Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13165

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13155 and CA264_13160 are separated by 52 nucleotidesCA264_13160 and CA264_13165 are separated by 69 nucleotidesCA264_13165 and CA264_13170 are separated by 112 nucleotidesCA264_13170 and CA264_13175 are separated by 237 nucleotides CA264_13155: CA264_13155 - response regulator, at 3,066,252 to 3,066,683 _13155 CA264_13160: CA264_13160 - hypothetical protein, at 3,066,736 to 3,067,341 _13160 CA264_13165: CA264_13165 - arylesterase, at 3,067,411 to 3,067,962 _13165 CA264_13170: CA264_13170 - hypothetical protein, at 3,068,075 to 3,068,527 _13170 CA264_13175: CA264_13175 - tail-specific protease, at 3,068,765 to 3,070,867 _13175 Position (kb) 3067 3068Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3066.489 kb on + strand, within CA264_13155at 3066.562 kb on + strand, within CA264_13155at 3066.579 kb on + strand, within CA264_13155at 3066.600 kb on - strand, within CA264_13155at 3066.663 kb on - strandat 3066.695 kb on - strandat 3066.730 kb on + strandat 3066.730 kb on + strandat 3066.731 kb on - strandat 3066.744 kb on + strandat 3066.744 kb on + strandat 3066.752 kb on + strandat 3066.837 kb on + strand, within CA264_13160at 3066.890 kb on + strand, within CA264_13160at 3066.891 kb on - strand, within CA264_13160at 3066.966 kb on + strand, within CA264_13160at 3067.003 kb on + strand, within CA264_13160at 3067.045 kb on + strand, within CA264_13160at 3067.047 kb on + strand, within CA264_13160at 3067.047 kb on + strand, within CA264_13160at 3067.047 kb on + strand, within CA264_13160at 3067.047 kb on + strand, within CA264_13160at 3067.048 kb on - strand, within CA264_13160at 3067.052 kb on + strand, within CA264_13160at 3067.052 kb on + strand, within CA264_13160at 3067.052 kb on + strand, within CA264_13160at 3067.337 kb on + strandat 3067.337 kb on + strandat 3067.338 kb on - strandat 3067.338 kb on - strandat 3067.340 kb on - strandat 3067.340 kb on - strandat 3067.440 kb on + strandat 3067.441 kb on - strandat 3067.539 kb on + strand, within CA264_13165at 3067.546 kb on + strand, within CA264_13165at 3067.547 kb on - strand, within CA264_13165at 3067.547 kb on - strand, within CA264_13165at 3067.576 kb on + strand, within CA264_13165at 3067.641 kb on + strand, within CA264_13165at 3067.847 kb on + strand, within CA264_13165at 3067.847 kb on + strand, within CA264_13165at 3067.847 kb on + strand, within CA264_13165at 3067.847 kb on + strand, within CA264_13165at 3067.856 kb on + strand, within CA264_13165at 3067.857 kb on - strand, within CA264_13165at 3067.883 kb on - strand, within CA264_13165at 3067.945 kb on + strandat 3067.945 kb on + strandat 3067.945 kb on + strandat 3067.946 kb on - strandat 3067.946 kb on - strandat 3067.951 kb on + strandat 3067.952 kb on - strandat 3068.037 kb on - strandat 3068.076 kb on + strandat 3068.199 kb on + strand, within CA264_13170at 3068.353 kb on + strand, within CA264_13170at 3068.354 kb on - strand, within CA264_13170at 3068.410 kb on - strand, within CA264_13170at 3068.462 kb on + strand, within CA264_13170at 3068.463 kb on - strand, within CA264_13170at 3068.505 kb on - strandat 3068.521 kb on + strandat 3068.528 kb on - strandat 3068.542 kb on - strandat 3068.547 kb on - strandat 3068.552 kb on - strandat 3068.556 kb on + strandat 3068.556 kb on + strandat 3068.556 kb