Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_16295

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_16285 and CA264_16290 are separated by 121 nucleotidesCA264_16290 and CA264_16295 are separated by 71 nucleotidesCA264_16295 and CA264_16300 are separated by 182 nucleotides CA264_16285: CA264_16285 - hypothetical protein, at 3,789,806 to 3,790,705 _16285 CA264_16290: CA264_16290 - inorganic pyrophosphatase, at 3,790,827 to 3,791,390 _16290 CA264_16295: CA264_16295 - alkaline phosphatase family protein, at 3,791,462 to 3,793,159 _16295 CA264_16300: CA264_16300 - ATP synthase F1 subunit gamma, at 3,793,342 to 3,794,232 _16300 Position (kb) 3791 3792 3793 3794Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3790.463 kb on + strand, within CA264_16285at 3790.513 kb on - strand, within CA264_16285at 3790.581 kb on + strand, within CA264_16285at 3790.709 kb on - strandat 3790.808 kb on - strandat 3790.829 kb on - strandat 3790.866 kb on - strandat 3791.409 kb on + strandat 3791.416 kb on + strandat 3791.433 kb on - strandat 3791.453 kb on - strandat 3791.472 kb on + strandat 3791.472 kb on + strandat 3791.473 kb on - strandat 3791.474 kb on + strandat 3791.534 kb on - strandat 3791.634 kb on + strand, within CA264_16295at 3791.635 kb on - strand, within CA264_16295at 3791.696 kb on + strand, within CA264_16295at 3791.696 kb on + strand, within CA264_16295at 3791.951 kb on - strand, within CA264_16295at 3791.951 kb on - strand, within CA264_16295at 3792.318 kb on + strand, within CA264_16295at 3792.600 kb on - strand, within CA264_16295at 3792.763 kb on - strand, within CA264_16295at 3792.763 kb on - strand, within CA264_16295at 3792.763 kb on - strand, within CA264_16295at 3792.763 kb on - strand, within CA264_16295at 3792.764 kb on + strand, within CA264_16295at 3792.773 kb on - strand, within CA264_16295at 3792.841 kb on + strand, within CA264_16295at 3792.841 kb on + strand, within CA264_16295at 3792.876 kb on + strand, within CA264_16295at 3792.877 kb on - strand, within CA264_16295at 3792.877 kb on - strand, within CA264_16295at 3792.882 kb on + strand, within CA264_16295at 3792.902 kb on - strand, within CA264_16295at 3792.973 kb on - strand, within CA264_16295at 3793.034 kb on - strandat 3793.139 kb on + strandat 3793.139 kb on + strandat 3793.139 kb on + strandat 3793.140 kb on - strandat 3793.140 kb on - strandat 3793.140 kb on - strandat 3793.159 kb on + strandat 3793.172 kb on - strandat 3793.188 kb on + strandat 3793.195 kb on - strandat 3793.203 kb on + strandat 3793.203 kb on + strandat 3793.204 kb on - strandat 3793.211 kb on - strandat 3793.236 kb on - strandat 3793.248 kb on - strandat 3793.255 kb on - strandat 3793.262 kb on + strandat 3793.343 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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3,790,463 + CA264_16285 0.73 -0.2
3,790,513 - CA264_16285 0.79 +0.4
3,790,581 + CA264_16285 0.86 -0.2
3,790,709 - -0.4
3,790,808 - -1.2
3,790,829 - +1.0
3,790,866 - -1.3
3,791,409 + -0.3
3,791,416 + -0.7
3,791,433 - +1.0
3,791,453 - -1.0
3,791,472 + -0.6
3,791,472 + +3.0
3,791,473 - -1.2
3,791,474 + +1.0
3,791,534 - -2.4
3,791,634 + CA264_16295 0.10 -0.4
3,791,635 - CA264_16295 0.10 +1.4
3,791,696 + CA264_16295 0.14 -0.1
3,791,696 + CA264_16295 0.14 +0.1
3,791,951 - CA264_16295 0.29 -1.0
3,791,951 - CA264_16295 0.29 -0.6
3,792,318 + CA264_16295 0.50 -0.6
3,792,600 - CA264_16295 0.67 -0.8
3,792,763 - CA264_16295 0.77 -1.4
3,792,763 - CA264_16295 0.77 -1.8
3,792,763 - CA264_16295 0.77 -1.6
3,792,763 - CA264_16295 0.77 -1.8
3,792,764 + CA264_16295 0.77 -1.3
3,792,773 - CA264_16295 0.77 -0.9
3,792,841 + CA264_16295 0.81 -0.2
3,792,841 + CA264_16295 0.81 -0.6
3,792,876 + CA264_16295 0.83 +0.5
3,792,877 - CA264_16295 0.83 -1.7
3,792,877 - CA264_16295 0.83 -1.1
3,792,882 + CA264_16295 0.84 -0.9
3,792,902 - CA264_16295 0.85 +0.1
3,792,973 - CA264_16295 0.89 -2.8
3,793,034 - -1.0
3,793,139 + -0.6
3,793,139 + -0.7
3,793,139 + +0.4
3,793,140 - -0.5
3,793,140 - -1.0
3,793,140 - +3.1
3,793,159 + -0.9
3,793,172 - -1.8
3,793,188 + -0.3
3,793,195 - -1.0
3,793,203 + +1.6
3,793,203 + -1.7
3,793,204 - -1.0
3,793,211 - -0.8
3,793,236 - +0.7
3,793,248 - -1.6
3,793,255 - -0.4
3,793,262 + -0.0
3,793,343 + +0.4

Or see this region's nucleotide sequence