Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_14775 and CA264_14780 are separated by 7 nucleotides CA264_14780 and CA264_14785 are separated by 160 nucleotides CA264_14785 and CA264_14790 are separated by 138 nucleotides
CA264_14775: CA264_14775 - hypothetical protein, at 3,472,806 to 3,473,147
_14775
CA264_14780: CA264_14780 - phosphoheptose isomerase, at 3,473,155 to 3,473,730
_14780
CA264_14785: CA264_14785 - hypothetical protein, at 3,473,891 to 3,474,556
_14785
CA264_14790: CA264_14790 - magnesium chelatase, at 3,474,695 to 3,475,360
_14790
Position (kb)
3473
3474
3475 Strain fitness (log2 ratio)
-1
0
1
2
3 at 3472.945 kb on + strand, within CA264_14775 at 3472.951 kb on + strand, within CA264_14775 at 3472.967 kb on + strand, within CA264_14775 at 3472.970 kb on + strand, within CA264_14775 at 3472.970 kb on + strand, within CA264_14775 at 3473.001 kb on + strand, within CA264_14775 at 3473.048 kb on - strand, within CA264_14775 at 3473.167 kb on - strand at 3473.728 kb on + strand at 3473.751 kb on + strand at 3473.843 kb on - strand at 3473.860 kb on + strand at 3473.876 kb on - strand at 3473.902 kb on + strand at 3473.908 kb on - strand at 3474.210 kb on - strand, within CA264_14785 at 3474.210 kb on - strand, within CA264_14785 at 3474.210 kb on - strand, within CA264_14785 at 3474.210 kb on - strand, within CA264_14785 at 3474.283 kb on + strand, within CA264_14785 at 3474.283 kb on + strand, within CA264_14785 at 3474.284 kb on - strand, within CA264_14785 at 3474.363 kb on - strand, within CA264_14785 at 3474.363 kb on - strand, within CA264_14785 at 3474.366 kb on - strand, within CA264_14785 at 3474.373 kb on + strand, within CA264_14785 at 3474.392 kb on + strand, within CA264_14785 at 3474.463 kb on + strand, within CA264_14785 at 3474.463 kb on + strand, within CA264_14785 at 3474.500 kb on + strand at 3474.628 kb on + strand at 3474.673 kb on - strand at 3474.693 kb on - strand at 3474.741 kb on - strand at 3474.748 kb on + strand at 3474.748 kb on + strand at 3474.749 kb on - strand at 3474.834 kb on + strand, within CA264_14790 at 3474.990 kb on + strand, within CA264_14790 at 3474.990 kb on + strand, within CA264_14790 at 3474.999 kb on - strand, within CA264_14790 at 3474.999 kb on - strand, within CA264_14790 at 3475.000 kb on + strand, within CA264_14790 at 3475.000 kb on + strand, within CA264_14790 at 3475.000 kb on + strand, within CA264_14790 at 3475.000 kb on + strand, within CA264_14790 at 3475.001 kb on - strand, within CA264_14790 at 3475.068 kb on + strand, within CA264_14790 at 3475.209 kb on + strand, within CA264_14790 at 3475.210 kb on - strand, within CA264_14790 at 3475.255 kb on - strand, within CA264_14790 at 3475.363 kb on + strand at 3475.388 kb on + strand at 3475.389 kb on - strand at 3475.397 kb on + strand at 3475.398 kb on - strand at 3475.398 kb on - strand at 3475.398 kb on - strand at 3475.401 kb on + strand at 3475.402 kb on - strand at 3475.412 kb on - strand at 3475.426 kb on - strand at 3475.426 kb on - strand at 3475.430 kb on + strand at 3475.430 kb on + strand at 3475.431 kb on - strand at 3475.457 kb on - strand at 3475.471 kb on + strand at 3475.471 kb on + strand at 3475.472 kb on - strand at 3475.497 kb on + strand at 3475.498 kb on - strand at 3475.501 kb on + strand at 3475.502 kb on - strand at 3475.502 kb on - strand at 3475.509 kb on + strand at 3475.546 kb on + strand at 3475.552 kb on + strand at 3475.553 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 3,472,945 + CA264_14775 0.41 -1.0 3,472,951 + CA264_14775 0.42 +1.6 3,472,967 + CA264_14775 0.47 -1.0 3,472,970 + CA264_14775 0.48 -1.0 3,472,970 + CA264_14775 0.48 -0.0 3,473,001 + CA264_14775 0.57 -0.0 3,473,048 - CA264_14775 0.71 -1.3 3,473,167 - -0.6 3,473,728 + -1.3 3,473,751 + +0.5 3,473,843 - +0.5 3,473,860 + -0.0 3,473,876 - +1.0 3,473,902 + -0.0 3,473,908 - +0.4 3,474,210 - CA264_14785 0.48 +1.6 3,474,210 - CA264_14785 0.48 +0.1 3,474,210 - CA264_14785 0.48 -0.0 3,474,210 - CA264_14785 0.48 -0.0 3,474,283 + CA264_14785 0.59 +3.0 3,474,283 + CA264_14785 0.59 +1.0 3,474,284 - CA264_14785 0.59 +0.9 3,474,363 - CA264_14785 0.71 +1.0 3,474,363 - CA264_14785 0.71 +0.0 3,474,366 - CA264_14785 0.71 +1.3 3,474,373 + CA264_14785 0.72 +0.1 3,474,392 + CA264_14785 0.75 -0.1 3,474,463 + CA264_14785 0.86 +0.4 3,474,463 + CA264_14785 0.86 -0.1 3,474,500 + +1.3 3,474,628 + +0.1 3,474,673 - -0.0 3,474,693 - -1.2 3,474,741 - -1.1 3,474,748 + -0.0 3,474,748 + -0.0 3,474,749 - -0.3 3,474,834 + CA264_14790 0.21 +3.3 3,474,990 + CA264_14790 0.44 -1.2 3,474,990 + CA264_14790 0.44 +0.4 3,474,999 - CA264_14790 0.46 -0.0 3,474,999 - CA264_14790 0.46 +0.5 3,475,000 + CA264_14790 0.46 +0.2 3,475,000 + CA264_14790 0.46 +0.7 3,475,000 + CA264_14790 0.46 -0.6 3,475,000 + CA264_14790 0.46 +0.6 3,475,001 - CA264_14790 0.46 -0.2 3,475,068 + CA264_14790 0.56 -1.3 3,475,209 + CA264_14790 0.77 -0.9 3,475,210 - CA264_14790 0.77 -0.4 3,475,255 - CA264_14790 0.84 +0.2 3,475,363 + -0.7 3,475,388 + +1.0 3,475,389 - +0.9 3,475,397 + -0.6 3,475,398 - +1.8 3,475,398 - -0.4 3,475,398 - -1.6 3,475,401 + -0.2 3,475,402 - +0.5 3,475,412 - +0.2 3,475,426 - -1.1 3,475,426 - -0.0 3,475,430 + +0.5 3,475,430 + +0.4 3,475,431 - -0.9 3,475,457 - +1.3 3,475,471 + -0.4 3,475,471 + -0.2 3,475,472 - +0.6 3,475,497 + -0.7 3,475,498 - -0.6 3,475,501 + -1.6 3,475,502 - -0.8 3,475,502 - -0.4 3,475,509 + -0.3 3,475,546 + -0.4 3,475,552 + +0.7 3,475,553 - +0.8
Or see this region's nucleotide sequence