on + strandat 3068.556 kb on + strandat 3068.558 kb on + strandat 3068.587 kb on - strandat 3068.591 kb on + strandat 3068.596 kb on + strandat 3068.620 kb on + strandat 3068.621 kb on - strandat 3068.668 kb on + strandat 3068.669 kb on - strandat 3068.686 kb on + strandat 3068.686 kb on + strandat 3068.686 kb on + strandat 3068.687 kb on - strandat 3068.687 kb on - strandat 3068.687 kb on - strandat 3068.692 kb on - strandat 3068.713 kb on - strandat 3068.738 kb on - strandat 3068.738 kb on - strandat 3068.754 kb on + strandat 3068.758 kb on + strandat 3068.759 kb on - strandat 3068.762 kb on + strandat 3068.763 kb on - strandat 3068.836 kb on + strandat 3068.843 kb on + strandat 3068.843 kb on + strandat 3068.846 kb on - strandat 3068.908 kb on + strandat 3068.908 kb on + strandat 3068.909 kb on - strandat 3068.922 kb on - strandat 3068.937 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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3,066,489 + CA264_13155 0.55 -0.6
3,066,562 + CA264_13155 0.72 -2.9
3,066,579 + CA264_13155 0.76 -0.4
3,066,600 - CA264_13155 0.81 -1.0
3,066,663 - -0.1
3,066,695 - -0.5
3,066,730 + -0.2
3,066,730 + +0.5
3,066,731 - -0.2
3,066,744 + +2.9
3,066,744 + -0.7
3,066,752 + -0.5
3,066,837 + CA264_13160 0.17 -0.0
3,066,890 + CA264_13160 0.25 +0.8
3,066,891 - CA264_13160 0.26 +0.9
3,066,966 + CA264_13160 0.38 -0.3
3,067,003 + CA264_13160 0.44 +1.9
3,067,045 + CA264_13160 0.51 +0.7
3,067,047 + CA264_13160 0.51 +0.9
3,067,047 + CA264_13160 0.51 -0.4
3,067,047 + CA264_13160 0.51 +0.1
3,067,047 + CA264_13160 0.51 -0.3
3,067,048 - CA264_13160 0.51 +0.9
3,067,052 + CA264_13160 0.52 -0.9
3,067,052 + CA264_13160 0.52 -0.7
3,067,052 + CA264_13160 0.52 +0.1
3,067,337 + -0.1
3,067,337 + +0.5
3,067,338 - +1.3
3,067,338 - +1.2
3,067,340 - -0.6
3,067,340 - -0.6
3,067,440 + +0.3
3,067,441 - +0.9
3,067,539 + CA264_13165 0.23 +0.9
3,067,546 + CA264_13165 0.24 +0.5
3,067,547 - CA264_13165 0.25 -0.1
3,067,547 - CA264_13165 0.25 -0.6
3,067,576 + CA264_13165 0.30 +0.9
3,067,641 + CA264_13165 0.42 +0.7
3,067,847 + CA264_13165 0.79 +1.1
3,067,847 + CA264_13165 0.79 +1.8
3,067,847 + CA264_13165 0.79 +3.7
3,067,847 + CA264_13165 0.79 -3.2
3,067,856 + CA264_13165 0.81 +1.0
3,067,857 - CA264_13165 0.81 +0.7
3,067,883 - CA264_13165 0.86 +0.3
3,067,945 + +1.0
3,067,945 + +1.2
3,067,945 + +1.0
3,067,946 - +0.4
3,067,946 - -0.6
3,067,951 + +0.6
3,067,952 - +1.5
3,068,037 - -1.1
3,068,076 + +1.7
3,068,199 + CA264_13170 0.27 +2.4
3,068,353 + CA264_13170 0.61 +2.6
3,068,354 - CA264_13170 0.62 -2.1
3,068,410 - CA264_13170 0.74 +0.5
3,068,462 + CA264_13170 0.85 +2.4
3,068,463 - CA264_13170 0.86 +1.5
3,068,505 - +0.9
3,068,521 + +1.7
3,068,528 - +0.2
3,068,542 - +1.4
3,068,547 - +0.7
3,068,552 - +1.9
3,068,556 + +2.2
3,068,556 + +1.6
3,068,556 + +0.2
3,068,556 + +1.7
3,068,558 + +1.7
3,068,587 - +1.3
3,068,591 + +4.2
3,068,596 + +2.5
3,068,620 + +1.6
3,068,621 - +2.9
3,068,668 + +1.9
3,068,669 - +1.9
3,068,686 + +1.9
3,068,686 + +1.8
3,068,686 + +0.9
3,068,687 - +1.4
3,068,687 - -0.3
3,068,687 - +1.4
3,068,692 - +0.4
3,068,713 - +0.9
3,068,738 - +0.5
3,068,738 - +1.1
3,068,754 + -0.2
3,068,758 + +2.1
3,068,759 - +0.4
3,068,762 + -2.1
3,068,763 - -0.7
3,068,836 + -2.1
3,068,843 + -3.1
3,068,843 + -1.8
3,068,846 - -0.1
3,068,908 + -2.9
3,068,908 + -4.6
3,068,909 - -3.1
3,068,922 - -0.1
3,068,937 + -3.3

Or see this region's nucleotide sequence