Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_09725

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_09725 and CA264_09730 are separated by 62 nucleotidesCA264_09730 and CA264_09735 are separated by 16 nucleotides CA264_09725: CA264_09725 - cAMP-binding protein, at 2,259,415 to 2,259,984 _09725 CA264_09730: CA264_09730 - hypothetical protein, at 2,260,047 to 2,260,592 _09730 CA264_09735: CA264_09735 - 5-hydroxyisourate hydrolase, at 2,260,609 to 2,261,016 _09735 Position (kb) 2259 2260Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2258.446 kb on - strandat 2258.465 kb on + strandat 2258.466 kb on - strandat 2258.472 kb on - strandat 2258.472 kb on - strandat 2258.509 kb on - strandat 2258.522 kb on + strandat 2258.522 kb on + strandat 2258.522 kb on + strandat 2258.522 kb on + strandat 2258.523 kb on - strandat 2258.531 kb on + strandat 2258.532 kb on - strandat 2258.539 kb on + strandat 2258.540 kb on - strandat 2258.544 kb on - strandat 2258.544 kb on - strandat 2258.553 kb on + strandat 2258.565 kb on + strandat 2258.575 kb on + strandat 2258.581 kb on + strandat 2258.582 kb on - strandat 2258.675 kb on - strandat 2258.677 kb on + strandat 2258.677 kb on + strandat 2258.709 kb on - strandat 2258.723 kb on + strandat 2258.723 kb on + strandat 2258.723 kb on + strandat 2258.723 kb on + strandat 2258.763 kb on + strandat 2258.768 kb on + strandat 2258.771 kb on + strandat 2258.791 kb on - strandat 2258.795 kb on + strandat 2258.909 kb on + strandat 2258.976 kb on - strandat 2259.002 kb on - strandat 2259.002 kb on - strandat 2259.074 kb on + strandat 2259.107 kb on - strandat 2259.169 kb on - strandat 2259.175 kb on + strandat 2259.175 kb on + strandat 2259.176 kb on - strandat 2259.176 kb on - strandat 2259.177 kb on + strandat 2259.177 kb on + strandat 2259.178 kb on - strandat 2259.178 kb on - strandat 2259.178 kb on - strandat 2259.178 kb on - strandat 2259.180 kb on + strandat 2259.180 kb on + strandat 2259.180 kb on + strandat 2259.181 kb on - strandat 2259.187 kb on - strandat 2259.199 kb on - strandat 2259.241 kb on + strandat 2259.241 kb on + strandat 2259.265 kb on + strandat 2259.266 kb on - strandat 2259.458 kb on + strandat 2259.473 kb on + strand, within CA264_09725at 2259.473 kb on + strand, within CA264_09725at 2259.483 kb on - strand, within CA264_09725at 2259.483 kb on - strand, within CA264_09725at 2259.556 kb on + strand, within CA264_09725at 2259.557 kb on - strand, within CA264_09725at 2259.559 kb on + strand, within CA264_09725at 2259.695 kb on - strand, within CA264_09725at 2259.767 kb on + strand, within CA264_09725at 2259.785 kb on + strand, within CA264_09725at 2259.786 kb on - strand, within CA264_09725at 2259.955 kb on - strandat 2259.955 kb on - strandat 2259.959 kb on + strandat 2259.959 kb on + strandat 2259.996 kb on + strandat 2260.027 kb on - strandat 2260.027 kb on - strandat 2260.083 kb on - strandat 2260.174 kb on + strand, within CA264_09730at 2260.205 kb on - strand, within CA264_09730at 2260.211 kb on - strand, within CA264_09730at 2260.217 kb on + strand, within CA264_09730at 2260.292 kb on + strand, within CA264_09730at 2260.354 kb on - strand, within CA264_09730at 2260.354 kb on - strand, within CA264_09730at 2260.354 kb on - strand, within CA264_09730at 2260.580 kb on - strandat 2260.580 kb on - strandat 2260.580 kb on - strandat 2260.584 kb on - strandat 2260.584 kb on - strandat 2260.584 kb on - strandat 2260.584 kb on - strandat 2260.584 kb on - strandat 2260.626 kb on - strandat 2260.626 kb on - strandat 2260.945 kb on - strand, within CA264_09735at 2260.961 kb on - strand, within CA264_09735

