Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_13025 and CA264_13030 are separated by 297 nucleotides CA264_13030 and CA264_13035 are separated by 193 nucleotides CA264_13035 and CA264_13040 are separated by 99 nucleotides
CA264_13025: CA264_13025 - hypothetical protein, at 3,034,496 to 3,035,083
_13025
CA264_13030: CA264_13030 - cysteine methyltransferase, at 3,035,381 to 3,035,722
_13030
CA264_13035: CA264_13035 - MexH family multidrug efflux RND transporter periplasmic adaptor subunit, at 3,035,916 to 3,036,998
_13035
CA264_13040: CA264_13040 - acriflavin resistance protein, at 3,037,098 to 3,040,205
_13040
Position (kb)
3035
3036
3037 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3034.959 kb on - strand, within CA264_13025 at 3035.048 kb on + strand at 3035.049 kb on - strand at 3035.049 kb on - strand at 3035.059 kb on - strand at 3035.059 kb on - strand at 3035.074 kb on + strand at 3035.081 kb on + strand at 3035.082 kb on - strand at 3035.130 kb on + strand at 3035.145 kb on + strand at 3035.148 kb on - strand at 3035.224 kb on + strand at 3035.273 kb on - strand at 3035.273 kb on - strand at 3035.273 kb on - strand at 3035.318 kb on - strand at 3035.361 kb on + strand at 3035.361 kb on + strand at 3035.362 kb on - strand at 3035.615 kb on + strand, within CA264_13030 at 3035.770 kb on + strand at 3035.771 kb on - strand at 3035.790 kb on + strand at 3035.790 kb on + strand at 3035.790 kb on + strand at 3035.813 kb on - strand at 3035.828 kb on + strand at 3035.829 kb on - strand at 3035.835 kb on - strand at 3035.840 kb on + strand at 3035.840 kb on + strand at 3035.841 kb on - strand at 3035.842 kb on + strand at 3035.842 kb on + strand at 3036.185 kb on + strand, within CA264_13035 at 3036.214 kb on + strand, within CA264_13035 at 3036.215 kb on - strand, within CA264_13035 at 3036.321 kb on + strand, within CA264_13035 at 3036.321 kb on + strand, within CA264_13035 at 3036.322 kb on - strand, within CA264_13035 at 3036.322 kb on - strand, within CA264_13035 at 3036.339 kb on + strand, within CA264_13035 at 3036.340 kb on - strand, within CA264_13035 at 3036.414 kb on + strand, within CA264_13035 at 3036.415 kb on - strand, within CA264_13035 at 3036.415 kb on - strand, within CA264_13035 at 3036.471 kb on + strand, within CA264_13035 at 3036.471 kb on + strand, within CA264_13035 at 3036.471 kb on + strand, within CA264_13035 at 3036.471 kb on + strand, within CA264_13035 at 3036.471 kb on + strand, within CA264_13035 at 3036.472 kb on - strand, within CA264_13035 at 3036.580 kb on + strand, within CA264_13035 at 3036.581 kb on - strand, within CA264_13035 at 3036.627 kb on + strand, within CA264_13035 at 3036.632 kb on + strand, within CA264_13035 at 3036.673 kb on + strand, within CA264_13035 at 3036.706 kb on + strand, within CA264_13035 at 3036.707 kb on - strand, within CA264_13035 at 3036.786 kb on - strand, within CA264_13035 at 3036.888 kb on - strand, within CA264_13035 at 3036.888 kb on - strand, within CA264_13035 at 3036.935 kb on - strand at 3036.958 kb on + strand at 3036.958 kb on + strand at 3036.959 kb on - strand at 3036.975 kb on - strand at 3036.996 kb on + strand at 3036.997 kb on - strand at 3037.040 kb on + strand at 3037.041 kb on - strand at 3037.041 kb on - strand at 3037.041 