Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14865

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14855 and CA264_14860 are separated by 141 nucleotidesCA264_14860 and CA264_14865 are separated by 59 nucleotidesCA264_14865 and CA264_14870 are separated by 100 nucleotidesCA264_14870 and CA264_14875 are separated by 146 nucleotides CA264_14855: CA264_14855 - hypothetical protein, at 3,489,163 to 3,489,819 _14855 CA264_14860: CA264_14860 - hypothetical protein, at 3,489,961 to 3,490,620 _14860 CA264_14865: CA264_14865 - peptidase dimerization domain protein, at 3,490,680 to 3,492,038 _14865 CA264_14870: CA264_14870 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 3,492,139 to 3,492,786 _14870 CA264_14875: CA264_14875 - hypothetical protein, at 3,492,933 to 3,497,735 _14875 Position (kb) 3490 3491 3492 3493Strain fitness (log2 ratio) -1 0 1 2 3 4at 3489.711 kb on + strand, within CA264_14855at 3489.712 kb on - strand, within CA264_14855at 3489.749 kb on - strand, within CA264_14855at 3489.841 kb on - strandat 3489.909 kb on + strandat 3489.929 kb on - strandat 3489.947 kb on + strandat 3489.991 kb on - strandat 3489.993 kb on - strandat 3490.067 kb on + strand, within CA264_14860at 3490.138 kb on + strand, within CA264_14860at 3490.199 kb on + strand, within CA264_14860at 3490.201 kb on + strand, within CA264_14860at 3490.201 kb on + strand, within CA264_14860at 3490.202 kb on - strand, within CA264_14860at 3490.397 kb on + strand, within CA264_14860at 3490.397 kb on + strand, within CA264_14860at 3490.519 kb on - strand, within CA264_14860at 3490.577 kb on - strandat 3490.681 kb on + strandat 3490.739 kb on - strandat 3490.743 kb on - strandat 3490.743 kb on - strandat 3490.832 kb on + strand, within CA264_14865at 3490.833 kb on - strand, within CA264_14865at 3490.833 kb on - strand, within CA264_14865at 3491.025 kb on - strand, within CA264_14865at 3491.093 kb on + strand, within CA264_14865at 3491.103 kb on - strand, within CA264_14865at 3491.129 kb on - strand, within CA264_14865at 3491.174 kb on + strand, within CA264_14865at 3491.191 kb on + strand, within CA264_14865at 3491.192 kb on - strand, within CA264_14865at 3491.234 kb on + strand, within CA264_14865at 3491.235 kb on - strand, within CA264_14865at 3491.237 kb on - strand, within CA264_14865at 3491.298 kb on + strand, within CA264_14865at 3491.299 kb on - strand, within CA264_14865at 3491.299 kb on - strand, within CA264_14865at 3491.299 kb on - strand, within CA264_14865at 3491.304 kb on - strand, within CA264_14865at 3491.308 kb on + strand, within CA264_14865at 3491.308 kb on + strand, within CA264_14865at 3491.442 kb on + strand, within CA264_14865at 3491.616 kb on - strand, within CA264_14865at 3491.674 kb on + strand, within CA264_14865at 3491.675 kb on - strand, within CA264_14865at 3491.675 kb on - strand, within CA264_14865at 3491.710 kb on + strand, within CA264_14865at 3491.711 kb on - strand, within CA264_14865at 3491.712 kb on + strand, within CA264_14865at 3491.712 kb on + strand, within