Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_09045 and CA264_09050 are separated by 22 nucleotides CA264_09050 and CA264_09055 are separated by 751 nucleotides
CA264_09045: CA264_09045 - SusC/RagA family protein, at 2,114,955 to 2,118,245
_09045
CA264_09050: CA264_09050 - hypothetical protein, at 2,118,268 to 2,119,308
_09050
CA264_09055: CA264_09055 - PAS domain-containing sensor histidine kinase, at 2,120,060 to 2,122,249
_09055
Position (kb)
2118
2119
2120 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2117.466 kb on - strand, within CA264_09045 at 2117.674 kb on + strand, within CA264_09045 at 2117.678 kb on + strand, within CA264_09045 at 2117.715 kb on - strand, within CA264_09045 at 2117.788 kb on - strand, within CA264_09045 at 2117.905 kb on + strand, within CA264_09045 at 2117.905 kb on + strand, within CA264_09045 at 2117.905 kb on + strand, within CA264_09045 at 2117.905 kb on + strand, within CA264_09045 at 2117.906 kb on - strand, within CA264_09045 at 2117.916 kb on + strand, within CA264_09045 at 2117.924 kb on + strand at 2117.925 kb on - strand at 2117.925 kb on - strand at 2118.055 kb on + strand at 2118.056 kb on - strand at 2118.056 kb on - strand at 2118.114 kb on + strand at 2118.117 kb on + strand at 2118.155 kb on - strand at 2118.155 kb on - strand at 2118.258 kb on - strand at 2118.374 kb on + strand, within CA264_09050 at 2118.382 kb on - strand, within CA264_09050 at 2118.432 kb on - strand, within CA264_09050 at 2118.643 kb on + strand, within CA264_09050 at 2118.669 kb on + strand, within CA264_09050 at 2118.700 kb on + strand, within CA264_09050 at 2118.750 kb on + strand, within CA264_09050 at 2118.913 kb on + strand, within CA264_09050 at 2119.064 kb on + strand, within CA264_09050 at 2119.064 kb on + strand, within CA264_09050 at 2119.064 kb on - strand, within CA264_09050 at 2119.172 kb on - strand, within CA264_09050 at 2119.206 kb on - strand at 2119.296 kb on - strand at 2119.327 kb on - strand at 2119.340 kb on + strand at 2119.361 kb on + strand at 2119.363 kb on + strand at 2119.364 kb on - strand at 2119.485 kb on + strand at 2119.506 kb on - strand at 2119.571 kb on - strand at 2119.571 kb on - strand at 2119.592 kb on + strand at 2119.619 kb on + strand at 2119.622 kb on - strand at 2119.722 kb on - strand at 2119.838 kb on - strand at 2119.846 kb on - strand at 2119.846 kb on - strand at 2119.853 kb on + strand at 2119.854 kb on - strand at 2119.898 kb on + strand at 2119.920 kb on - strand at 2119.926 kb on - strand at 2119.931 kb on - strand at 2119.936 kb on + strand at 2119.937 kb on - strand at 2119.944 kb on - strand at 2119.944 kb on - strand at 2119.949 kb on - strand at 2119.955 kb on + strand at 2119.955 kb on + strand at 2119.967 kb on + strand at 2119.992 kb on - strand at 2120.019 kb on - strand at 2120.019 kb on - strand at 2120.021 kb on + strand at 2120.023 