Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13480

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13475 and CA264_13480 are separated by 151 nucleotidesCA264_13480 and CA264_13485 are separated by 377 nucleotides CA264_13475: CA264_13475 - serine acetyltransferase, at 3,147,208 to 3,148,041 _13475 CA264_13480: CA264_13480 - hypothetical protein, at 3,148,193 to 3,148,840 _13480 CA264_13485: CA264_13485 - hypothetical protein, at 3,149,218 to 3,150,390 _13485 Position (kb) 3148 3149Strain fitness (log2 ratio) -2 -1 0 1at 3148.058 kb on + strandat 3148.078 kb on + strandat 3148.108 kb on - strandat 3148.113 kb on - strandat 3148.133 kb on + strandat 3148.133 kb on + strandat 3148.134 kb on - strandat 3148.175 kb on + strandat 3148.184 kb on - strandat 3148.465 kb on + strand, within CA264_13480at 3148.465 kb on + strand, within CA264_13480at 3148.564 kb on + strand, within CA264_13480at 3148.630 kb on - strand, within CA264_13480at 3148.687 kb on - strand, within CA264_13480at 3148.852 kb on + strandat 3148.853 kb on - strandat 3148.910 kb on + strandat 3148.939 kb on + strandat 3148.955 kb on - strandat 3148.956 kb on + strandat 3148.956 kb on + strandat 3148.957 kb on - strandat 3148.979 kb on - strandat 3149.002 kb on + strandat 3149.003 kb on - strandat 3149.008 kb on + strandat 3149.009 kb on - strandat 3149.010 kb on + strandat 3149.011 kb on - strandat 3149.011 kb on - strandat 3149.019 kb on + strandat 3149.035 kb on + strandat 3149.124 kb on - strandat 3149.177 kb on + strandat 3149.178 kb on - strandat 3149.253 kb on + strandat 3149.254 kb on - strandat 3149.255 kb on + strandat 3149.333 kb on + strandat 3149.341 kb on - strand, within CA264_13485at 3149.404 kb on + strand, within CA264_13485at 3149.405 kb on - strand, within CA264_13485at 3149.405 kb on - strand, within CA264_13485at 3149.405 kb on - strand, within CA264_13485at 3149.427 kb on - strand, within CA264_13485at 3149.427 kb on - strand, within CA264_13485at 3149.522 kb on + strand, within CA264_13485at 3149.543 kb on + strand, within CA264_13485at 3149.543 kb on + strand, within CA264_13485at 3149.560 kb on - strand, within CA264_13485at 3149.560 kb on - strand, within CA264_13485at 3149.815 kb on + strand, within CA264_13485at 3149.819 kb on + strand, within CA264_13485

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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3,148,058 + +0.7
3,148,078 + -0.7
3,148,108 - +0.2
3,148,113 - +0.2
3,148,133 + -0.1
3,148,133 + -0.8
3,148,134 - -0.3
3,148,175 + -1.3
3,148,184 - -0.7
3,148,465 + CA264_13480 0.42 +1.1
3,148,465 + CA264_13480 0.42 -1.4
3,148,564 + CA264_13480 0.57 +0.6
3,148,630 - CA264_13480 0.67 -0.2
3,148,687 - CA264_13480 0.76 +0.9
3,148,852 + +0.8
3,148,853 - +0.7
3,148,910 + -0.8
3,148,939 + +0.4
3,148,955 - -0.2
3,148,956 + +0.3
3,148,956 + -0.2
3,148,957 - -1.9
3,148,979 - -0.7
3,149,002 + +1.3
3,149,003 - -0.3
3,149,008 + -0.2
3,149,009 - -0.2
3,149,010 + +0.1
3,149,011 - -0.3
3,149,011 - +0.2
3,149,019 + -1.0
3,149,035 + -1.6
3,149,124 - +0.0
3,149,177 + +1.4
3,149,178 - -0.1
3,149,253 + -0.1
3,149,254 - -0.2
3,149,255 + -0.4
3,149,333 + -0.8
3,149,341 - CA264_13485 0.10 -0.1
3,149,404 + CA264_13485 0.16 +0.2
3,149,405 - CA264_13485 0.16 -0.1
3,149,405 - CA264_13485 0.16 +0.2
3,149,405 - CA264_13485 0.16 -1.0
3,149,427 - CA264_13485 0.18 -0.1
3,149,427 - CA264_13485 0.18 +0.1
3,149,522 + CA264_13485 0.26 +0.3
3,149,543 + CA264_13485 0.28 +0.8
3,149,543 + CA264_13485 0.28 -1.4
3,149,560 - CA264_13485 0.29 +0.4
3,149,560 - CA264_13485 0.29 -0.7
3,149,815 + CA264_13485 0.51 +0.2
3,149,819 + CA264_13485 0.51 +0.8

Or see this region's nucleotide sequence