Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_11730

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_11720 and CA264_11725 are separated by 143 nucleotidesCA264_11725 and CA264_11730 overlap by 26 nucleotidesCA264_11730 and CA264_11735 are separated by 271 nucleotides CA264_11720: CA264_11720 - hypothetical protein, at 2,729,998 to 2,730,930 _11720 CA264_11725: CA264_11725 - hypothetical protein, at 2,731,074 to 2,731,466 _11725 CA264_11730: CA264_11730 - hypothetical protein, at 2,731,441 to 2,732,391 _11730 CA264_11735: CA264_11735 - hypothetical protein, at 2,732,663 to 2,733,385 _11735 Position (kb) 2731 2732 2733Strain fitness (log2 ratio) -2 -1 0 1 2at 2730.470 kb on + strand, within CA264_11720at 2730.539 kb on + strand, within CA264_11720at 2730.713 kb on + strand, within CA264_11720at 2730.844 kb on + strandat 2730.844 kb on + strandat 2730.944 kb on - strandat 2731.048 kb on - strandat 2731.061 kb on - strandat 2731.061 kb on - strandat 2731.062 kb on + strandat 2731.109 kb on + strandat 2731.421 kb on - strand, within CA264_11725at 2731.421 kb on - strand, within CA264_11725at 2731.433 kb on - strandat 2731.433 kb on - strandat 2731.459 kb on + strandat 2731.518 kb on - strandat 2731.540 kb on - strand, within CA264_11730at 2731.640 kb on + strand, within CA264_11730at 2731.659 kb on + strand, within CA264_11730at 2731.659 kb on + strand, within CA264_11730at 2731.694 kb on - strand, within CA264_11730at 2731.694 kb on - strand, within CA264_11730at 2731.695 kb on + strand, within CA264_11730at 2731.727 kb on - strand, within CA264_11730at 2731.778 kb on - strand, within CA264_11730at 2731.793 kb on - strand, within CA264_11730at 2731.873 kb on + strand, within CA264_11730at 2731.930 kb on - strand, within CA264_11730at 2731.935 kb on - strand, within CA264_11730at 2731.939 kb on + strand, within CA264_11730at 2731.940 kb on - strand, within CA264_11730at 2732.037 kb on + strand, within CA264_11730at 2732.132 kb on - strand, within CA264_11730at 2732.181 kb on + strand, within CA264_11730at 2732.187 kb on - strand, within CA264_11730at 2732.267 kb on + strand, within CA264_11730at 2732.329 kb on + strandat 2732.330 kb on - strandat 2732.330 kb on - strandat 2732.342 kb on - strandat 2732.503 kb on + strandat 2732.504 kb on - strandat 2732.528 kb on + strandat 2732.529 kb on - strandat 2732.529 kb on - strandat 2732.573 kb on + strandat 2732.574 kb on - strandat 2732.598 kb on + strandat 2732.628 kb on + strandat 2732.628 kb on + strandat 2732.628 kb on + strandat 2732.628 kb on + strandat 2732.628 kb on + strandat 2732.628 kb on + strandat 2732.628 kb on + strandat 2732.629 kb on - strandat 2732.629 kb on - strandat 2732.629 kb on - strandat 2732.664 kb on + strandat 2732.665 kb on - strandat 2732.719 kb on + strandat 2732.720 kb on - strandat 2732.771 kb on + strand, within CA264_11735at 2732.771 kb on + strand, within CA264_11735at 2732.772 kb on - strand, within CA264_11735at 2732.774 kb on + strand, within CA264_11735at 2732.775 kb on - strand, within CA264_11735at 2732.775 kb on - strand, within CA264_11735at 2732.800 kb on - strand, within CA264_11735at 2732.801 kb on + strand, within CA264_11735at 2732.802 kb on - strand, within CA264_11735at 2732.802 kb on - strand, within CA264_11735at 2732.849 kb on + strand, within CA264_11735at 2732.849 kb on + strand, within CA264_11735at 2732.850 kb on - strand, within CA264_11735at 2732.850 kb on - strand, within CA264_11735at 2732.854 kb on - strand, within CA264_11735at 2733.036 kb on + strand, within CA264_11735at 2733.037 kb on - strand, within CA264_11735at 2733.092 kb on - strand, within CA264_11735at 2733.136 kb on + strand, within CA264_11735at 2733.137 kb on - strand, within CA264_11735at 2733.137 kb on - strand, within CA264_11735at 2733.145 kb on + strand, within CA264_11735at 2733.145 kb on + strand, within CA264_11735at 2733.146 kb on - strand, within CA264_11735at 2733.154 kb on + strand, within CA264_11735at 2733.154 kb on + strand, within CA264_11735at 2733.154 kb on + strand, within CA264_11735at 2733.155 kb on - strand, within CA264_11735at 2733.277 kb on + strand, within CA264_11735at 2733.281 kb on - strand, within CA264_11735at 2733.281 kb on - strand, within CA264_11735at 2733.390 kb on + strandat 2733.390 kb on + strandat 2733.390 kb on + strandat 2733.390 kb on + strandat 2733.391 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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2,730,470 + CA264_11720 0.51 -1.2
2,730,539 + CA264_11720 0.58 +1.2
2,730,713 + CA264_11720 0.77 -1.6
2,730,844 + +0.3
2,730,844 + -0.0
2,730,944 - +0.9
2,731,048 - -0.7
2,731,061 - +1.9
2,731,061 - -0.7
2,731,062 + +0.9
2,731,109 + -0.6
2,731,421 - CA264_11725 0.88 +0.4
2,731,421 - CA264_11725 0.88 -0.2
2,731,433 - -0.4
2,731,433 - +0.4
2,731,459 + -1.7
2,731,518 - +1.4
2,731,540 - CA264_11730 0.10 -0.2
2,731,640 + CA264_11730 0.21 +0.1
2,731,659 + CA264_11730 0.23 +0.3
2,731,659 + CA264_11730 0.23 +0.3
2,731,694 - CA264_11730 0.27 -0.4
2,731,694 - CA264_11730 0.27 +1.3
2,731,695 + CA264_11730 0.27 -0.3
2,731,727 - CA264_11730 0.30 -1.4
2,731,778 - CA264_11730 0.35 -0.7
2,731,793 - CA264_11730 0.37 -1.7
2,731,873 + CA264_11730 0.45 -1.1
2,731,930 - CA264_11730 0.51 +0.2
2,731,935 - CA264_11730 0.52 -0.8
2,731,939 + CA264_11730 0.52 -0.9
2,731,940 - CA264_11730 0.52 -1.3
2,732,037 + CA264_11730 0.63 -0.7
2,732,132 - CA264_11730 0.73 -0.4
2,732,181 + CA264_11730 0.78 -1.7
2,732,187 - CA264_11730 0.78 +0.7
2,732,267 + CA264_11730 0.87 -1.7
2,732,329 + -0.4
2,732,330 - -0.7
2,732,330 - -1.7
2,732,342 - +0.0
2,732,503 + +0.5
2,732,504 - -1.4
2,732,528 + -0.1
2,732,529 - +0.2
2,732,529 - -2.7
2,732,573 + -0.7
2,732,574 - -0.4
2,732,598 + +0.3
2,732,628 + -0.2
2,732,628 + -0.4
2,732,628 + -0.1
2,732,628 + -0.5
2,732,628 + -1.5
2,732,628 + +1.4
2,732,628 + +0.5
2,732,629 - -0.4
2,732,629 - +0.3
2,732,629 - +2.1
2,732,664 + -1.4
2,732,665 - +0.8
2,732,719 + +0.0
2,732,720 - +1.5
2,732,771 + CA264_11735 0.15 +0.0
2,732,771 + CA264_11735 0.15 -0.5
2,732,772 - CA264_11735 0.15 +0.3
2,732,774 + CA264_11735 0.15 +0.2
2,732,775 - CA264_11735 0.15 -0.7
2,732,775 - CA264_11735 0.15 +0.8
2,732,800 - CA264_11735 0.19 +0.1
2,732,801 + CA264_11735 0.19 +0.0
2,732,802 - CA264_11735 0.19 +0.1
2,732,802 - CA264_11735 0.19 +0.1
2,732,849 + CA264_11735 0.26 +0.5
2,732,849 + CA264_11735 0.26 +0.1
2,732,850 - CA264_11735 0.26 -0.6
2,732,850 - CA264_11735 0.26 -0.3
2,732,854 - CA264_11735 0.26 +0.5
2,733,036 + CA264_11735 0.52 -0.5
2,733,037 - CA264_11735 0.52 +0.3
2,733,092 - CA264_11735 0.59 +0.3
2,733,136 + CA264_11735 0.65 -0.3
2,733,137 - CA264_11735 0.66 +0.1
2,733,137 - CA264_11735 0.66 -0.1
2,733,145 + CA264_11735 0.67 +0.1
2,733,145 + CA264_11735 0.67 +0.4
2,733,146 - CA264_11735 0.67 -0.1
2,733,154 + CA264_11735 0.68 +0.2
2,733,154 + CA264_11735 0.68 -0.2
2,733,154 + CA264_11735 0.68 -0.9
2,733,155 - CA264_11735 0.68 -0.6
2,733,277 + CA264_11735 0.85 -0.5
2,733,281 - CA264_11735 0.85 -0.8
2,733,281 - CA264_11735 0.85 +0.5
2,733,390 + -2.1
2,733,390 + -0.2
2,733,390 + +1.5
2,733,390 + -0.9
2,733,391 - +0.6

Or see this region's nucleotide sequence