Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_10480 and CA264_10485 are separated by 86 nucleotides CA264_10485 and CA264_10490 are separated by 286 nucleotides CA264_10490 and CA264_10495 overlap by 4 nucleotides
CA264_10480: CA264_10480 - AI-2E family transporter, at 2,430,230 to 2,431,405
_10480
CA264_10485: CA264_10485 - lipoprotein-releasing system ATP-binding protein LolD, at 2,431,492 to 2,432,145
_10485
CA264_10490: CA264_10490 - MobA-like protein, at 2,432,432 to 2,433,016
_10490
CA264_10495: CA264_10495 - alanine dehydrogenase, at 2,433,013 to 2,434,203
_10495
Position (kb)
2431
2432
2433 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2430.733 kb on + strand, within CA264_10480 at 2430.734 kb on - strand, within CA264_10480 at 2430.845 kb on + strand, within CA264_10480 at 2430.845 kb on + strand, within CA264_10480 at 2430.845 kb on + strand, within CA264_10480 at 2430.845 kb on + strand, within CA264_10480 at 2430.845 kb on + strand, within CA264_10480 at 2430.845 kb on + strand, within CA264_10480 at 2430.846 kb on - strand, within CA264_10480 at 2430.846 kb on - strand, within CA264_10480 at 2430.846 kb on - strand, within CA264_10480 at 2430.850 kb on + strand, within CA264_10480 at 2430.871 kb on - strand, within CA264_10480 at 2430.914 kb on - strand, within CA264_10480 at 2430.922 kb on + strand, within CA264_10480 at 2430.930 kb on + strand, within CA264_10480 at 2430.947 kb on + strand, within CA264_10480 at 2431.075 kb on - strand, within CA264_10480 at 2431.076 kb on + strand, within CA264_10480 at 2431.077 kb on - strand, within CA264_10480 at 2431.095 kb on + strand, within CA264_10480 at 2431.096 kb on - strand, within CA264_10480 at 2431.096 kb on - strand, within CA264_10480 at 2431.103 kb on + strand, within CA264_10480 at 2431.103 kb on + strand, within CA264_10480 at 2431.111 kb on + strand, within CA264_10480 at 2431.200 kb on + strand, within CA264_10480 at 2431.415 kb on + strand at 2431.415 kb on + strand at 2431.416 kb on - strand at 2431.421 kb on + strand at 2431.422 kb on - strand at 2431.469 kb on + strand at 2431.470 kb on - strand at 2431.470 kb on - strand at 2431.471 kb on + strand at 2431.472 kb on - strand at 2431.477 kb on - strand at 2432.144 kb on - strand at 2432.156 kb on - strand at 2432.164 kb on - strand at 2432.171 kb on + strand at 2432.171 kb on + strand at 2432.177 kb on + strand at 2432.177 kb on + strand at 2432.177 kb on + strand at 2432.178 kb on - strand at 2432.178 kb on - strand at 2432.202 kb on + strand at 2432.223 kb on - strand at 2432.223 kb on - strand at 2432.236 kb on + strand at 2432.236 kb on + strand at 2432.237 kb on - strand at 2432.251 kb on - strand at 2432.256 kb on + strand at 2432.256 kb on + strand at 2432.256 kb on + strand at 2432.256 kb on + strand at 2432.256 kb on + strand at 2432.257 kb on - strand at 2432.266 kb on + strand at 2432.267 kb on - strand at 2432.269 kb on - strand at 2432.269 kb on - strand at 2432.312 kb on - strand at 2432.314 kb on - strand at 2432.374 kb on - strand at 2432.377 kb on + strand at 2432.377 kb on + strand at 2432.377 kb on + strand at 2432.378 kb on - strand at 2432.378 kb on - strand at 2432.378 kb on - strand at 2432.378 kb on - strand at 2432.378 kb on - strand at 2432.379 kb on + strand at 2432.379 kb on + strand at 2432.379 kb on + strand at 2432.379 kb on + strand at 2432.379 kb on + strand at 2432.379 kb on + strand at 2432.379 kb on + strand at 2432.379 kb on + strand at 2432.379 kb on + strand at 2432.379 kb on + strand at 2432.379 kb on + strand at 2432.380 kb on - strand at 2432.380 kb on - strand at 2432.380 kb on - strand at 2432.380 kb on - strand at 2432.380 kb on - strand at 2432.429 kb on - strand at 2432.434 kb on - strand at 2432.458 kb on + strand at 2432.477 kb on + strand at 2432.477 kb on + strand at 2432.478 kb on - strand at 2432.594 kb on - strand, within CA264_10490 at 2432.695 kb on + strand, within CA264_10490 at 2432.698 kb on - strand, within CA264_10490 at 2432.757 kb on + strand, within CA264_10490 at 2432.822 kb on + strand, within CA264_10490 at 2432.841 kb on + strand, within CA264_10490 at 2432.842 kb on - strand, within CA264_10490 at 2432.916 kb on - strand, within CA264_10490 at 2432.951 kb on + strand, within CA264_10490 at 2432.951 kb on + strand, within CA264_10490 at 2432.952 kb on - strand, within CA264_10490 at 2433.016 kb on + strand at 2433.091 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 2,430,733 + CA264_10480 0.43 -0.7 2,430,734 - CA264_10480 0.43 -1.0 2,430,845 + CA264_10480 0.52 +0.0 2,430,845 + CA264_10480 0.52 -0.6 2,430,845 + CA264_10480 0.52 -1.4 2,430,845 + CA264_10480 0.52 -0.3 2,430,845 + CA264_10480 0.52 -0.3 2,430,845 + CA264_10480 0.52 -0.1 2,430,846 - CA264_10480 0.52 -0.4 2,430,846 - CA264_10480 0.52 -0.1 2,430,846 - CA264_10480 0.52 +2.5 2,430,850 + CA264_10480 0.53 +0.0 2,430,871 - CA264_10480 0.55 -0.8 2,430,914 - CA264_10480 0.58 -1.1 2,430,922 + CA264_10480 0.59 +0.4 2,430,930 + CA264_10480 0.60 +0.3 2,430,947 + CA264_10480 0.61 -0.2 2,431,075 - CA264_10480 0.72 -0.4 2,431,076 + CA264_10480 0.72 -0.1 2,431,077 - CA264_10480 0.72 -0.3 2,431,095 + CA264_10480 0.74 +0.9 2,431,096 - CA264_10480 0.74 -0.3 2,431,096 - CA264_10480 0.74 +0.2 2,431,103 + CA264_10480 0.74 -0.7 2,431,103 + CA264_10480 0.74 +0.9 2,431,111 + CA264_10480 0.75 -0.8 2,431,200 + CA264_10480 0.82 -0.5 2,431,415 + -1.0 2,431,415 + -2.3 2,431,416 - -2.1 2,431,421 + -0.4 2,431,422 - -1.1 2,431,469 + -1.2 2,431,470 - -0.7 2,431,470 - +0.9 2,431,471 + -1.2 2,431,472 - +0.2 2,431,477 - +0.9 2,432,144 - -0.1 2,432,156 - -1.7 2,432,164 - -0.1 2,432,171 + -0.8 2,432,171 + +1.8 2,432,177 + +0.9 2,432,177 + +1.4 2,432,177 + -1.8 2,432,178 - -0.7 2,432,178 - -0.7 2,432,202 + -0.7 2,432,223 - +0.5 2,432,223 - +0.3 2,432,236 + -0.6 2,432,236 + -0.7 2,432,237 - -1.5 2,432,251 - -1.6 2,432,256 + -1.5 2,432,256 + -1.4 2,432,256 + -1.7 2,432,256 + +0.5 2,432,256 + -0.3 2,432,257 - -2.0 2,432,266 + +1.5 2,432,267 - -0.6 2,432,269 - -0.8 2,432,269 - -0.4 2,432,312 - -0.4 2,432,314 - -1.0 2,432,374 - -0.3 2,432,377 + +0.1 2,432,377 + -2.1 2,432,377 + +1.1 2,432,378 - -1.3 2,432,378 - -1.0 2,432,378 - +0.0 2,432,378 - +0.1 2,432,378 - -0.1 2,432,379 + -0.1 2,432,379 + +1.5 2,432,379 + -0.7 2,432,379 + -0.7 2,432,379 + +1.2 2,432,379 + +0.0 2,432,379 + -0.1 2,432,379 + -0.7 2,432,379 + +0.1 2,432,379 + +0.1 2,432,379 + +1.2 2,432,380 - -0.7 2,432,380 - -3.1 2,432,380 - +1.3 2,432,380 - -0.9 2,432,380 - -0.6 2,432,429 - -0.7 2,432,434 - -1.4 2,432,458 + -0.5 2,432,477 + +0.8 2,432,477 + -1.1 2,432,478 - +0.9 2,432,594 - CA264_10490 0.28 +0.9 2,432,695 + CA264_10490 0.45 +0.4 2,432,698 - CA264_10490 0.45 +0.5 2,432,757 + CA264_10490 0.56 -0.1 2,432,822 + CA264_10490 0.67 -0.1 2,432,841 + CA264_10490 0.70 +0.4 2,432,842 - CA264_10490 0.70 +0.7 2,432,916 - CA264_10490 0.83 +1.5 2,432,951 + CA264_10490 0.89 -1.9 2,432,951 + CA264_10490 0.89 -0.2 2,432,952 - CA264_10490 0.89 +1.0 2,433,016 + -3.0 2,433,091 + +1.0
Or see this region's nucleotide sequence