Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_15215

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_15205 and CA264_15210 are separated by 76 nucleotidesCA264_15210 and CA264_15215 are separated by 29 nucleotidesCA264_15215 and CA264_15220 are separated by 17 nucleotides CA264_15205: CA264_15205 - RNA pseudouridine synthase, at 3,562,298 to 3,563,332 _15205 CA264_15210: CA264_15210 - outer membrane chaperone Skp, at 3,563,409 to 3,564,017 _15210 CA264_15215: CA264_15215 - hypothetical protein, at 3,564,047 to 3,564,712 _15215 CA264_15220: CA264_15220 - outer membrane protein assembly factor BamA, at 3,564,730 to 3,567,228 _15220 Position (kb) 3564 3565Strain fitness (log2 ratio) -3 -2 -1 0 1at 3563.121 kb on - strand, within CA264_15205at 3563.186 kb on + strand, within CA264_15205at 3563.186 kb on + strand, within CA264_15205at 3563.187 kb on - strand, within CA264_15205at 3563.372 kb on + strandat 3563.411 kb on - strandat 3563.411 kb on - strandat 3564.030 kb on + strandat 3564.031 kb on - strandat 3564.034 kb on - strandat 3564.036 kb on + strandat 3564.036 kb on + strandat 3564.037 kb on - strandat 3564.038 kb on + strandat 3564.039 kb on - strandat 3564.040 kb on + strandat 3564.187 kb on + strand, within CA264_15215at 3564.258 kb on + strand, within CA264_15215at 3564.286 kb on - strand, within CA264_15215at 3564.326 kb on + strand, within CA264_15215at 3564.339 kb on - strand, within CA264_15215at 3564.396 kb on + strand, within CA264_15215at 3564.418 kb on - strand, within CA264_15215at 3564.570 kb on + strand, within CA264_15215at 3564.600 kb on + strand, within CA264_15215at 3564.614 kb on - strand, within CA264_15215at 3564.614 kb on - strand, within CA264_15215at 3564.614 kb on - strand, within CA264_15215at 3564.715 kb on + strandat 3564.732 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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3,563,121 - CA264_15205 0.80 -0.7
3,563,186 + CA264_15205 0.86 -2.5
3,563,186 + CA264_15205 0.86 -3.0
3,563,187 - CA264_15205 0.86 +1.0
3,563,372 + -0.0
3,563,411 - -0.0
3,563,411 - -0.5
3,564,030 + -2.6
3,564,031 - -1.0
3,564,034 - +0.5
3,564,036 + +0.4
3,564,036 + -0.7
3,564,037 - +0.1
3,564,038 + -1.3
3,564,039 - +0.4
3,564,040 + -1.2
3,564,187 + CA264_15215 0.21 -1.3
3,564,258 + CA264_15215 0.32 -1.1
3,564,286 - CA264_15215 0.36 -0.6
3,564,326 + CA264_15215 0.42 -1.0
3,564,339 - CA264_15215 0.44 -1.7
3,564,396 + CA264_15215 0.52 -1.7
3,564,418 - CA264_15215 0.56 -3.1
3,564,570 + CA264_15215 0.79 -2.1
3,564,600 + CA264_15215 0.83 -0.6
3,564,614 - CA264_15215 0.85 -2.3
3,564,614 - CA264_15215 0.85 -0.0
3,564,614 - CA264_15215 0.85 -0.9
3,564,715 + -2.9
3,564,732 - +0.9

Or see this region's nucleotide sequence