Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_17445

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_17435 and CA264_17440 are separated by 55 nucleotidesCA264_17440 and CA264_17445 are separated by 26 nucleotidesCA264_17445 and CA264_17450 are separated by 992 nucleotides CA264_17435: CA264_17435 - hypothetical protein, at 4,063,976 to 4,064,242 _17435 CA264_17440: CA264_17440 - subclass B1 metallo-beta-lactamase, at 4,064,298 to 4,065,026 _17440 CA264_17445: CA264_17445 - peptidase M28, at 4,065,053 to 4,066,435 _17445 CA264_17450: CA264_17450 - acyl-CoA thioesterase, at 4,067,428 to 4,067,985 _17450 Position (kb) 4065 4066 4067Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7 8at 4064.264 kb on - strandat 4064.266 kb on - strandat 4064.291 kb on - strandat 4064.299 kb on + strandat 4064.300 kb on - strandat 4064.326 kb on - strandat 4064.379 kb on + strand, within CA264_17440at 4064.524 kb on + strand, within CA264_17440at 4064.563 kb on + strand, within CA264_17440at 4064.563 kb on + strand, within CA264_17440at 4064.564 kb on - strand, within CA264_17440at 4064.564 kb on - strand, within CA264_17440at 4064.566 kb on + strand, within CA264_17440at 4064.567 kb on - strand, within CA264_17440at 4064.567 kb on - strand, within CA264_17440at 4064.652 kb on + strand, within CA264_17440at 4064.653 kb on - strand, within CA264_17440at 4064.655 kb on + strand, within CA264_17440at 4064.656 kb on - strand, within CA264_17440at 4064.656 kb on - strand, within CA264_17440at 4064.723 kb on + strand, within CA264_17440at 4064.724 kb on - strand, within CA264_17440at 4064.758 kb on - strand, within CA264_17440at 4064.836 kb on - strand, within CA264_17440at 4064.883 kb on + strand, within CA264_17440at 4064.902 kb on + strand, within CA264_17440at 4064.902 kb on + strand, within CA264_17440at 4064.909 kb on + strand, within CA264_17440at 4064.918 kb on - strand, within CA264_17440at 4064.918 kb on - strand, within CA264_17440at 4064.918 kb on - strand, within CA264_17440at 4065.001 kb on - strandat 4065.001 kb on - strandat 4065.027 kb on - strandat 4065.055 kb on - strandat 4065.151 kb on + strandat 4065.171 kb on + strandat 4065.171 kb on + strandat 4065.215 kb on + strand, within CA264_17445at 4065.215 kb on + strand, within CA264_17445at 4065.216 kb on - strand, within CA264_17445at 4065.220 kb on - strand, within CA264_17445at 4065.220 kb on - strand, within CA264_17445at 4065.223 kb on - strand, within CA264_17445at 4065.288 kb on + strand, within CA264_17445at 4065.288 kb on + strand, within CA264_17445at 4065.294 kb on - strand, within CA264_17445at 4065.492 kb on + strand, within CA264_17445at 4065.493 kb on - strand, within CA264_17445at 4065.514 kb on + strand, within CA264_17445at 4065.579 kb on + strand, within CA264_17445at 4065.579 kb on + strand, within CA264_17445at 4065.580 kb on - strand, within CA264_17445at 4065.603 kb on + strand, within CA264_17445at 4065.722 kb on - strand, within CA264_17445at 4065.764 kb on - strand, within CA264_17445at 4065.878 kb on - strand, within CA264_17445at 4066.225 kb on + strand, within CA264_17445at 4066.234 kb on + strand, within CA264_17445at 4066.267 kb on + strand, within CA264_17445at 4066.267 kb on + strand, within CA264_17445at 4066.267 kb on + strand, within CA264_17445at 4066.268 kb on - strand, within CA264_17445at 4066.354 kb on + strandat 4066.354 kb on + strandat 4066.374 kb on - strandat 4066.414 kb on + strandat 4066.414 kb on + strandat 4066.435 kb on + strandat 4066.435 kb on + strandat 4066.435 kb on + strandat 4066.435 kb on + strandat 4066.435 kb on + strandat 4066.435 kb on + strandat 4066.435 kb on + strandat 4066.436 kb on - strandat 4066.436 kb on - strandat 4066.436 kb on - strandat 4066.436 kb on - strandat 4066.436 kb on - strandat 4066.436 kb on - strandat 4066.436 kb on - strandat 4066.436 kb on - strandat 4066.436 kb on - strandat 4066.436 kb on - strandat 4066.440 kb on - strandat 4066.440 kb on - strandat 4066.445 kb on + strandat 4066.446 kb on - strandat 4066.452 kb on + strandat 4066.472 kb on - strandat 4066.492 kb on - strandat 4066.500 kb on + strandat 4066.517 kb on - strandat 4066.621 kb on + strandat 4066.621 kb on + strandat 4066.622 kb on - strandat 4066.622 kb on - strandat 4066.712 kb on + strandat 4066.712 kb on + strandat 4066.712 kb on + strandat 4066.716 kb on + strandat 4066.716 kb on + strandat 4066.717 kb on - strandat 4066.766 kb on + strandat 4066.779 kb on + strandat 4066.781 kb on + strandat 4066.781 kb on + strandat 4066.787 kb on - strandat 4066.851 kb on - strandat 4066.851 kb on - strandat 4066.851 kb on - strandat 4066.852 kb on + strandat 4066.853 kb on - strandat 4066.853 kb on - strandat 4066.926 kb on - strandat 4066.926 kb on - strandat 4066.932 kb on + strandat 4066.950 kb on - strandat 4066.961 kb on - strandat 4066.993 kb on + strandat 4066.994 kb on - strandat 4066.994 kb on - strandat 4066.994 kb on - strandat 4066.994 kb on - strandat 4067.006 kb on + strandat 4067.007 kb on - strandat 4067.009 kb on - strandat 4067.009 kb on - strandat 4067.011 kb on + strandat 4067.011 kb on + strandat 4067.012 kb on - strandat 4067.012 kb on - strandat 4067.012 kb on - strandat 4067.089 kb on + strandat 4067.089 kb on + strandat 4067.089 kb on + strandat 4067.090 kb on - strandat 4067.274 kb on - strandat 4067.316 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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4,064,264 - +1.0
4,064,266 - -0.6
4,064,291 - +0.8
4,064,299 + -1.3
4,064,300 - -0.4
4,064,326 - -1.0
4,064,379 + CA264_17440 0.11 +1.0
4,064,524 + CA264_17440 0.31 -3.0
4,064,563 + CA264_17440 0.36 -0.9
4,064,563 + CA264_17440 0.36 +0.2
4,064,564 - CA264_17440 0.36 +0.4
4,064,564 - CA264_17440 0.36 +2.1
4,064,566 + CA264_17440 0.37 -0.4
4,064,567 - CA264_17440 0.37 -0.5
