Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13925

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13920 and CA264_13925 are separated by 122 nucleotidesCA264_13925 and CA264_13930 are separated by 278 nucleotides CA264_13920: CA264_13920 - PutA protein, at 3,249,192 to 3,250,274 _13920 CA264_13925: CA264_13925 - cytochrome c oxidase subunit I, at 3,250,397 to 3,252,217 _13925 CA264_13930: CA264_13930 - alpha-N-arabinofuranosidase, at 3,252,496 to 3,253,599 _13930 Position (kb) 3250 3251 3252 3253Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3249.481 kb on - strand, within CA264_13920at 3249.481 kb on - strand, within CA264_13920at 3249.496 kb on + strand, within CA264_13920at 3249.637 kb on + strand, within CA264_13920at 3249.640 kb on - strand, within CA264_13920at 3249.640 kb on - strand, within CA264_13920at 3249.708 kb on + strand, within CA264_13920at 3249.771 kb on + strand, within CA264_13920at 3249.844 kb on - strand, within CA264_13920at 3249.970 kb on + strand, within CA264_13920at 3250.011 kb on + strand, within CA264_13920at 3250.133 kb on - strand, within CA264_13920at 3250.140 kb on + strand, within CA264_13920at 3250.184 kb on - strandat 3250.256 kb on - strandat 3250.272 kb on + strandat 3250.381 kb on - strandat 3250.399 kb on - strandat 3250.467 kb on + strandat 3250.494 kb on + strandat 3250.495 kb on - strandat 3250.500 kb on + strandat 3250.524 kb on - strandat 3250.629 kb on + strand, within CA264_13925at 3250.634 kb on - strand, within CA264_13925at 3250.634 kb on - strand, within CA264_13925at 3250.651 kb on + strand, within CA264_13925at 3250.651 kb on + strand, within CA264_13925at 3250.688 kb on + strand, within CA264_13925at 3250.689 kb on - strand, within CA264_13925at 3250.715 kb on - strand, within CA264_13925at 3250.743 kb on + strand, within CA264_13925at 3250.746 kb on + strand, within CA264_13925at 3250.747 kb on - strand, within CA264_13925at 3250.776 kb on + strand, within CA264_13925at 3250.800 kb on + strand, within CA264_13925at 3250.833 kb on + strand, within CA264_13925at 3250.834 kb on - strand, within CA264_13925at 3250.885 kb on - strand, within CA264_13925at 3250.953 kb on + strand, within CA264_13925at 3250.953 kb on + strand, within CA264_13925at 3250.953 kb on + strand, within CA264_13925at 3251.021 kb on - strand, within CA264_13925at 3251.040 kb on - strand, within CA264_13925at 3251.102 kb on - strand, within CA264_13925at 3251.131 kb on + strand, within CA264_13925at 3251.131 kb on + strand, within CA264_13925at 3251.131 kb on + strand, within CA264_13925at 3251.205 kb on - strand, within CA264_13925at 3251.236 kb on + strand, within CA264_13925at 3251.324 kb on - strand, within CA264_13925at 3251.331 kb on + strand, within CA264_13925at 3251.331 kb on + strand, within CA264_13925at 3251.332 kb on - strand, within CA264_13925at 3251.418 kb on + strand, within CA264_13925at 3251.418 kb on + strand, within CA264_13925at 3251.419 kb on - strand, within CA264_13925at 3251.419 kb on - strand, within CA264_13925at 3251.599 kb on + strand, within CA264_13925at 3251.599 kb on + strand, within CA264_13925at 3251.600 kb on - strand, within CA264_13925at 3251.600 kb on - strand, within CA264_13925at 3251.602 kb on - strand, within CA264_13925at 3251.602 kb on - strand, within CA264_13925at 3251.602 kb on - strand, within CA264_13925at 3251.602 kb on - strand, within CA264_13925at 3251.771 kb on + strand, within CA264_13925at 3251.771 kb on + strand, within CA264_13925at 3252.094 kb on - strandat 3252.094 kb on - strandat 3252.186 kb on - strandat 