Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14855 and CA264_14860 are separated by 141 nucleotides CA264_14860 and CA264_14865 are separated by 59 nucleotides CA264_14865 and CA264_14870 are separated by 100 nucleotides CA264_14870 and CA264_14875 are separated by 146 nucleotides
CA264_14855: CA264_14855 - hypothetical protein, at 3,489,163 to 3,489,819
_14855
CA264_14860: CA264_14860 - hypothetical protein, at 3,489,961 to 3,490,620
_14860
CA264_14865: CA264_14865 - peptidase dimerization domain protein, at 3,490,680 to 3,492,038
_14865
CA264_14870: CA264_14870 - acyl-phosphate glycerol 3-phosphate acyltransferase, at 3,492,139 to 3,492,786
_14870
CA264_14875: CA264_14875 - hypothetical protein, at 3,492,933 to 3,497,735
_14875
Position (kb)
3490
3491
3492
3493 Strain fitness (log2 ratio)
-1
0
1
2
3
4 at 3489.711 kb on + strand, within CA264_14855 at 3489.712 kb on - strand, within CA264_14855 at 3489.749 kb on - strand, within CA264_14855 at 3489.841 kb on - strand at 3489.909 kb on + strand at 3489.929 kb on - strand at 3489.947 kb on + strand at 3489.991 kb on - strand at 3489.993 kb on - strand at 3490.067 kb on + strand, within CA264_14860 at 3490.138 kb on + strand, within CA264_14860 at 3490.199 kb on + strand, within CA264_14860 at 3490.201 kb on + strand, within CA264_14860 at 3490.201 kb on + strand, within CA264_14860 at 3490.202 kb on - strand, within CA264_14860 at 3490.397 kb on + strand, within CA264_14860 at 3490.397 kb on + strand, within CA264_14860 at 3490.519 kb on - strand, within CA264_14860 at 3490.577 kb on - strand at 3490.681 kb on + strand at 3490.739 kb on - strand at 3490.743 kb on - strand at 3490.743 kb on - strand at 3490.832 kb on + strand, within CA264_14865 at 3490.833 kb on - strand, within CA264_14865 at 3490.833 kb on - strand, within CA264_14865 at 3491.025 kb on - strand, within CA264_14865 at 3491.093 kb on + strand, within CA264_14865 at 3491.103 kb on - strand, within CA264_14865 at 3491.129 kb on - strand, within CA264_14865 at 3491.174 kb on + strand, within CA264_14865 at 3491.191 kb on + strand, within CA264_14865 at 3491.192 kb on - strand, within CA264_14865 at 3491.234 kb on + strand, within CA264_14865 at 3491.235 kb on - strand, within CA264_14865 at 3491.237 kb on - strand, within CA264_14865 at 3491.298 kb on + strand, within CA264_14865 at 3491.299 kb on - strand, within CA264_14865 at 3491.299 kb on - strand, within CA264_14865 at 3491.299 kb on - strand, within CA264_14865 at 3491.304 kb on - strand, within CA264_14865 at 3491.308 kb on + strand, within CA264_14865 at 3491.308 kb on + strand, within CA264_14865 at 3491.442 kb on + strand, within CA264_14865 at 3491.616 kb on - strand, within CA264_14865 at 3491.674 kb on + strand, within CA264_14865 at 3491.675 kb on - strand, within CA264_14865 at 3491.675 kb on - strand, within CA264_14865 at 3491.710 kb on + strand, within CA264_14865 at 3491.711 kb on - strand, within CA264_14865 at 3491.712 kb on + strand, within CA264_14865 at 3491.712 kb on + strand, within CA264_14865 at 3491.797 kb on + strand, within CA264_14865 at 3491.878 kb on - strand, within CA264_14865 at 3491.878 kb on - strand, within CA264_14865 at 3491.878 kb on - strand, within CA264_14865 at 3491.878 kb on - strand, within CA264_14865 at 3492.036 kb on + strand at 3492.046 kb on + strand at 3492.046 kb on + strand at 3492.053 kb on + strand at 3492.117 kb on - strand at 3492.117 kb on - strand at 3492.124 kb on - strand at 3492.763 kb on + strand at 3492.769 kb on + strand at 3492.792 kb on + strand at 3492.793 kb on - strand at 3492.793 kb on - strand at 3492.873 kb on + strand at 3492.875 kb on + strand at 3492.904 kb on - strand at 3492.922 kb on - strand at 3492.934 kb on + strand at 3492.935 kb on - strand at 3492.937 kb on - strand at 3492.937 kb on - strand at 3493.013 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 3,489,711 + CA264_14855 0.83 -1.6 3,489,712 - CA264_14855 0.84 -0.2 3,489,749 - CA264_14855 0.89 -0.7 3,489,841 - +0.3 3,489,909 + -0.0 3,489,929 - +0.0 3,489,947 + +1.0 3,489,991 - -0.4 3,489,993 - +0.7 3,490,067 + CA264_14860 0.16 -0.0 3,490,138 + CA264_14860 0.27 +0.0 3,490,199 + CA264_14860 0.36 +3.3 3,490,201 + CA264_14860 0.36 +0.3 3,490,201 + CA264_14860 0.36 -0.3 3,490,202 - CA264_14860 0.37 -0.6 3,490,397 + CA264_14860 0.66 +0.1 3,490,397 + CA264_14860 0.66 -0.3 3,490,519 - CA264_14860 0.85 +0.9 3,490,577 - -0.5 3,490,681 + -0.2 3,490,739 - +1.1 3,490,743 - +1.2 3,490,743 - -1.3 3,490,832 + CA264_14865 0.11 -0.7 3,490,833 - CA264_14865 0.11 +2.4 3,490,833 - CA264_14865 0.11 +1.6 3,491,025 - CA264_14865 0.25 +2.1 3,491,093 + CA264_14865 0.30 +0.4 3,491,103 - CA264_14865 0.31 +0.5 3,491,129 - CA264_14865 0.33 +0.8 3,491,174 + CA264_14865 0.36 +0.6 3,491,191 + CA264_14865 0.38 +1.2 3,491,192 - CA264_14865 0.38 +1.6 3,491,234 + CA264_14865 0.41 +1.0 3,491,235 - CA264_14865 0.41 -0.4 3,491,237 - CA264_14865 0.41 +0.2 3,491,298 + CA264_14865 0.45 +0.1 3,491,299 - CA264_14865 0.46 +2.8 3,491,299 - CA264_14865 0.46 +1.2 3,491,299 - CA264_14865 0.46 -1.3 3,491,304 - CA264_14865 0.46 +1.2 3,491,308 + CA264_14865 0.46 +2.6 3,491,308 + CA264_14865 0.46 +0.6 3,491,442 + CA264_14865 0.56 +1.2 3,491,616 - CA264_14865 0.69 +1.7 3,491,674 + CA264_14865 0.73 +0.5 3,491,675 - CA264_14865 0.73 +0.4 3,491,675 - CA264_14865 0.73 +0.9 3,491,710 + CA264_14865 0.76 +2.0 3,491,711 - CA264_14865 0.76 +1.0 3,491,712 + CA264_14865 0.76 +0.9 3,491,712 + CA264_14865 0.76 +3.2 3,491,797 + CA264_14865 0.82 +0.7 3,491,878 - CA264_14865 0.88 +0.7 3,491,878 - CA264_14865 0.88 +2.6 3,491,878 - CA264_14865 0.88 +0.4 3,491,878 - CA264_14865 0.88 +0.4 3,492,036 + +0.4 3,492,046 + +1.0 3,492,046 + +1.0 3,492,053 + -1.3 3,492,117 - +0.6 3,492,117 - -0.1 3,492,124 - +0.1 3,492,763 + -0.0 3,492,769 + -0.3 3,492,792 + +0.7 3,492,793 - +0.8 3,492,793 - +0.7 3,492,873 + +0.4 3,492,875 + -1.0 3,492,904 - +0.5 3,492,922 - -0.0 3,492,934 + +1.0 3,492,935 - +0.9 3,492,937 - -0.6 3,492,937 - +3.8 3,493,013 + +2.0
Or see this region's nucleotide sequence