kb on + strand at 2120.023 kb on + strand at 2120.023 kb on + strand at 2120.023 kb on + strand at 2120.024 kb on - strand at 2120.024 kb on - strand at 2120.024 kb on - strand at 2120.053 kb on + strand at 2120.053 kb on + strand at 2120.054 kb on - strand at 2120.055 kb on + strand at 2120.055 kb on + strand at 2120.055 kb on + strand at 2120.055 kb on + strand at 2120.055 kb on + strand at 2120.055 kb on + strand at 2120.059 kb on + strand at 2120.059 kb on + strand at 2120.060 kb on - strand at 2120.060 kb on - strand at 2120.077 kb on - strand at 2120.224 kb on + strand at 2120.224 kb on + strand at 2120.224 kb on + strand at 2120.226 kb on + strand at 2120.226 kb on + strand at 2120.251 kb on - strand at 2120.251 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 2,117,466 - CA264_09045 0.76 +1.9 2,117,674 + CA264_09045 0.83 -0.6 2,117,678 + CA264_09045 0.83 +1.2 2,117,715 - CA264_09045 0.84 -0.3 2,117,788 - CA264_09045 0.86 +0.2 2,117,905 + CA264_09045 0.90 -0.5 2,117,905 + CA264_09045 0.90 +0.5 2,117,905 + CA264_09045 0.90 -0.1 2,117,905 + CA264_09045 0.90 +0.5 2,117,906 - CA264_09045 0.90 -0.1 2,117,916 + CA264_09045 0.90 -0.5 2,117,924 + -0.1 2,117,925 - +1.9 2,117,925 - +0.2 2,118,055 + -0.3 2,118,056 - -2.0 2,118,056 - -0.2 2,118,114 + +0.1 2,118,117 + +0.0 2,118,155 - +1.5 2,118,155 - +0.3 2,118,258 - +0.9 2,118,374 + CA264_09050 0.10 +1.6 2,118,382 - CA264_09050 0.11 +1.3 2,118,432 - CA264_09050 0.16 +1.3 2,118,643 + CA264_09050 0.36 +1.0 2,118,669 + CA264_09050 0.39 +0.9 2,118,700 + CA264_09050 0.41 +0.8 2,118,750 + CA264_09050 0.46 +1.1 2,118,913 + CA264_09050 0.62 +1.6 2,119,064 + CA264_09050 0.76 -0.1 2,119,064 + CA264_09050 0.76 +1.0 2,119,064 - CA264_09050 0.76 +0.2 2,119,172 - CA264_09050 0.87 +1.4 2,119,206 - +1.2 2,119,296 - -0.7 2,119,327 - +0.9 2,119,340 + +0.7 2,119,361 + +1.5 2,119,363 + +0.6 2,119,364 - +0.6 2,119,485 + +1.0 2,119,506 - +0.8 2,119,571 - +0.9 2,119,571 - +0.5 2,119,592 + +0.6 2,119,619 + +0.8 2,119,622 - +0.5 2,119,722 - -1.4 2,119,838 - +0.6 2,119,846 - +1.6 2,119,846 - +0.6 2,119,853 + +0.7 2,119,854 - +0.3 2,119,898 + +1.1 2,119,920 - +0.3 2,119,926 - +1.6 2,119,931 - +1.9 2,119,936 + -0.1 2,119,937 - +1.5 2,119,944 - +1.2 2,119,944 - +1.7 2,119,949 - +1.9 2,119,955 + +0.2 2,119,955 + -0.2 2,119,967 + -0.9 2,119,992 - +0.6 2,120,019 - -0.7 2,120,019 - +1.9 2,120,021 + +0.3 2,120,023 + +0.9 2,120,023 + +0.4 2,120,023 + -0.2 2,120,023 + +0.3 2,120,024 - +1.6 2,120,024 - +0.2 2,120,024 - -0.2 2,120,053 + +0.9 2,120,053 + -0.1 2,120,054 - +0.3 2,120,055 + +0.9 2,120,055 + -1.3 2,120,055 + +0.4 2,120,055 + -0.7 2,120,055 + +0.9 2,120,055 + +0.9 2,120,059 + +0.1 2,120,059 + +0.9 2,120,060 - +0.7 2,120,060 - +1.5 2,120,077 - +0.5 2,120,224 + +0.1 2,120,224 + +1.5 2,120,224 + +0.9 2,120,226 + -0.3 2,120,226 + -0.2 2,120,251 - -0.2 2,120,251 - +0.6
Or see this region's nucleotide sequence