Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_14775

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_14770 and CA264_14775 are separated by 130 nucleotidesCA264_14775 and CA264_14780 are separated by 7 nucleotidesCA264_14780 and CA264_14785 are separated by 160 nucleotides CA264_14770: CA264_14770 - antibiotic ABC transporter ATP-binding protein, at 3,470,837 to 3,472,675 _14770 CA264_14775: CA264_14775 - hypothetical protein, at 3,472,806 to 3,473,147 _14775 CA264_14780: CA264_14780 - phosphoheptose isomerase, at 3,473,155 to 3,473,730 _14780 CA264_14785: CA264_14785 - hypothetical protein, at 3,473,891 to 3,474,556 _14785 Position (kb) 3472 3473 3474Strain fitness (log2 ratio) -2 -1 0 1at 3472.694 kb on + strandat 3472.697 kb on + strandat 3472.704 kb on + strandat 3472.822 kb on + strandat 3472.822 kb on + strandat 3472.852 kb on + strand, within CA264_14775at 3472.859 kb on + strand, within CA264_14775at 3472.945 kb on + strand, within CA264_14775at 3472.951 kb on + strand, within CA264_14775at 3472.967 kb on + strand, within CA264_14775at 3472.970 kb on + strand, within CA264_14775at 3472.970 kb on + strand, within CA264_14775at 3473.001 kb on + strand, within CA264_14775at 3473.048 kb on - strand, within CA264_14775at 3473.167 kb on - strandat 3473.728 kb on + strandat 3473.751 kb on + strandat 3473.843 kb on - strandat 3473.860 kb on + strandat 3473.876 kb on - strandat 3473.902 kb on + strandat 3473.908 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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3,472,694 + -0.5
3,472,697 + -0.3
3,472,704 + -0.0
3,472,822 + -1.4
3,472,822 + -0.5
3,472,852 + CA264_14775 0.13 -1.9
3,472,859 + CA264_14775 0.15 -1.0
3,472,945 + CA264_14775 0.41 -1.0
3,472,951 + CA264_14775 0.42 +1.6
3,472,967 + CA264_14775 0.47 -1.0
3,472,970 + CA264_14775 0.48 -1.0
3,472,970 + CA264_14775 0.48 -0.0
3,473,001 + CA264_14775 0.57 -0.0
3,473,048 - CA264_14775 0.71 -1.3
3,473,167 - -0.6
3,473,728 + -1.3
3,473,751 + +0.5
3,473,843 - +0.5
3,473,860 + -0.0
3,473,876 - +1.0
3,473,902 + -0.0
3,473,908 - +0.4

Or see this region's nucleotide sequence