Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15670

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15655 and CA264_15660 are separated by 134 nucleotidesCA264_15660 and CA264_15665 are separated by 320 nucleotidesCA264_15665 and CA264_15670 are separated by 2 nucleotidesCA264_15670 and CA264_15675 are separated by 114 nucleotides CA264_15655: CA264_15655 - hypothetical protein, at 3,658,301 to 3,658,504 _15655 CA264_15660: CA264_15660 - 50S ribosomal protein L28, at 3,658,639 to 3,658,878 _15660 CA264_15665: CA264_15665 - 50S ribosomal protein L33, at 3,659,199 to 3,659,387 _15665 CA264_15670: CA264_15670 - DUF4295 domain-containing protein, at 3,659,390 to 3,659,542 _15670 CA264_15675: CA264_15675 - signal recognition particle-docking protein FtsY, at 3,659,657 to 3,660,616 _15675 Position (kb) 3659 3660Strain fitness (log2 ratio) -2 -1 0 1 2at 3658.853 kb on + strand, within CA264_15660at 3658.864 kb on + strandat 3658.864 kb on + strandat 3658.864 kb on + strandat 3658.876 kb on + strandat 3658.877 kb on - strandat 3658.966 kb on + strandat 3658.998 kb on + strandat 3659.088 kb on + strandat 3659.092 kb on + strandat 3659.119 kb on - strandat 3659.119 kb on - strandat 3659.520 kb on + strand, within CA264_15670at 3659.520 kb on + strand, within CA264_15670at 3659.533 kb on + strandat 3659.533 kb on + strandat 3659.543 kb on + strandat 3659.573 kb on + strandat 3659.573 kb on + strandat 3659.641 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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3,658,853 + CA264_15660 0.89 +1.9
3,658,864 + -0.2
3,658,864 + +0.6
3,658,864 + +0.4
3,658,876 + +0.0
3,658,877 - +0.6
3,658,966 + -0.3
3,658,998 + -0.7
3,659,088 + -2.3
3,659,092 + +0.3
3,659,119 - +0.8
3,659,119 - +1.4
3,659,520 + CA264_15670 0.85 +0.5
3,659,520 + CA264_15670 0.85 +2.2
3,659,533 + -1.8
3,659,533 + -1.8
3,659,543 + +0.9
3,659,573 + +0.2
3,659,573 + +0.2
3,659,641 + +0.1

Or see this region's nucleotide sequence