Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_07565

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_07560 and CA264_07565 are separated by 175 nucleotidesCA264_07565 and CA264_07570 are separated by 82 nucleotidesCA264_07570 and CA264_07575 are separated by 168 nucleotides CA264_07560: CA264_07560 - DNA helicase RecQ, at 1,752,796 to 1,754,928 _07560 CA264_07565: CA264_07565 - four-helix bundle copper-binding protein, at 1,755,104 to 1,755,439 _07565 CA264_07570: CA264_07570 - hypothetical protein, at 1,755,522 to 1,755,854 _07570 CA264_07575: CA264_07575 - agmatinase, at 1,756,023 to 1,757,093 _07575 Position (kb) 1755 1756Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1754.150 kb on + strand, within CA264_07560at 1754.150 kb on + strand, within CA264_07560at 1754.153 kb on + strand, within CA264_07560at 1754.153 kb on + strand, within CA264_07560at 1754.184 kb on + strand, within CA264_07560at 1754.185 kb on - strand, within CA264_07560at 1754.222 kb on + strand, within CA264_07560at 1754.222 kb on + strand, within CA264_07560at 1754.357 kb on + strand, within CA264_07560at 1754.358 kb on - strand, within CA264_07560at 1754.392 kb on - strand, within CA264_07560at 1754.496 kb on + strand, within CA264_07560at 1754.496 kb on + strand, within CA264_07560at 1754.496 kb on + strand, within CA264_07560at 1754.497 kb on - strand, within CA264_07560at 1754.497 kb on - strand, within CA264_07560at 1754.497 kb on - strand, within CA264_07560at 1754.497 kb on - strand, within CA264_07560at 1754.497 kb on - strand, within CA264_07560at 1754.589 kb on - strand, within CA264_07560at 1754.589 kb on - strand, within CA264_07560at 1754.666 kb on + strand, within CA264_07560at 1754.749 kb on - strandat 1754.778 kb on - strandat 1754.812 kb on + strandat 1754.891 kb on - strandat 1754.928 kb on + strandat 1754.928 kb on + strandat 1754.933 kb on - strandat 1754.933 kb on - strandat 1754.961 kb on + strandat 1754.962 kb on - strandat 1754.962 kb on - strandat 1754.996 kb on + strandat 1755.017 kb on + strandat 1755.018 kb on - strandat 1755.018 kb on - strandat 1755.048 kb on + strandat 1755.048 kb on + strandat 1755.048 kb on + strandat 1755.049 kb on - strandat 1755.049 kb on - strandat 1755.049 kb on - strandat 1755.049 kb on - strandat 1755.067 kb on - strandat 1755.082 kb on + strandat 1755.098 kb on - strandat 1755.223 kb on + strand, within CA264_07565at 1755.249 kb on + strand, within CA264_07565at 1755.357 kb on - strand, within CA264_07565at 1755.357 kb on - strand, within CA264_07565at 1755.443 kb on - strandat 1755.450 kb on - strandat 1755.451 kb on + strandat 1755.452 kb on - strandat 1755.458 kb on - strandat 1755.476 kb on + strandat 1755.537 kb on + strandat 1755.537 kb on + strandat 1755.750 kb on + strand, within CA264_07570at 1755.750 kb on + strand, within CA264_07570at 1755.750 kb on + strand, within CA264_07570at 1755.779 kb on + strand, within CA264_07570at 1755.779 kb on + strand, within CA264_07570at 1755.780 kb on - strand, within CA264_07570at 1755.799 kb on + strand, within CA264_07570at 1755.799 kb on + strand, within CA264_07570at 1755.845 kb on + strandat 1755.846 kb on - strandat 1755.873 kb on - strandat 1755.875 kb on - strandat 1755.876 kb on + strandat 1755.876 kb on + strandat 1755.940 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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1,754,150 + CA264_07560 0.63 +1.4
1,754,150 + CA264_07560 0.63 -1.0
1,754,153 + CA264_07560 0.64 -0.5
1,754,153 + CA264_07560 0.64 -0.1
1,754,184 + CA264_07560 0.65 +2.8
1,754,185 - CA264_07560 0.65 -0.6
1,754,222 + CA264_07560 0.67 -0.9
1,754,222 + CA264_07560 0.67 +0.1
1,754,357 + CA264_07560 0.73 -0.2
1,754,358 - CA264_07560 0.73 -0.4
1,754,392 - CA264_07560 0.75 -1.7
1,754,496 + CA264_07560 0.80 +0.3
1,754,496 + CA264_07560 0.80 -2.5
1,754,496 + CA264_07560 0.80 +0.8
1,754,497 - CA264_07560 0.80 +0.0
1,754,497 - CA264_07560 0.80 +0.4
1,754,497 - CA264_07560 0.80 -0.2
1,754,497 - CA264_07560 0.80 +0.8
1,754,497 - CA264_07560 0.80 -0.2
1,754,589 - CA264_07560 0.84 -0.6
1,754,589 - CA264_07560 0.84 -0.7
1,754,666 + CA264_07560 0.88 -2.2
1,754,749 - -0.9
1,754,778 - +0.0
1,754,812 + +2.2
1,754,891 - -0.9
1,754,928 + -0.2
1,754,928 + -0.1
1,754,933 - -0.2
1,754,933 - -0.1
1,754,961 + -0.2
1,754,962 - -0.3
1,754,962 - +1.2
1,754,996 + +0.8
1,755,017 + +0.7
1,755,018 - +0.2
1,755,018 - -0.0
1,755,048 + +0.1
1,755,048 + -1.0
1,755,048 + -0.1
1,755,049 - -0.3
1,755,049 - +0.9
1,755,049 - -0.3
1,755,049 - +0.1
1,755,067 - -2.2
1,755,082 + +0.5
1,755,098 - +0.1
1,755,223 + CA264_07565 0.35 -1.7
1,755,249 + CA264_07565 0.43 +0.8
1,755,357 - CA264_07565 0.75 -0.1
1,755,357 - CA264_07565 0.75 +1.0
1,755,443 - -1.7
1,755,450 - +0.8
1,755,451 + +0.2
1,755,452 - +0.8
1,755,458 - +0.3
1,755,476 + -1.0
1,755,537 + +0.2
1,755,537 + +0.2
1,755,750 + CA264_07570 0.68 -1.3
1,755,750 + CA264_07570 0.68 -0.2
1,755,750 + CA264_07570 0.68 -0.4
1,755,779 + CA264_07570 0.77 +0.3
1,755,779 + CA264_07570 0.77 +0.1
1,755,780 - CA264_07570 0.77 -0.2
1,755,799 + CA264_07570 0.83 -0.2
1,755,799 + CA264_07570 0.83 -0.6
1,755,845 + -0.2
1,755,846 - +0.3
1,755,873 - -0.7
1,755,875 - -0.4
1,755,876 + -0.9
1,755,876 + +0.4
1,755,940 - +0.8

Or see this region's nucleotide sequence