Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_15685 and CA264_15690 are separated by 100 nucleotides CA264_15690 and CA264_15695 overlap by 1 nucleotides
CA264_15685: CA264_15685 - 30S ribosomal protein S12 methylthiotransferase RimO, at 3,661,171 to 3,662,484
_15685
CA264_15690: CA264_15690 - hypothetical protein, at 3,662,585 to 3,662,968
_15690
CA264_15695: CA264_15695 - T9SS C-terminal target domain-containing protein, at 3,662,968 to 3,665,214
_15695
Position (kb)
3662
3663 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3661.600 kb on + strand, within CA264_15685 at 3661.600 kb on + strand, within CA264_15685 at 3661.601 kb on - strand, within CA264_15685 at 3661.605 kb on + strand, within CA264_15685 at 3661.606 kb on - strand, within CA264_15685 at 3661.673 kb on + strand, within CA264_15685 at 3661.673 kb on + strand, within CA264_15685 at 3661.674 kb on - strand, within CA264_15685 at 3661.760 kb on + strand, within CA264_15685 at 3661.760 kb on + strand, within CA264_15685 at 3661.761 kb on - strand, within CA264_15685 at 3661.765 kb on + strand, within CA264_15685 at 3661.765 kb on + strand, within CA264_15685 at 3661.765 kb on + strand, within CA264_15685 at 3661.765 kb on + strand, within CA264_15685 at 3661.766 kb on - strand, within CA264_15685 at 3661.766 kb on - strand, within CA264_15685 at 3661.768 kb on + strand, within CA264_15685 at 3661.768 kb on + strand, within CA264_15685 at 3661.769 kb on - strand, within CA264_15685 at 3661.795 kb on - strand, within CA264_15685 at 3661.858 kb on + strand, within CA264_15685 at 3661.858 kb on + strand, within CA264_15685 at 3661.858 kb on + strand, within CA264_15685 at 3661.858 kb on + strand, within CA264_15685 at 3661.859 kb on - strand, within CA264_15685 at 3661.864 kb on + strand, within CA264_15685 at 3662.052 kb on - strand, within CA264_15685 at 3662.063 kb on + strand, within CA264_15685 at 3662.063 kb on + strand, within CA264_15685 at 3662.064 kb on - strand, within CA264_15685 at 3662.111 kb on - strand, within CA264_15685 at 3662.111 kb on - strand, within CA264_15685 at 3662.154 kb on + strand, within CA264_15685 at 3662.154 kb on + strand, within CA264_15685 at 3662.155 kb on - strand, within CA264_15685 at 3662.155 kb on - strand, within CA264_15685 at 3662.185 kb on + strand, within CA264_15685 at 3662.186 kb on - strand, within CA264_15685 at 3662.193 kb on - strand, within CA264_15685 at 3662.307 kb on - strand, within CA264_15685 at 3662.307 kb on - strand, within CA264_15685 at 3662.346 kb on + strand, within CA264_15685 at 3662.353 kb on + strand at 3662.353 kb on + strand at 3662.382 kb on - strand at 3662.382 kb on - strand at 3662.405 kb on - strand at 3662.440 kb on - strand at 3662.475 kb on - strand at 3662.477 kb on + strand at 3662.477 kb on + strand at 3662.478 kb on - strand at 3662.483 kb on - strand at 3662.495 kb on + strand at 3662.502 kb on - strand at 3662.506 kb on + strand at 3662.507 kb on - strand at 3662.511 kb on - strand at 3662.534 kb on + strand at 3662.534 kb