Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_13015

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_13005 and CA264_13010 are separated by 123 nucleotidesCA264_13010 and CA264_13015 are separated by 87 nucleotidesCA264_13015 and CA264_13020 are separated by 51 nucleotidesCA264_13020 and CA264_13025 are separated by 153 nucleotides CA264_13005: CA264_13005 - hypothetical protein, at 3,030,950 to 3,031,996 _13005 CA264_13010: CA264_13010 - DNA-binding response regulator, at 3,032,120 to 3,032,857 _13010 CA264_13015: CA264_13015 - sensor histidine kinase, at 3,032,945 to 3,034,048 _13015 CA264_13020: CA264_13020 - hypothetical protein, at 3,034,100 to 3,034,342 _13020 CA264_13025: CA264_13025 - hypothetical protein, at 3,034,496 to 3,035,083 _13025 Position (kb) 3032 3033 3034 3035Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3032.008 kb on + strandat 3032.022 kb on + strandat 3032.040 kb on + strandat 3032.053 kb on - strandat 3032.098 kb on + strandat 3032.121 kb on + strandat 3032.170 kb on + strandat 3032.234 kb on + strand, within CA264_13010at 3032.322 kb on + strand, within CA264_13010at 3032.322 kb on + strand, within CA264_13010at 3032.323 kb on - strand, within CA264_13010at 3032.327 kb on + strand, within CA264_13010at 3032.327 kb on + strand, within CA264_13010at 3032.328 kb on - strand, within CA264_13010at 3032.361 kb on + strand, within CA264_13010at 3032.362 kb on - strand, within CA264_13010at 3032.362 kb on - strand, within CA264_13010at 3032.362 kb on - strand, within CA264_13010at 3032.437 kb on + strand, within CA264_13010at 3032.437 kb on + strand, within CA264_13010at 3032.437 kb on + strand, within CA264_13010at 3032.438 kb on - strand, within CA264_13010at 3032.438 kb on - strand, within CA264_13010at 3032.438 kb on - strand, within CA264_13010at 3032.450 kb on - strand, within CA264_13010at 3032.450 kb on - strand, within CA264_13010at 3032.568 kb on + strand, within CA264_13010at 3032.568 kb on + strand, within CA264_13010at 3032.604 kb on + strand, within CA264_13010at 3032.605 kb on - strand, within CA264_13010at 3032.842 kb on + strandat 3032.842 kb on + strandat 3032.842 kb on + strandat 3032.850 kb on - strandat 3032.937 kb on + strandat 3032.937 kb on + strandat 3032.951 kb on + strandat 3032.951 kb on + strandat 3032.952 kb on - strandat 3032.954 kb on + strandat 3033.254 kb on + strand, within CA264_13015at 3033.256 kb on + strand, within CA264_13015at 3033.321 kb on + strand, within CA264_13015at 3033.333 kb on + strand, within CA264_13015at 3033.378 kb on + strand, within CA264_13015at 3033.378 kb on + strand, within CA264_13015at 3033.378 kb on + strand, within CA264_13015at 3033.388 kb on - strand, within CA264_13015at 3033.457 kb on - strand, within CA264_13015at 3033.467 kb on - strand, within CA264_13015at 3033.615 kb on + strand, within CA264_13015at 3033.615 kb on + strand, within CA264_13015at 3033.616 kb on - strand, within CA264_13015at 3033.625 kb on + strand, within CA264_13015at 3033.625 kb on + strand, within CA264_13015at 3033.625 kb on + strand, within CA264_13015at 3033.626 kb on - strand, within CA264_13015at 3033.626 kb on - strand, within CA264_13015at 3033.648 kb on + strand, within CA264_13015at 3033.649 kb on - strand, within CA264_13015at 3033.781 kb on - strand, within CA264_13015at 3033.798 kb on + strand, within CA264_13015at 3033.813 kb on + strand, within CA264_13015at 3033.814 kb on - strand, within CA264_13015at 3033.816 kb on + strand, within CA264_13015at 3033.823 kb on + strand, within CA264_13015at 3033.824 kb on - strand, within CA264_13015at 3033.882 kb on + strand, within CA264_13015at 3033.895 kb on + strand, within CA264_13015at 3033.896 kb on - strand, within CA264_13015at 3033.897 kb on + strand, within CA264_13015at 3033.897 kb on + strand, within CA264_13015at 3033.898 kb on - strand, within CA264_13015at 3033.898 kb on - strand, within CA264_13015at 3033.930 kb on + strand, within CA264_13015at 3033.930 kb on + strand, within CA264_13015at 3033.930 kb on + strand, within CA264_13015at 3033.930 kb on + strand, within CA264_13015at 3033.931 kb on - strand, within CA264_13015at 3033.974 kb on + strandat 3033.975 kb on - strandat 3033.979 kb on + strandat 3034.041 kb on - strandat 3034.051 kb on + strandat 3034.051 kb on + strandat 3034.052 kb on - strandat 3034.059 kb on + strandat 3034.062 kb on - strandat 3034.085 kb on + strandat 3034.086 kb on - strandat 3034.141 kb on - strand, within CA264_13020at 3034.148 kb on + strand, within CA264_13020at 3034.262 kb on + strand, within CA264_13020at 3034.336 kb on + strandat 3034.336 kb on + strandat 3034.359 kb on + strandat 3034.359 kb on + strandat 3034.360 kb on - strandat 3034.364 kb on - strandat 3034.366 kb on - strandat 3034.408 kb on - strandat 3034.479 kb on + strandat 3034.480 kb on - strandat 3034.480 kb on - strandat 3034.480 kb on - strandat 3034.509 kb on + strandat 3034.744 kb on - strand, within CA264_13025at 3034.826 kb on + strand, within CA264_13025at 3034.827 kb on - strand, within CA264_13025at 3034.854 kb on + strand, within CA264_13025at 3034.959 kb on - strand, within CA264_13025at 3035.048 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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3,032,008 + -0.3
3,032,022 + +0.3
3,032,040 + +0.3
3,032,053 - -0.1
3,032,098 + +0.1
3,032,121 + +0.1
3,032,170 + +1.3
3,032,234 + CA264_13010 0.15 +0.3
3,032,322 + CA264_13010 0.27 +0.6
3,032,322 + CA264_13010 0.27 -0.1
3,032,323 - CA264_13010 0.28 +0.5
3,032,327 + CA264_13010 0.28 -0.1
3,032,327 + CA264_13010 0.28 -0.6
3,032,328 - CA264_13010 0.28 -0.9
3,032,361 + CA264_13010 0.33 -0.8
3,032,362 - CA264_13010 0.33 -0.7
3,032,362 - CA264_13010 0.33 -1.5
3,032,362 - CA264_13010 0.33 -0.6
3,032,437 + CA264_13010 0.43 -0.9
3,032,437 + CA264_13010 0.43 +0.7
3,032,437 + CA264_13010 0.43 -0.4
3,032,438 - CA264_13010 0.43 +1.3
3,032,438 - CA264_13010 0.43 -0.1
3,032,438 - CA264_13010 0.43 -0.1
3,032,450 - CA264_13010 0.45 +0.9
3,032,450 - CA264_13010 0.45 +0.9
3,032,568 + CA264_13010 0.61 +0.2
3,032,568 + CA264_13010 0.61 -0.2
3,032,604 + CA264_13010 0.66 +1.4
3,032,605 - CA264_13010 0.66 +0.4
3,032,842 + +0.8
3,032,842 + +0.5
3,032,842 + +1.4
3,032,850 - -0.3
3,032,937 + -0.2
3,032,937 + -0.5
3,032,951 + -1.5
3,032,951 + -1.9
3,032,952 - -0.4
3,032,954 + -1.3
3,033,254 + CA264_13015 0.28 -2.0
3,033,256 + CA264_13015 0.28 -2.8
3,033,321 + CA264_13015 0.34 -2.9
3,033,333 + CA264_13015 0.35 -2.9
3,033,378 + CA264_13015 0.39 -3.7
3,033,378 + CA264_13015 0.39 -4.8
3,033,378 + CA264_13015 0.39 -2.2
3,033,388 - CA264_13015 0.40 -2.6
3,033,457 - CA264_13015 0.46 -1.5
3,033,467 - CA264_13015 0.47 -2.1
3,033,615 + CA264_13015 0.61 -3.3
3,033,615 + CA264_13015 0.61 -1.9
3,033,616 - CA264_13015 0.61 -0.1
3,033,625 + CA264_13015 0.62 -0.1
3,033,625 + CA264_13015 0.62 -1.8
3,033,625 + CA264_13015 0.62 -1.8
3,033,626 - CA264_13015 0.62 +0.9
3,033,626 - CA264_13015 0.62 -2.4
3,033,648 + CA264_13015 0.64 -1.7
3,033,649 - CA264_13015 0.64 -0.7
3,033,781 - CA264_13015 0.76 -1.9
3,033,798 + CA264_13015 0.77 -2.2
3,033,813 + CA264_13015 0.79 -2.1
3,033,814 - CA264_13015 0.79 -0.1
3,033,816 + CA264_13015 0.79 -3.5
3,033,823 + CA264_13015 0.80 -0.1
3,033,824 - CA264_13015 0.80 -2.3
3,033,882 + CA264_13015 0.85 -0.9
3,033,895 + CA264_13015 0.86 -2.2
3,033,896 - CA264_13015 0.86 -2.0
3,033,897 + CA264_13015 0.86 -1.7
3,033,897 + CA264_13015 0.86 -0.4
3,033,898 - CA264_13015 0.86 -2.1
3,033,898 - CA264_13015 0.86 -2.4
3,033,930 + CA264_13015 0.89 -0.2
3,033,930 + CA264_13015 0.89 -1.8
3,033,930 + CA264_13015 0.89 -2.0
3,033,930 + CA264_13015 0.89 -1.1
3,033,931 - CA264_13015 0.89 -2.1
3,033,974 + -0.2
3,033,975 - -0.6
3,033,979 + +0.0
3,034,041 - -2.6
3,034,051 + -0.2
3,034,051 + -0.7
3,034,052 - -0.1
3,034,059 + +0.3
3,034,062 - +1.2
3,034,085 + +0.3
3,034,086 - -3.6
3,034,141 - CA264_13020 0.17 +0.9
3,034,148 + CA264_13020 0.20 +0.6
3,034,262 + CA264_13020 0.67 -0.3
3,034,336 + +0.2
3,034,336 + +1.0
3,034,359 + -1.7
3,034,359 + +1.0
3,034,360 - +1.1
3,034,364 - +0.6
3,034,366 - -0.1
3,034,408 - +0.1
3,034,479 + -0.2
3,034,480 - +1.1
3,034,480 - -0.0
3,034,480 - +0.2
3,034,509 + +0.9
3,034,744 - CA264_13025 0.42 +0.6
3,034,826 + CA264_13025 0.56 -0.1
3,034,827 - CA264_13025 0.56 +0.9
3,034,854 + CA264_13025 0.61 +0.1
3,034,959 - CA264_13025 0.79 -0.3
3,035,048 + -0.2

Or see this region's nucleotide sequence