4,064,567 - CA264_17440 0.37 +1.0
4,064,652 + CA264_17440 0.49 -1.4
4,064,653 - CA264_17440 0.49 -0.3
4,064,655 + CA264_17440 0.49 -0.5
4,064,656 - CA264_17440 0.49 -0.6
4,064,656 - CA264_17440 0.49 -0.9
4,064,723 + CA264_17440 0.58 -1.0
4,064,724 - CA264_17440 0.58 +0.2
4,064,758 - CA264_17440 0.63 -1.2
4,064,836 - CA264_17440 0.74 +0.1
4,064,883 + CA264_17440 0.80 -0.3
4,064,902 + CA264_17440 0.83 -2.4
4,064,902 + CA264_17440 0.83 -0.8
4,064,909 + CA264_17440 0.84 -0.9
4,064,918 - CA264_17440 0.85 +0.1
4,064,918 - CA264_17440 0.85 -2.9
4,064,918 - CA264_17440 0.85 -0.3
4,065,001 - -0.0
4,065,001 - -1.0
4,065,027 - +0.3
4,065,055 - +4.0
4,065,151 + +1.0
4,065,171 + +1.5
4,065,171 + +1.0
4,065,215 + CA264_17445 0.12 +3.9
4,065,215 + CA264_17445 0.12 +3.5
4,065,216 - CA264_17445 0.12 +5.9
4,065,220 - CA264_17445 0.12 +5.3
4,065,220 - CA264_17445 0.12 +5.7
4,065,223 - CA264_17445 0.12 +5.4
4,065,288 + CA264_17445 0.17 +0.3
4,065,288 + CA264_17445 0.17 +1.0
4,065,294 - CA264_17445 0.17 +5.3
4,065,492 + CA264_17445 0.32 +1.4
4,065,493 - CA264_17445 0.32 +5.1
4,065,514 + CA264_17445 0.33 +1.0
4,065,579 + CA264_17445 0.38 +0.9
4,065,579 + CA264_17445 0.38 +2.0
4,065,580 - CA264_17445 0.38 +4.4
4,065,603 + CA264_17445 0.40 +1.2
4,065,722 - CA264_17445 0.48 +4.3
4,065,764 - CA264_17445 0.51 +4.4
4,065,878 - CA264_17445 0.60 +3.8
4,066,225 + CA264_17445 0.85 +0.5
4,066,234 + CA264_17445 0.85 -0.3
4,066,267 + CA264_17445 0.88 +0.9
4,066,267 + CA264_17445 0.88 +1.2
4,066,267 + CA264_17445 0.88 +1.4
4,066,268 - CA264_17445 0.88 +0.8
4,066,354 + -0.2
4,066,354 + +0.7
4,066,374 - +3.8
4,066,414 + +1.4
4,066,414 + +0.6
4,066,435 + +2.4
4,066,435 + +1.6
4,066,435 + +0.2
4,066,435 + +1.0
4,066,435 + +1.6
4,066,435 + +1.1
4,066,435 + +0.9
4,066,436 - +2.1
4,066,436 - +2.3
4,066,436 - +2.4
4,066,436 - +2.6
4,066,436 - +3.6
4,066,436 - +2.5
4,066,436 - +2.5
4,066,436 - +1.9
4,066,436 - +1.7
4,066,436 - +2.7
4,066,440 - +4.7
4,066,440 - +3.8
4,066,445 + +5.4
4,066,446 - +3.3
4,066,452 + +4.4
4,066,472 - +6.5
4,066,492 - +6.0
4,066,500 + +5.0
4,066,517 - +5.9
4,066,621 + +4.5
4,066,621 + +5.1
4,066,622 - +6.1
4,066,622 - +7.0
4,066,712 + +4.4
4,066,712 + +4.8
4,066,712 + +4.3
4,066,716 + +4.6
4,066,716 + +4.1
4,066,717 - +5.7
4,066,766 + +4.6
4,066,779 + +7.3
4,066,781 + +2.7
4,066,781 + +3.8
4,066,787 - +7.8
4,066,851 - +5.7
4,066,851 - +6.0
4,066,851 - +5.6
4,066,852 + +2.9
4,066,853 - +6.4
4,066,853 - +4.4
4,066,926 - +6.4
4,066,926 - +6.2
4,066,932 + +4.2
4,066,950 - +5.7
4,066,961 - +6.0
4,066,993 + +2.9
4,066,994 - +6.8
4,066,994 - +5.8
4,066,994 - +5.0
4,066,994 - +5.5
4,067,006 + +2.3
4,067,007 - +5.7
4,067,009 - +5.3
4,067,009 - +6.0
4,067,011 + +2.7
4,067,011 + +2.8
4,067,012 - +5.6
4,067,012 - +6.0
4,067,012 - +6.0
4,067,089 + +2.5
4,067,089 + -0.0
4,067,089 + +2.9
4,067,090 - +6.3
4,067,274 - +5.1
4,067,316 - +5.5

Or see this region's nucleotide sequence