CA264_14865at 3491.797 kb on + strand, within CA264_14865at 3491.878 kb on - strand, within CA264_14865at 3491.878 kb on - strand, within CA264_14865at 3491.878 kb on - strand, within CA264_14865at 3491.878 kb on - strand, within CA264_14865at 3492.036 kb on + strandat 3492.046 kb on + strandat 3492.046 kb on + strandat 3492.053 kb on + strandat 3492.117 kb on - strandat 3492.117 kb on - strandat 3492.124 kb on - strandat 3492.763 kb on + strandat 3492.769 kb on + strandat 3492.792 kb on + strandat 3492.793 kb on - strandat 3492.793 kb on - strandat 3492.873 kb on + strandat 3492.875 kb on + strandat 3492.904 kb on - strandat 3492.922 kb on - strandat 3492.934 kb on + strandat 3492.935 kb on - strandat 3492.937 kb on - strandat 3492.937 kb on - strandat 3493.013 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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3,489,711 + CA264_14855 0.83 -1.6
3,489,712 - CA264_14855 0.84 -0.2
3,489,749 - CA264_14855 0.89 -0.7
3,489,841 - +0.3
3,489,909 + -0.0
3,489,929 - +0.0
3,489,947 + +1.0
3,489,991 - -0.4
3,489,993 - +0.7
3,490,067 + CA264_14860 0.16 -0.0
3,490,138 + CA264_14860 0.27 +0.0
3,490,199 + CA264_14860 0.36 +3.3
3,490,201 + CA264_14860 0.36 +0.3
3,490,201 + CA264_14860 0.36 -0.3
3,490,202 - CA264_14860 0.37 -0.6
3,490,397 + CA264_14860 0.66 +0.1
3,490,397 + CA264_14860 0.66 -0.3
3,490,519 - CA264_14860 0.85 +0.9
3,490,577 - -0.5
3,490,681 + -0.2
3,490,739 - +1.1
3,490,743 - +1.2
3,490,743 - -1.3
3,490,832 + CA264_14865 0.11 -0.7
3,490,833 - CA264_14865 0.11 +2.4
3,490,833 - CA264_14865 0.11 +1.6
3,491,025 - CA264_14865 0.25 +2.1
3,491,093 + CA264_14865 0.30 +0.4
3,491,103 - CA264_14865 0.31 +0.5
3,491,129 - CA264_14865 0.33 +0.8
3,491,174 + CA264_14865 0.36 +0.6
3,491,191 + CA264_14865 0.38 +1.2
3,491,192 - CA264_14865 0.38 +1.6
3,491,234 + CA264_14865 0.41 +1.0
3,491,235 - CA264_14865 0.41 -0.4
3,491,237 - CA264_14865 0.41 +0.2
3,491,298 + CA264_14865 0.45 +0.1
3,491,299 - CA264_14865 0.46 +2.8
3,491,299 - CA264_14865 0.46 +1.2
3,491,299 - CA264_14865 0.46 -1.3
3,491,304 - CA264_14865 0.46 +1.2
3,491,308 + CA264_14865 0.46 +2.6
3,491,308 + CA264_14865 0.46 +0.6
3,491,442 + CA264_14865 0.56 +1.2
3,491,616 - CA264_14865 0.69 +1.7
3,491,674 + CA264_14865 0.73 +0.5
3,491,675 - CA264_14865 0.73 +0.4
3,491,675 - CA264_14865 0.73 +0.9
3,491,710 + CA264_14865 0.76 +2.0
3,491,711 - CA264_14865 0.76 +1.0
3,491,712 + CA264_14865 0.76 +0.9
3,491,712 + CA264_14865 0.76 +3.2
3,491,797 + CA264_14865 0.82 +0.7
3,491,878 - CA264_14865 0.88 +0.7
3,491,878 - CA264_14865 0.88 +2.6
3,491,878 - CA264_14865 0.88 +0.4
3,491,878 - CA264_14865 0.88 +0.4
3,492,036 + +0.4
3,492,046 + +1.0
3,492,046 + +1.0
3,492,053 + -1.3
3,492,117 - +0.6
3,492,117 - -0.1
3,492,124 - +0.1
3,492,763 + -0.0
3,492,769 + -0.3
3,492,792 + +0.7
3,492,793 - +0.8
3,492,793 - +0.7
3,492,873 + +0.4
3,492,875 + -1.0
3,492,904 - +0.5
3,492,922 - -0.0
3,492,934 + +1.0
3,492,935 - +0.9
3,492,937 - -0.6
3,492,937 - +3.8
3,493,013 + +2.0

Or see this region's nucleotide sequence