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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2,258,446 - -0.1
2,258,465 + +0.1
2,258,466 - -0.2
2,258,472 - +1.3
2,258,472 - -2.1
2,258,509 - +0.6
2,258,522 + +0.9
2,258,522 + +0.4
2,258,522 + -0.4
2,258,522 + +1.2
2,258,523 - +0.2
2,258,531 + -1.4
2,258,532 - -2.3
2,258,539 + +0.2
2,258,540 - +1.4
2,258,544 - -0.7
2,258,544 - +0.2
2,258,553 + -0.1
2,258,565 + -0.3
2,258,575 + -0.7
2,258,581 + +1.8
2,258,582 - -0.7
2,258,675 - -0.1
2,258,677 + +1.2
2,258,677 + +1.5
2,258,709 - +0.9
2,258,723 + +0.6
2,258,723 + -0.7
2,258,723 + +0.3
2,258,723 + -1.7
2,258,763 + -1.7
2,258,768 + +1.9
2,258,771 + -0.3
2,258,791 - -0.6
2,258,795 + +0.2
2,258,909 + -0.4
2,258,976 - -0.1
2,259,002 - -0.2
2,259,002 - -0.1
2,259,074 + -0.7
2,259,107 - +1.9
2,259,169 - +0.5
2,259,175 + +0.2
2,259,175 + +0.9
2,259,176 - +0.1
2,259,176 - -0.1
2,259,177 + -0.4
2,259,177 + +3.5
2,259,178 - -0.8
2,259,178 - +0.7
2,259,178 - +0.3
2,259,178 - -0.5
2,259,180 + -0.4
2,259,180 + +0.5
2,259,180 + +0.3
2,259,181 - +0.2
2,259,187 - +0.3
2,259,199 - +0.5
2,259,241 + +0.5
2,259,241 + -0.9
2,259,265 + +0.9
2,259,266 - +0.9
2,259,458 + +1.8
2,259,473 + CA264_09725 0.10 +0.8
2,259,473 + CA264_09725 0.10 +0.4
2,259,483 - CA264_09725 0.12 +0.8
2,259,483 - CA264_09725 0.12 +0.8
2,259,556 + CA264_09725 0.25 -0.6
2,259,557 - CA264_09725 0.25 +0.9
2,259,559 + CA264_09725 0.25 +0.2
2,259,695 - CA264_09725 0.49 +0.1
2,259,767 + CA264_09725 0.62 +0.1
2,259,785 + CA264_09725 0.65 +0.1
2,259,786 - CA264_09725 0.65 +0.9
2,259,955 - +1.9
2,259,955 - -0.0
2,259,959 + +0.1
2,259,959 + +0.3
2,259,996 + -0.8
2,260,027 - +0.1
2,260,027 - +0.5
2,260,083 - -0.6
2,260,174 + CA264_09730 0.23 +0.9
2,260,205 - CA264_09730 0.29 -0.2
2,260,211 - CA264_09730 0.30 +0.1
2,260,217 + CA264_09730 0.31 -0.8
2,260,292 + CA264_09730 0.45 +0.7
2,260,354 - CA264_09730 0.56 +0.5
2,260,354 - CA264_09730 0.56 -0.5
2,260,354 - CA264_09730 0.56 -0.7
2,260,580 - -1.1
2,260,580 - +0.7
2,260,580 - +0.2
2,260,584 - -0.2
2,260,584 - -0.1
2,260,584 - -0.7
2,260,584 - +1.5
2,260,584 - +0.8
2,260,626 - +0.1
2,260,626 - -0.3
2,260,945 - CA264_09735 0.82 -0.3
2,260,961 - CA264_09735 0.86 -0.8

Or see this region's nucleotide sequence