Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14785

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14775 and CA264_14780 are separated by 7 nucleotidesCA264_14780 and CA264_14785 are separated by 160 nucleotidesCA264_14785 and CA264_14790 are separated by 138 nucleotides CA264_14775: CA264_14775 - hypothetical protein, at 3,472,806 to 3,473,147 _14775 CA264_14780: CA264_14780 - phosphoheptose isomerase, at 3,473,155 to 3,473,730 _14780 CA264_14785: CA264_14785 - hypothetical protein, at 3,473,891 to 3,474,556 _14785 CA264_14790: CA264_14790 - magnesium chelatase, at 3,474,695 to 3,475,360 _14790 Position (kb) 3473 3474 3475Strain fitness (log2 ratio) -1 0 1 2 3at 3472.945 kb on + strand, within CA264_14775at 3472.951 kb on + strand, within CA264_14775at 3472.967 kb on + strand, within CA264_14775at 3472.970 kb on + strand, within CA264_14775at 3472.970 kb on + strand, within CA264_14775at 3473.001 kb on + strand, within CA264_14775at 3473.048 kb on - strand, within CA264_14775at 3473.167 kb on - strandat 3473.728 kb on + strandat 3473.751 kb on + strandat 3473.843 kb on - strandat 3473.860 kb on + strandat 3473.876 kb on - strandat 3473.902 kb on + strandat 3473.908 kb on - strandat 3474.210 kb on - strand, within CA264_14785at 3474.210 kb on - strand, within CA264_14785at 3474.210 kb on - strand, within CA264_14785at 3474.210 kb on - strand, within CA264_14785at 3474.283 kb on + strand, within CA264_14785at 3474.283 kb on + strand, within CA264_14785at 3474.284 kb on - strand, within CA264_14785at 3474.363 kb on - strand, within CA264_14785at 3474.363 kb on - strand, within CA264_14785at 3474.366 kb on - strand, within CA264_14785at 3474.373 kb on + strand, within CA264_14785at 3474.392 kb on + strand, within CA264_14785at 3474.463 kb on + strand, within CA264_14785at 3474.463 kb on + strand, within CA264_14785at 3474.500 kb on + strandat 3474.628 kb on + strandat 3474.673 kb on - strandat 3474.693 kb on - strandat 3474.741 kb on - strandat 3474.748 kb on + strandat 3474.748 kb on + strandat 3474.749 kb on - strandat 3474.834 kb on + strand, within CA264_14790at 3474.990 kb on + strand, within CA264_14790at 3474.990 kb on + strand, within CA264_14790at 3474.999 kb on - strand, within CA264_14790at 3474.999 kb on - strand, within CA264_14790at 3475.000 kb on + strand, within CA264_14790at 3475.000 kb on + strand, within CA264_14790at 3475.000 kb on + strand, within CA264_14790at 3475.000 kb on + strand, within CA264_14790at 3475.001 kb on - strand, within CA264_14790at 3475.068 kb on + strand, within CA264_14790at 3475.209 kb on + strand, within CA264_14790at 3475.210 kb on - strand, within CA264_14790at 3475.255 kb on - strand, within CA264_14790at 3475.363 kb on + strandat 3475.388 kb on + strandat 3475.389 kb on - strandat 3475.397 kb on + strandat 3475.398 kb on - strandat 3475.398 kb on - strandat 3475.398 kb on - strandat 3475.401 kb on + strandat 3475.402 kb on - strandat 3475.412 kb on - strandat 3475.426 kb on - strandat 3475.426 kb on - strandat 3475.430 kb on + strandat 3475.430 kb on + strandat 3475.431 kb on - strandat 3475.457 kb on - strandat 3475.471 kb on + strandat 3475.471 kb on + strandat 3475.472 kb on - strandat 3475.497 kb on + strandat 3475.498 kb on - strandat 3475.501 kb on + strandat 3475.502 kb on - strandat 3475.502 kb on - strandat 3475.509 kb on + strandat 3475.546 kb on + strandat 3475.552 kb on + strandat 3475.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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3,472,945 + CA264_14775 0.41 -1.0
3,472,951 + CA264_14775 0.42 +1.6
3,472,967 + CA264_14775 0.47 -1.0
3,472,970 + CA264_14775 0.48 -1.0
3,472,970 + CA264_14775 0.48 -0.0
3,473,001 + CA264_14775 0.57 -0.0
3,473,048 - CA264_14775 0.71 -1.3
3,473,167 - -0.6
3,473,728 + -1.3
3,473,751 + +0.5
3,473,843 - +0.5
3,473,860 + -0.0
3,473,876 - +1.0
3,473,902 + -0.0
3,473,908 - +0.4
3,474,210 - CA264_14785 0.48 +1.6
3,474,210 - CA264_14785 0.48 +0.1
3,474,210 - CA264_14785 0.48 -0.0
3,474,210 - CA264_14785 0.48 -0.0
3,474,283 + CA264_14785 0.59 +3.0
3,474,283 + CA264_14785 0.59 +1.0
3,474,284 - CA264_14785 0.59 +0.9
3,474,363 - CA264_14785 0.71 +1.0
3,474,363 - CA264_14785 0.71 +0.0
3,474,366 - CA264_14785 0.71 +1.3
3,474,373 + CA264_14785 0.72 +0.1
3,474,392 + CA264_14785 0.75 -0.1
3,474,463 + CA264_14785 0.86 +0.4
3,474,463 + CA264_14785 0.86 -0.1
3,474,500 + +1.3
3,474,628 + +0.1
3,474,673 - -0.0
3,474,693 - -1.2
3,474,741 - -1.1
3,474,748 + -0.0
3,474,748 + -0.0
3,474,749 - -0.3
3,474,834 + CA264_14790 0.21 +3.3
3,474,990 + CA264_14790 0.44 -1.2
3,474,990 + CA264_14790 0.44 +0.4
3,474,999 - CA264_14790 0.46 -0.0
3,474,999 - CA264_14790 0.46 +0.5
3,475,000 + CA264_14790 0.46 +0.2
3,475,000 + CA264_14790 0.46 +0.7
3,475,000 + CA264_14790 0.46 -0.6
3,475,000 + CA264_14790 0.46 +0.6
3,475,001 - CA264_14790 0.46 -0.2
3,475,068 + CA264_14790 0.56 -1.3
3,475,209 + CA264_14790 0.77 -0.9
3,475,210 - CA264_14790 0.77 -0.4
3,475,255 - CA264_14790 0.84 +0.2
3,475,363 + -0.7
3,475,388 + +1.0
3,475,389 - +0.9
3,475,397 + -0.6
3,475,398 - +1.8
3,475,398 - -0.4
3,475,398 - -1.6
3,475,401 + -0.2
3,475,402 - +0.5
3,475,412 - +0.2
3,475,426 - -1.1
3,475,426 - -0.0
3,475,430 + +0.5
3,475,430 + +0.4
3,475,431 - -0.9
3,475,457 - +1.3
3,475,471 + -0.4
3,475,471 + -0.2
3,475,472 - +0.6
3,475,497 + -0.7
3,475,498 - -0.6
3,475,501 + -1.6
3,475,502 - -0.8
3,475,502 - -0.4
3,475,509 + -0.3
3,475,546 + -0.4
3,475,552 + +0.7
3,475,553 - +0.8

Or see this region's nucleotide sequence