on + strand at 3662.536 kb on + strand at 3662.536 kb on + strand at 3662.536 kb on + strand at 3662.536 kb on + strand at 3662.536 kb on + strand at 3662.536 kb on + strand at 3662.536 kb on + strand at 3662.537 kb on - strand at 3662.537 kb on - strand at 3662.537 kb on - strand at 3662.657 kb on + strand, within CA264_15690 at 3662.702 kb on + strand, within CA264_15690 at 3662.786 kb on - strand, within CA264_15690 at 3662.841 kb on - strand, within CA264_15690 at 3662.873 kb on + strand, within CA264_15690 at 3662.874 kb on - strand, within CA264_15690 at 3662.874 kb on - strand, within CA264_15690 at 3662.874 kb on - strand, within CA264_15690 at 3663.029 kb on + strand at 3663.029 kb on + strand at 3663.029 kb on + strand at 3663.029 kb on + strand at 3663.030 kb on - strand at 3663.030 kb on - strand at 3663.030 kb on - strand at 3663.030 kb on - strand at 3663.058 kb on + strand at 3663.059 kb on - strand at 3663.059 kb on - strand at 3663.059 kb on - strand at 3663.064 kb on - strand at 3663.077 kb on + strand at 3663.095 kb on + strand at 3663.119 kb on + strand at 3663.120 kb on - strand at 3663.151 kb on + strand at 3663.151 kb on + strand at 3663.151 kb on + strand at 3663.183 kb on - strand at 3663.194 kb on + strand, within CA264_15695 at 3663.195 kb on - strand, within CA264_15695 at 3663.196 kb on + strand, within CA264_15695 at 3663.196 kb on + strand, within CA264_15695 at 3663.264 kb on - strand, within CA264_15695 at 3663.410 kb on + strand, within CA264_15695 at 3663.411 kb on - strand, within CA264_15695 at 3663.451 kb on + strand, within CA264_15695 at 3663.509 kb on + strand, within CA264_15695 at 3663.528 kb on - strand, within CA264_15695 at 3663.580 kb on - strand, within CA264_15695 at 3663.580 kb on - strand, within CA264_15695 at 3663.719 kb on - strand, within CA264_15695 at 3663.719 kb on - strand, within CA264_15695 at 3663.722 kb on - strand, within CA264_15695 at 3663.722 kb on - strand, within CA264_15695 at 3663.735 kb on - strand, within CA264_15695 at 3663.746 kb on + strand, within CA264_15695 at 3663.802 kb on - strand, within CA264_15695 at 3663.822 kb on + strand, within CA264_15695 at 3663.880 kb on + strand, within CA264_15695 at 3663.887 kb on + strand, within CA264_15695 at 3663.935 kb on + strand, within CA264_15695 at 3663.935 kb on + strand, within CA264_15695 at 3663.936 kb on - strand, within CA264_15695 at 3663.936 kb on - strand, within CA264_15695 at 3663.936 kb on - strand, within CA264_15695
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 3,661,600 + CA264_15685 0.33 -0.6 3,661,600 + CA264_15685 0.33 +1.6 3,661,601 - CA264_15685 0.33 -0.1 3,661,605 + CA264_15685 0.33 +0.4 3,661,606 - CA264_15685 0.33 -0.8 3,661,673 + CA264_15685 0.38 -0.2 3,661,673 + CA264_15685 0.38 -1.3 3,661,674 - CA264_15685 0.38 +0.0 3,661,760 + CA264_15685 0.45 -1.4 3,661,760 + CA264_15685 0.45 -0.8 3,661,761 - CA264_15685 0.45 +0.2 3,661,765 + CA264_15685 0.45 -0.2 3,661,765 + CA264_15685 0.45 -0.6 3,661,765 + CA264_15685 0.45 -2.1 3,661,765 + CA264_15685 0.45 +0.6 3,661,766 - CA264_15685 0.45 +0.4 3,661,766 - CA264_15685 0.45 -0.8 3,661,768 + CA264_15685 0.45 +0.4 3,661,768 + CA264_15685 0.45 -0.1 3,661,769 - CA264_15685 0.46 +0.9 3,661,795 - CA264_15685 0.47 -0.6 3,661,858 + CA264_15685 0.52 +0.9 3,661,858 + CA264_15685 0.52 +0.6 3,661,858 + CA264_15685 0.52 -0.4 3,661,858 + CA264_15685 0.52 -0.6 3,661,859 - CA264_15685 0.52 +0.7 3,661,864 + CA264_15685 0.53 +0.3 3,662,052 - CA264_15685 0.67 +0.0 3,662,063 + CA264_15685 0.68 -0.2 3,662,063 + CA264_15685 0.68 -2.6 3,662,064 - CA264_15685 0.68 -1.5 3,662,111 - CA264_15685 0.72 -0.7 3,662,111 - CA264_15685 0.72 -0.4 3,662,154 + CA264_15685 0.75 +0.3 3,662,154 + CA264_15685 0.75 +0.3 3,662,155 - CA264_15685 0.75 -0.6 3,662,155 - CA264_15685 0.75 +1.0 3,662,185 + CA264_15685 0.77 -1.6 3,662,186 - CA264_15685 0.77 -0.1 3,662,193 - CA264_15685 0.78 -0.6 3,662,307 - CA264_15685 0.86 +0.0 3,662,307 - CA264_15685 0.86 -0.2 3,662,346 + CA264_15685 0.89 -1.0 3,662,353 + +0.0 3,662,353 + -1.2 3,662,382 - -0.0 3,662,382 - -0.2 3,662,405 - -0.8 3,662,440 - +0.3 3,662,475 - +1.0 3,662,477 + +0.3 3,662,477 + +0.1 3,662,478 - +0.4 3,662,483 - +0.8 3,662,495 + +1.2 3,662,502 - +1.0 3,662,506 + +0.3 3,662,507 - -0.0 3,662,511 - -0.9 3,662,534 + -2.8 3,662,534 + +0.7 3,662,536 + -0.2 3,662,536 + -1.0 3,662,536 + +0.3 3,662,536 + +0.0 3,662,536 + -0.8 3,662,536 + -0.1 3,662,536 + +0.4 3,662,537 - -0.4 3,662,537 - +0.3 3,662,537 - -1.8 3,662,657 + CA264_15690 0.19 +1.0 3,662,702 + CA264_15690 0.30 -1.4 3,662,786 - CA264_15690 0.52 -0.6 3,662,841 - CA264_15690 0.67 +1.2 3,662,873 + CA264_15690 0.75 +1.0 3,662,874 - CA264_15690 0.75 +0.7 3,662,874 - CA264_15690 0.75 +1.5 3,662,874 - CA264_15690 0.75 +0.4 3,663,029 + -0.6 3,663,029 + -0.7 3,663,029 + -0.2 3,663,029 + -1.1 3,663,030 - -1.1 3,663,030 - -0.7 3,663,030 - +0.1 3,663,030 - -0.2 3,663,058 + +0.0 3,663,059 - -0.1 3,663,059 - -0.1 3,663,059 - -0.6 3,663,064 - -0.0 3,663,077 + -0.6 3,663,095 + +0.2 3,663,119 + +0.0 3,663,120 - +0.2 3,663,151 + -2.1 3,663,151 + -0.4 3,663,151 + +0.5 3,663,183 - -0.8 3,663,194 + CA264_15695 0.10 -1.7 3,663,195 - CA264_15695 0.10 -2.3 3,663,196 + CA264_15695 0.10 -1.0 3,663,196 + CA264_15695 0.10 -0.6 3,663,264 - CA264_15695 0.13 +0.4 3,663,410 + CA264_15695 0.20 -1.1 3,663,411 - CA264_15695 0.20 +0.6 3,663,451 + CA264_15695 0.21 -0.6 3,663,509 + CA264_15695 0.24 -1.0 3,663,528 - CA264_15695 0.25 -0.4 3,663,580 - CA264_15695 0.27 -0.6 3,663,580 - CA264_15695 0.27 +1.8 3,663,719 - CA264_15695 0.33 -0.0 3,663,719 - CA264_15695 0.33 +0.7 3,663,722 - CA264_15695 0.34 +1.0 3,663,722 - CA264_15695 0.34 -1.0 3,663,735 - CA264_15695 0.34 +2.0 3,663,746 + CA264_15695 0.35 -0.8 3,663,802 - CA264_15695 0.37 +0.0 3,663,822 + CA264_15695 0.38 -1.6 3,663,880 + CA264_15695 0.41 -0.4 3,663,887 + CA264_15695 0.41 -0.7 3,663,935 + CA264_15695 0.43 +1.0 3,663,935 + CA264_15695 0.43 -1.3 3,663,936 - CA264_15695 0.43 +0.6 3,663,936 - CA264_15695 0.43 -0.9 3,663,936 - CA264_15695 0.43 -0.1
Or see this region's nucleotide sequence