Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_06610

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_06605 and CA264_06610 are separated by 194 nucleotidesCA264_06610 and CA264_06615 are separated by 43 nucleotides CA264_06605: CA264_06605 - ketoacyl-ACP synthase III, at 1,521,759 to 1,522,757 _06605 CA264_06610: CA264_06610 - iron-dependent repressor, at 1,522,952 to 1,523,611 _06610 CA264_06615: CA264_06615 - iron/manganese transporter, at 1,523,655 to 1,525,538 _06615 Position (kb) 1522 1523 1524Strain fitness (log2 ratio) -2 -1 0 1 2at 1522.018 kb on - strand, within CA264_06605at 1522.073 kb on - strand, within CA264_06605at 1522.092 kb on - strand, within CA264_06605at 1522.113 kb on + strand, within CA264_06605at 1522.113 kb on + strand, within CA264_06605at 1522.114 kb on - strand, within CA264_06605at 1522.142 kb on - strand, within CA264_06605at 1522.155 kb on + strand, within CA264_06605at 1522.156 kb on - strand, within CA264_06605at 1522.211 kb on + strand, within CA264_06605at 1522.211 kb on + strand, within CA264_06605at 1522.235 kb on + strand, within CA264_06605at 1522.304 kb on + strand, within CA264_06605at 1522.442 kb on + strand, within CA264_06605at 1522.502 kb on + strand, within CA264_06605at 1522.503 kb on - strand, within CA264_06605at 1522.560 kb on + strand, within CA264_06605at 1522.560 kb on + strand, within CA264_06605at 1522.560 kb on + strand, within CA264_06605at 1522.597 kb on + strand, within CA264_06605at 1522.598 kb on - strand, within CA264_06605at 1522.598 kb on - strand, within CA264_06605at 1522.613 kb on + strand, within CA264_06605at 1522.613 kb on + strand, within CA264_06605at 1522.613 kb on + strand, within CA264_06605at 1522.614 kb on - strand, within CA264_06605at 1522.617 kb on + strand, within CA264_06605at 1522.617 kb on + strand, within CA264_06605at 1522.618 kb on - strand, within CA264_06605at 1522.665 kb on + strandat 1522.744 kb on + strandat 1522.744 kb on + strandat 1522.745 kb on - strandat 1522.755 kb on + strandat 1522.756 kb on - strandat 1522.756 kb on - strandat 1522.773 kb on - strandat 1522.831 kb on + strandat 1522.853 kb on + strandat 1522.853 kb on + strandat 1522.854 kb on - strandat 1522.888 kb on + strandat 1522.899 kb on + strandat 1522.900 kb on - strandat 1522.941 kb on + strandat 1522.964 kb on + strandat 1522.983 kb on + strandat 1522.984 kb on - strandat 1522.994 kb on + strandat 1522.994 kb on + strandat 1523.117 kb on + strand, within CA264_06610at 1523.117 kb on + strand, within CA264_06610at 1523.117 kb on + strand, within CA264_06610at 1523.117 kb on + strand, within CA264_06610at 1523.122 kb on - strand, within CA264_06610at 1523.122 kb on - strand, within CA264_06610at 1523.126 kb on + strand, within CA264_06610at 1523.126 kb on + strand, within CA264_06610at 1523.129 kb on - strand, within CA264_06610at 1523.399 kb on - strand, within CA264_06610at 1523.501 kb on - strand, within CA264_06610at 1523.518 kb on - strand, within CA264_06610at 1523.597 kb on + strandat 1523.597 kb on + strandat 1523.597 kb on + strandat 1523.598 kb on - strandat 1523.598 kb on - strandat 1523.601 kb on + strandat 1523.601 kb on + strandat 1523.601 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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1,522,018 - CA264_06605 0.26 -1.8
1,522,073 - CA264_06605 0.31 -1.5
1,522,092 - CA264_06605 0.33 -0.7
1,522,113 + CA264_06605 0.35 -0.0
1,522,113 + CA264_06605 0.35 +0.3
1,522,114 - CA264_06605 0.36 -1.4
1,522,142 - CA264_06605 0.38 -1.5
1,522,155 + CA264_06605 0.40 -1.1
1,522,156 - CA264_06605 0.40 -1.5
1,522,211 + CA264_06605 0.45 +1.0
1,522,211 + CA264_06605 0.45 +0.6
1,522,235 + CA264_06605 0.48 +0.1
1,522,304 + CA264_06605 0.55 +1.5
1,522,442 + CA264_06605 0.68 +0.9
1,522,502 + CA264_06605 0.74 +0.5
1,522,503 - CA264_06605 0.74 -1.9
1,522,560 + CA264_06605 0.80 +0.6
1,522,560 + CA264_06605 0.80 +0.7
1,522,560 + CA264_06605 0.80 -0.5
1,522,597 + CA264_06605 0.84 +1.7
1,522,598 - CA264_06605 0.84 -0.1
1,522,598 - CA264_06605 0.84 -1.3
1,522,613 + CA264_06605 0.85 +1.2
1,522,613 + CA264_06605 0.85 +1.3
1,522,613 + CA264_06605 0.85 +0.2
1,522,614 - CA264_06605 0.86 -1.1
1,522,617 + CA264_06605 0.86 -0.0
1,522,617 + CA264_06605 0.86 +1.0
1,522,618 - CA264_06605 0.86 -2.5
1,522,665 + +0.6
1,522,744 + +0.9
1,522,744 + +0.1
1,522,745 - -0.2
1,522,755 + -0.7
1,522,756 - +1.3
1,522,756 - -0.9
1,522,773 - -1.2
1,522,831 + -0.4
1,522,853 + +0.9
1,522,853 + +1.1
1,522,854 - +0.3
1,522,888 + +0.7
1,522,899 + +1.0
1,522,900 - -1.0
1,522,941 + +1.3
1,522,964 + +0.1
1,522,983 + +0.9
1,522,984 - -0.4
1,522,994 + +1.8
1,522,994 + +2.0
1,523,117 + CA264_06610 0.25 +1.4
1,523,117 + CA264_06610 0.25 -1.9
1,523,117 + CA264_06610 0.25 -0.6
1,523,117 + CA264_06610 0.25 -0.1
1,523,122 - CA264_06610 0.26 -0.1
1,523,122 - CA264_06610 0.26 -0.1
1,523,126 + CA264_06610 0.26 -0.0
1,523,126 + CA264_06610 0.26 +0.4
1,523,129 - CA264_06610 0.27 -1.1
1,523,399 - CA264_06610 0.68 -0.8
1,523,501 - CA264_06610 0.83 -0.1
1,523,518 - CA264_06610 0.86 -0.1
1,523,597 + +0.6
1,523,597 + +0.9
1,523,597 + +1.4
1,523,598 - +0.7
1,523,598 - +0.5
1,523,601 + +0.4
1,523,601 + +0.9
1,523,601 + +1.1

Or see this region's nucleotide sequence