kb on - strand at 3037.063 kb on - strand at 3037.063 kb on - strand at 3037.063 kb on - strand at 3037.063 kb on - strand at 3037.067 kb on - strand at 3037.118 kb on + strand at 3037.119 kb on - strand at 3037.121 kb on - strand at 3037.151 kb on + strand at 3037.166 kb on - strand at 3037.189 kb on - strand at 3037.286 kb on + strand at 3037.307 kb on + strand at 3037.307 kb on + strand at 3037.308 kb on - strand at 3037.308 kb on - strand at 3037.308 kb on - strand at 3037.308 kb on - strand at 3037.311 kb on - strand at 3037.371 kb on - strand at 3037.394 kb on - strand at 3037.508 kb on + strand, within CA264_13040 at 3037.796 kb on + strand, within CA264_13040 at 3037.932 kb on - strand, within CA264_13040 at 3037.932 kb on - strand, within CA264_13040 at 3037.967 kb on + strand, within CA264_13040 at 3037.968 kb on - strand, within CA264_13040
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 3,034,959 - CA264_13025 0.79 -0.3 3,035,048 + -0.2 3,035,049 - +0.1 3,035,049 - -0.8 3,035,059 - -0.1 3,035,059 - +0.2 3,035,074 + -0.5 3,035,081 + -0.2 3,035,082 - +0.1 3,035,130 + -0.1 3,035,145 + -0.0 3,035,148 - -0.1 3,035,224 + -0.8 3,035,273 - -0.3 3,035,273 - +0.1 3,035,273 - -0.0 3,035,318 - +0.2 3,035,361 + -3.0 3,035,361 + -1.1 3,035,362 - +0.1 3,035,615 + CA264_13030 0.68 +0.1 3,035,770 + +0.6 3,035,771 - +0.5 3,035,790 + -0.0 3,035,790 + -1.1 3,035,790 + -2.8 3,035,813 - -0.5 3,035,828 + +1.2 3,035,829 - -1.1 3,035,835 - +0.0 3,035,840 + -0.1 3,035,840 + +0.5 3,035,841 - -0.5 3,035,842 + +0.5 3,035,842 + +0.3 3,036,185 + CA264_13035 0.25 +0.2 3,036,214 + CA264_13035 0.28 -0.7 3,036,215 - CA264_13035 0.28 -1.4 3,036,321 + CA264_13035 0.37 +0.8 3,036,321 + CA264_13035 0.37 -1.4 3,036,322 - CA264_13035 0.37 -1.1 3,036,322 - CA264_13035 0.37 -0.7 3,036,339 + CA264_13035 0.39 -0.1 3,036,340 - CA264_13035 0.39 +0.1 3,036,414 + CA264_13035 0.46 +1.3 3,036,415 - CA264_13035 0.46 -0.1 3,036,415 - CA264_13035 0.46 -0.6 3,036,471 + CA264_13035 0.51 +0.4 3,036,471 + CA264_13035 0.51 -0.7 3,036,471 + CA264_13035 0.51 -1.4 3,036,471 + CA264_13035 0.51 +0.6 3,036,471 + CA264_13035 0.51 -0.7 3,036,472 - CA264_13035 0.51 -0.6 3,036,580 + CA264_13035 0.61 -0.7 3,036,581 - CA264_13035 0.61 +0.3 3,036,627 + CA264_13035 0.66 +0.2 3,036,632 + CA264_13035 0.66 +0.6 3,036,673 + CA264_13035 0.70 +0.2 3,036,706 + CA264_13035 0.73 -2.7 3,036,707 - CA264_13035 0.73 -0.7 3,036,786 - CA264_13035 0.80 -1.4 3,036,888 - CA264_13035 0.90 -0.1 3,036,888 - CA264_13035 0.90 -0.5 3,036,935 - -0.2 3,036,958 + -0.7 3,036,958 + -0.5 3,036,959 - -0.4 3,036,975 - +0.5 3,036,996 + -0.2 3,036,997 - -0.8 3,037,040 + -1.8 3,037,041 - +1.1 3,037,041 - +0.5 3,037,041 - +1.2 3,037,063 - +0.1 3,037,063 - +0.3 3,037,063 - +0.4 3,037,063 - +0.1 3,037,067 - -0.4 3,037,118 + +0.9 3,037,119 - -1.1 3,037,121 - -0.4 3,037,151 + +0.4 3,037,166 - -1.3 3,037,189 - -0.7 3,037,286 + +0.5 3,037,307 + -0.5 3,037,307 + -0.3 3,037,308 - -1.1 3,037,308 - +0.1 3,037,308 - -0.3 3,037,308 - -0.5 3,037,311 - -0.8 3,037,371 - +1.6 3,037,394 - -1.6 3,037,508 + CA264_13040 0.13 -0.2 3,037,796 + CA264_13040 0.22 -0.7 3,037,932 - CA264_13040 0.27 +0.5 3,037,932 - CA264_13040 0.27 -0.4 3,037,967 + CA264_13040 0.28 -0.2 3,037,968 - CA264_13040 0.28 +1.2
Or see this region's nucleotide sequence