63 -1.2 4,064,836 - CA264_17440 0.74 +0.1 4,064,883 + CA264_17440 0.80 -0.3 4,064,902 + CA264_17440 0.83 -2.4 4,064,902 + CA264_17440 0.83 -0.8 4,064,909 + CA264_17440 0.84 -0.9 4,064,918 - CA264_17440 0.85 +0.1 4,064,918 - CA264_17440 0.85 -2.9 4,064,918 - CA264_17440 0.85 -0.3 4,065,001 - -0.0 4,065,001 - -1.0 4,065,027 - +0.3 4,065,055 - +4.0 4,065,151 + +1.0 4,065,171 + +1.5 4,065,171 + +1.0 4,065,215 + CA264_17445 0.12 +3.9 4,065,215 + CA264_17445 0.12 +3.5 4,065,216 - CA264_17445 0.12 +5.9 4,065,220 - CA264_17445 0.12 +5.3 4,065,220 - CA264_17445 0.12 +5.7 4,065,223 - CA264_17445 0.12 +5.4 4,065,288 + CA264_17445 0.17 +0.3 4,065,288 + CA264_17445 0.17 +1.0 4,065,294 - CA264_17445 0.17 +5.3 4,065,492 + CA264_17445 0.32 +1.4 4,065,493 - CA264_17445 0.32 +5.1 4,065,514 + CA264_17445 0.33 +1.0 4,065,579 + CA264_17445 0.38 +0.9 4,065,579 + CA264_17445 0.38 +2.0 4,065,580 - CA264_17445 0.38 +4.4 4,065,603 + CA264_17445 0.40 +1.2 4,065,722 - CA264_17445 0.48 +4.3 4,065,764 - CA264_17445 0.51 +4.4 4,065,878 - CA264_17445 0.60 +3.8 4,066,225 + CA264_17445 0.85 +0.5 4,066,234 + CA264_17445 0.85 -0.3 4,066,267 + CA264_17445 0.88 +0.9 4,066,267 + CA264_17445 0.88 +1.2 4,066,267 + CA264_17445 0.88 +1.4 4,066,268 - CA264_17445 0.88 +0.8 4,066,354 + -0.2 4,066,354 + +0.7 4,066,374 - +3.8 4,066,414 + +1.4 4,066,414 + +0.6 4,066,435 + +2.4 4,066,435 + +1.6 4,066,435 + +0.2 4,066,435 + +1.0 4,066,435 + +1.6 4,066,435 + +1.1 4,066,435 + +0.9 4,066,436 - +2.1 4,066,436 - +2.3 4,066,436 - +2.4 4,066,436 - +2.6 4,066,436 - +3.6 4,066,436 - +2.5 4,066,436 - +2.5 4,066,436 - +1.9 4,066,436 - +1.7 4,066,436 - +2.7 4,066,440 - +4.7 4,066,440 - +3.8 4,066,445 + +5.4 4,066,446 - +3.3 4,066,452 + +4.4 4,066,472 - +6.5 4,066,492 - +6.0 4,066,500 + +5.0 4,066,517 - +5.9 4,066,621 + +4.5 4,066,621 + +5.1 4,066,622 - +6.1 4,066,622 - +7.0 4,066,712 + +4.4 4,066,712 + +4.8 4,066,712 + +4.3 4,066,716 + +4.6 4,066,716 + +4.1 4,066,717 - +5.7 4,066,766 + +4.6 4,066,779 + +7.3 4,066,781 + +2.7 4,066,781 + +3.8 4,066,787 - +7.8 4,066,851 - +5.7 4,066,851 - +6.0 4,066,851 - +5.6 4,066,852 + +2.9 4,066,853 - +6.4 4,066,853 - +4.4 4,066,926 - +6.4 4,066,926 - +6.2 4,066,932 + +4.2 4,066,950 - +5.7 4,066,961 - +6.0 4,066,993 + +2.9 4,066,994 - +6.8 4,066,994 - +5.8 4,066,994 - +5.0 4,066,994 - +5.5 4,067,006 + +2.3 4,067,007 - +5.7 4,067,009 - +5.3 4,067,009 - +6.0 4,067,011 + +2.7 4,067,011 + +2.8 4,067,012 - +5.6 4,067,012 - +6.0 4,067,012 - +6.0 4,067,089 + +2.5 4,067,089 + -0.0 4,067,089 + +2.9 4,067,090 - +6.3 4,067,274 - +5.1 4,067,316 - +5.5
Or see this region's nucleotide sequence