3252.209 kb on - strandat 3252.234 kb on - strandat 3252.254 kb on + strandat 3252.287 kb on + strandat 3252.302 kb on - strandat 3252.363 kb on - strandat 3252.497 kb on + strandat 3252.526 kb on + strandat 3252.526 kb on + strandat 3252.527 kb on - strandat 3252.527 kb on - strandat 3252.553 kb on - strandat 3252.554 kb on + strandat 3252.569 kb on - strandat 3252.594 kb on + strandat 3252.636 kb on + strand, within CA264_13930at 3252.636 kb on + strand, within CA264_13930at 3252.636 kb on + strand, within CA264_13930at 3252.636 kb on + strand, within CA264_13930at 3252.637 kb on - strand, within CA264_13930at 3252.637 kb on - strand, within CA264_13930at 3252.695 kb on - strand, within CA264_13930at 3252.770 kb on + strand, within CA264_13930at 3252.779 kb on + strand, within CA264_13930at 3252.779 kb on + strand, within CA264_13930at 3252.783 kb on - strand, within CA264_13930at 3252.794 kb on + strand, within CA264_13930at 3252.794 kb on + strand, within CA264_13930at 3252.794 kb on + strand, within CA264_13930at 3252.795 kb on - strand, within CA264_13930at 3252.798 kb on + strand, within CA264_13930at 3252.798 kb on + strand, within CA264_13930at 3252.798 kb on + strand, within CA264_13930at 3252.798 kb on + strand, within CA264_13930at 3252.855 kb on + strand, within CA264_13930at 3252.864 kb on + strand, within CA264_13930at 3252.864 kb on + strand, within CA264_13930at 3252.869 kb on - strand, within CA264_13930at 3252.933 kb on + strand, within CA264_13930at 3252.965 kb on + strand, within CA264_13930at 3252.983 kb on + strand, within CA264_13930at 3253.024 kb on - strand, within CA264_13930at 3253.024 kb on - strand, within CA264_13930at 3253.034 kb on + strand, within CA264_13930at 3253.034 kb on + strand, within CA264_13930at 3253.040 kb on + strand, within CA264_13930at 3253.040 kb on + strand, within CA264_13930at 3253.041 kb on - strand, within CA264_13930at 3253.041 kb on - strand, within CA264_13930at 3253.044 kb on - strand, within CA264_13930at 3253.078 kb on + strand, within CA264_13930at 3253.078 kb on + strand, within CA264_13930at 3253.079 kb on - strand, within CA264_13930at 3253.083 kb on + strand, within CA264_13930at 3253.083 kb on + strand, within CA264_13930at 3253.083 kb on + strand, within CA264_13930at 3253.084 kb on - strand, within CA264_13930at 3253.084 kb on - strand, within CA264_13930at 3253.085 kb on + strand, within CA264_13930at 3253.085 kb on + strand, within CA264_13930at 3253.086 kb on - strand, within CA264_13930at 3253.174 kb on - strand, within CA264_13930at 3253.199 kb on + strand, within CA264_13930at 3253.200 kb on - strand, within CA264_13930at 3253.203 kb on + strand, within CA264_13930at 3253.203 kb on + strand, within CA264_13930at 3253.204 kb on - strand, within CA264_13930

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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3,249,481 - CA264_13920 0.27 +0.0
3,249,481 - CA264_13920 0.27 +0.3
3,249,496 + CA264_13920 0.28 +0.3
3,249,637 + CA264_13920 0.41 -0.0
3,249,640 - CA264_13920 0.41 +0.9
3,249,640 - CA264_13920 0.41 +0.5
3,249,708 + CA264_13920 0.48 +0.3
3,249,771 + CA264_13920 0.53 -0.1
3,249,844 - CA264_13920 0.60 +0.0
3,249,970 + CA264_13920 0.72 +0.3
3,250,011 + CA264_13920 0.76 -2.3
3,250,133 - CA264_13920 0.87 -0.8
3,250,140 + CA264_13920 0.88 +0.4
3,250,184 - +0.4
3,250,256 - +1.3
3,250,272 + +0.4
3,250,381 - -1.1
3,250,399 - +0.1
3,250,467 + -0.2
3,250,494 + +0.9
3,250,495 - +1.6
3,250,500 + -0.7
3,250,524 - -0.4
3,250,629 + CA264_13925 0.13 -0.3
3,250,634 - CA264_13925 0.13 +1.5
