Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_12125 and CA264_12130 are separated by 35 nucleotides CA264_12130 and CA264_12135 are separated by 4 nucleotides
CA264_12125: CA264_12125 - glycosyl transferase family 1, at 2,827,606 to 2,828,676
_12125
CA264_12130: CA264_12130 - oxidoreductase, at 2,828,712 to 2,829,758
_12130
CA264_12135: CA264_12135 - L-iditol 2-dehydrogenase, at 2,829,763 to 2,830,716
_12135
Position (kb)
2828
2829
2830 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2827.790 kb on + strand, within CA264_12125 at 2827.790 kb on + strand, within CA264_12125 at 2827.790 kb on + strand, within CA264_12125 at 2827.895 kb on + strand, within CA264_12125 at 2827.895 kb on + strand, within CA264_12125 at 2828.033 kb on + strand, within CA264_12125 at 2828.033 kb on + strand, within CA264_12125 at 2828.035 kb on + strand, within CA264_12125 at 2828.168 kb on + strand, within CA264_12125 at 2828.198 kb on + strand, within CA264_12125 at 2828.286 kb on - strand, within CA264_12125 at 2828.286 kb on - strand, within CA264_12125 at 2828.428 kb on + strand, within CA264_12125 at 2828.507 kb on + strand, within CA264_12125 at 2828.626 kb on + strand at 2828.707 kb on - strand at 2828.707 kb on - strand at 2828.745 kb on + strand at 2829.000 kb on + strand, within CA264_12130 at 2829.001 kb on - strand, within CA264_12130 at 2829.046 kb on + strand, within CA264_12130 at 2829.071 kb on + strand, within CA264_12130 at 2829.075 kb on - strand, within CA264_12130 at 2829.262 kb on + strand, within CA264_12130 at 2829.262 kb on + strand, within CA264_12130 at 2829.298 kb on + strand, within CA264_12130 at 2829.299 kb on - strand, within CA264_12130 at 2829.607 kb on + strand, within CA264_12130 at 2829.669 kb on + strand at 2829.772 kb on + strand at 2829.858 kb on - strand at 2829.910 kb on + strand, within CA264_12135 at 2829.919 kb on - strand, within CA264_12135 at 2829.919 kb on - strand, within CA264_12135 at 2830.300 kb on + strand, within CA264_12135 at 2830.455 kb on - strand, within CA264_12135
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 2,827,790 + CA264_12125 0.17 -1.6 2,827,790 + CA264_12125 0.17 -2.5 2,827,790 + CA264_12125 0.17 -1.5 2,827,895 + CA264_12125 0.27 -0.8 2,827,895 + CA264_12125 0.27 -1.3 2,828,033 + CA264_12125 0.40 -2.0 2,828,033 + CA264_12125 0.40 -2.2 2,828,035 + CA264_12125 0.40 -2.0 2,828,168 + CA264_12125 0.52 -1.1 2,828,198 + CA264_12125 0.55 -1.2 2,828,286 - CA264_12125 0.63 -1.2 2,828,286 - CA264_12125 0.63 -2.1 2,828,428 + CA264_12125 0.77 -1.2 2,828,507 + CA264_12125 0.84 -2.1 2,828,626 + -2.1 2,828,707 - -3.1 2,828,707 - -2.2 2,828,745 + +0.4 2,829,000 + CA264_12130 0.28 +0.9 2,829,001 - CA264_12130 0.28 -2.1 2,829,046 + CA264_12130 0.32 -1.1 2,829,071 + CA264_12130 0.34 -2.2 2,829,075 - CA264_12130 0.35 -0.3 2,829,262 + CA264_12130 0.53 -1.6 2,829,262 + CA264_12130 0.53 +0.9 2,829,298 + CA264_12130 0.56 -1.3 2,829,299 - CA264_12130 0.56 -2.3 2,829,607 + CA264_12130 0.85 -2.1 2,829,669 + -0.8 2,829,772 + -1.4 2,829,858 - -3.2 2,829,910 + CA264_12135 0.15 +0.1 2,829,919 - CA264_12135 0.16 -1.7 2,829,919 - CA264_12135 0.16 -2.8 2,830,300 + CA264_12135 0.56 -1.5 2,830,455 - CA264_12135 0.73 -2.9
Or see this region's nucleotide sequence