3,250,634 - CA264_13925 0.13 -0.7
3,250,651 + CA264_13925 0.14 -0.4
3,250,651 + CA264_13925 0.14 -0.4
3,250,688 + CA264_13925 0.16 -0.4
3,250,689 - CA264_13925 0.16 -0.9
3,250,715 - CA264_13925 0.17 +0.2
3,250,743 + CA264_13925 0.19 -2.4
3,250,746 + CA264_13925 0.19 -0.9
3,250,747 - CA264_13925 0.19 -0.0
3,250,776 + CA264_13925 0.21 +0.7
3,250,800 + CA264_13925 0.22 -1.3
3,250,833 + CA264_13925 0.24 +0.3
3,250,834 - CA264_13925 0.24 +0.7
3,250,885 - CA264_13925 0.27 +0.4
3,250,953 + CA264_13925 0.31 -0.6
3,250,953 + CA264_13925 0.31 +0.4
3,250,953 + CA264_13925 0.31 -0.2
3,251,021 - CA264_13925 0.34 -0.9
3,251,040 - CA264_13925 0.35 -0.1
3,251,102 - CA264_13925 0.39 +1.7
3,251,131 + CA264_13925 0.40 -0.1
3,251,131 + CA264_13925 0.40 +0.7
3,251,131 + CA264_13925 0.40 -0.8
3,251,205 - CA264_13925 0.44 -0.3
3,251,236 + CA264_13925 0.46 +1.3
3,251,324 - CA264_13925 0.51 -1.6
3,251,331 + CA264_13925 0.51 -0.1
3,251,331 + CA264_13925 0.51 +0.9
3,251,332 - CA264_13925 0.51 +0.0
3,251,418 + CA264_13925 0.56 +0.1
3,251,418 + CA264_13925 0.56 +2.9
3,251,419 - CA264_13925 0.56 -0.3
3,251,419 - CA264_13925 0.56 +1.2
3,251,599 + CA264_13925 0.66 -0.4
3,251,599 + CA264_13925 0.66 -0.3
3,251,600 - CA264_13925 0.66 +1.8
3,251,600 - CA264_13925 0.66 -0.7
3,251,602 - CA264_13925 0.66 -0.0
3,251,602 - CA264_13925 0.66 -0.5
3,251,602 - CA264_13925 0.66 +0.9
3,251,602 - CA264_13925 0.66 +0.3
3,251,771 + CA264_13925 0.75 +1.7
3,251,771 + CA264_13925 0.75 -0.1
3,252,094 - -0.9
3,252,094 - -0.5
3,252,186 - -0.7
3,252,209 - +0.9
3,252,234 - -0.3
3,252,254 + +0.3
3,252,287 + -0.5
3,252,302 - -0.5
3,252,363 - +0.0
3,252,497 + -0.7
3,252,526 + -1.1
3,252,526 + -0.4
3,252,527 - +0.3
3,252,527 - +1.2
3,252,553 - -0.1
3,252,554 + +0.4
3,252,569 - +0.0
3,252,594 + +0.7
3,252,636 + CA264_13930 0.13 +0.4
3,252,636 + CA264_13930 0.13 -1.1
3,252,636 + CA264_13930 0.13 -1.1
3,252,636 + CA264_13930 0.13 -0.2
3,252,637 - CA264_13930 0.13 +0.5
3,252,637 - CA264_13930 0.13 +0.4
3,252,695 - CA264_13930 0.18 -0.8
3,252,770 + CA264_13930 0.25 -0.0
3,252,779 + CA264_13930 0.26 -1.1
3,252,779 + CA264_13930 0.26 +0.4
3,252,783 - CA264_13930 0.26 -0.7
3,252,794 + CA264_13930 0.27 +1.3
3,252,794 + CA264_13930 0.27 +0.3
3,252,794 + CA264_13930 0.27 +0.9
3,252,795 - CA264_13930 0.27 -0.9
3,252,798 + CA264_13930 0.27 -0.1
3,252,798 + CA264_13930 0.27 -0.1
3,252,798 + CA264_13930 0.27 -0.8
3,252,798 + CA264_13930 0.27 -0.8
3,252,855 + CA264_13930 0.33 +0.1
3,252,864 + CA264_13930 0.33 -0.7
3,252,864 + CA264_13930 0.33 +1.7
3,252,869 - CA264_13930 0.34 +0.6
3,252,933 + CA264_13930 0.40 -1.4
3,252,965 + CA264_13930 0.42 +0.9
3,252,983 + CA264_13930 0.44 +0.9
3,253,024 - CA264_13930 0.48 +0.4
3,253,024 - CA264_13930 0.48 +0.0
3,253,034 + CA264_13930 0.49 -0.2
3,253,034 + CA264_13930 0.49 +1.5
3,253,040 + CA264_13930 0.49 -0.4
3,253,040 + CA264_13930 0.49 -0.4
3,253,041 - CA264_13930 0.49 -1.4
3,253,041 - CA264_13930 0.49 +0.2
3,253,044 - CA264_13930 0.50 -0.9
3,253,078 + CA264_13930 0.53 +0.9
3,253,078 + CA264_13930 0.53 -0.0
3,253,079 - CA264_13930 0.53 +0.3
3,253,083 + CA264_13930 0.53 +0.0
3,253,083 + CA264_13930 0.53 -1.1
3,253,083 + CA264_13930 0.53 -1.0
3,253,084 - CA264_13930 0.53 +0.4
3,253,084 - CA264_13930 0.53 -1.7
3,253,085 + CA264_13930 0.53 -0.2
3,253,085 + CA264_13930 0.53 +0.5
3,253,086 - CA264_13930 0.53 +0.4
3,253,174 - CA264_13930 0.61 -1.2
3,253,199 + CA264_13930 0.64 +0.9
3,253,200 - CA264_13930 0.64 -0.2
3,253,203 + CA264_13930 0.64 -0.1
3,253,203 + CA264_13930 0.64 +0.7
3,253,204 - CA264_13930 0.64 +0.1

Or see this region's nucleotide sequence