Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_03910

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_03900 and CA264_03905 are separated by 146 nucleotidesCA264_03905 and CA264_03910 overlap by 4 nucleotidesCA264_03910 and CA264_03915 are separated by 178 nucleotidesCA264_03915 and CA264_03920 are separated by 3 nucleotides CA264_03900: CA264_03900 - serine/threonine protein phosphatase, at 907,863 to 909,086 _03900 CA264_03905: CA264_03905 - polysaccharide deacetylase family protein, at 909,233 to 909,823 _03905 CA264_03910: CA264_03910 - family 2 glycosyl transferase, at 909,820 to 910,911 _03910 CA264_03915: CA264_03915 - hydrolase TatD, at 911,090 to 911,857 _03915 CA264_03920: CA264_03920 - L-asparaginase 1, at 911,861 to 912,928 _03920 Position (kb) 909 910 911Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 909.027 kb on + strandat 909.081 kb on - strandat 909.085 kb on - strandat 909.090 kb on + strandat 909.091 kb on - strandat 909.106 kb on - strandat 909.106 kb on - strandat 909.174 kb on + strandat 909.174 kb on + strandat 909.175 kb on - strandat 909.246 kb on - strandat 909.281 kb on + strandat 909.281 kb on + strandat 909.282 kb on - strandat 909.282 kb on - strandat 909.286 kb on + strandat 909.287 kb on - strandat 909.347 kb on + strand, within CA264_03905at 909.347 kb on + strand, within CA264_03905at 909.348 kb on - strand, within CA264_03905at 909.454 kb on + strand, within CA264_03905at 909.454 kb on + strand, within CA264_03905at 909.491 kb on + strand, within CA264_03905at 909.650 kb on + strand, within CA264_03905at 909.762 kb on - strand, within CA264_03905at 909.819 kb on + strandat 909.828 kb on - strandat 909.838 kb on + strandat 909.861 kb on - strandat 909.912 kb on + strandat 909.913 kb on - strandat 909.936 kb on + strand, within CA264_03910at 910.105 kb on + strand, within CA264_03910at 910.106 kb on - strand, within CA264_03910at 910.106 kb on - strand, within CA264_03910at 910.107 kb on + strand, within CA264_03910at 910.107 kb on + strand, within CA264_03910at 910.108 kb on - strand, within CA264_03910at 910.108 kb on - strand, within CA264_03910at 910.108 kb on - strand, within CA264_03910at 910.348 kb on + strand, within CA264_03910at 910.348 kb on + strand, within CA264_03910at 910.353 kb on - strand, within CA264_03910at 910.436 kb on - strand, within CA264_03910at 910.436 kb on - strand, within CA264_03910at 910.463 kb on + strand, within CA264_03910at 910.470 kb on + strand, within CA264_03910at 910.471 kb on - strand, within CA264_03910at 910.538 kb on - strand, within CA264_03910at 910.575 kb on + strand, within CA264_03910at 910.582 kb on - strand, within CA264_03910at 910.582 kb on - strand, within CA264_03910at 910.640 kb on - strand, within CA264_03910at 910.640 kb on - strand, within CA264_03910at 910.672 kb on + strand, within CA264_03910at 910.704 kb on + strand, within CA264_03910at 910.705 kb on - strand, within CA264_03910at 910.740 kb on + strand, within CA264_03910at 910.741 kb on - strandat 910.763 kb on - strand, within CA264_03910at 910.807 kb on + strandat 910.807 kb on + strandat 910.808 kb on - strandat 910.813 kb on + strandat 910.814 kb on - strandat 910.814 kb on - strandat 910.814 kb on - strandat 910.814 kb on - strandat 910.829 kb on + strandat 910.830 kb on - strandat 910.830 kb on - strandat 910.830 kb on - strandat 910.853 kb on + strandat 910.853 kb on + strandat 910.854 kb on - strandat 910.857 kb on + strandat 910.857 kb on + strandat 910.864 kb on + strandat 910.881 kb on + strandat 910.882 kb on - strandat 910.910 kb on - strandat 910.924 kb on + strandat 911.033 kb on - strandat 911.042 kb on + strandat 911.042 kb on + strandat 911.074 kb on - strandat 911.087 kb on + strandat 911.087 kb on + strandat 911.087 kb on + strandat 911.088 kb on - strandat 911.088 kb on - strandat 911.088 kb on - strandat 911.116 kb on + strandat 911.117 kb on - strandat 911.120 kb on + strandat 911.181 kb on + strand, within CA264_03915at 911.218 kb on + strand, within CA264_03915at 911.219 kb on - strand, within CA264_03915at 911.250 kb on - strand, within CA264_03915at 911.387 kb on + strand, within CA264_03915at 911.666 kb on + strand, within CA264_03915at 911.667 kb on - strand, within CA264_03915at 911.708 kb on + strand, within CA264_03915at 911.709 kb on - strand, within CA264_03915at 911.753 kb on + strand, within CA264_03915at 911.753 kb on + strand, within CA264_03915at 911.855 kb on + strandat 911.861 kb on - strandat 911.877 kb on + strandat 911.884 kb on - strandat 911.884 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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909,027 + +0.5
909,081 - +0.1
909,085 - +1.2
909,090 + +0.2
909,091 - -0.6
909,106 - -0.6
909,106 - -1.1
909,174 + -0.4
909,174 + +0.6
909,175 - +0.0
909,246 - +1.5
909,281 + -0.6
909,281 + -1.9
909,282 - -2.1
909,282 - -0.7
909,286 + -1.2
909,287 - +0.9
909,347 + CA264_03905 0.19 -2.4
909,347 + CA264_03905 0.19 -1.4
909,348 - CA264_03905 0.19 -3.8
909,454 + CA264_03905 0.37 -0.8
909,454 + CA264_03905 0.37 -1.1
909,491 + CA264_03905 0.44 -2.6
909,650 + CA264_03905 0.71 -3.4
909,762 - CA264_03905 0.90 -1.1
909,819 + -2.6
909,828 - -0.4
909,838 + -2.1
909,861 - -0.1
909,912 + -1.1
909,913 - -1.9
909,936 + CA264_03910 0.11 -1.9
910,105 + CA264_03910 0.26 +2.5
910,106 - CA264_03910 0.26 -1.4
910,106 - CA264_03910 0.26 -2.4
910,107 + CA264_03910 0.26 -3.3
910,107 + CA264_03910 0.26 -2.1
910,108 - CA264_03910 0.26 -2.6
910,108 - CA264_03910 0.26 -1.7
910,108 - CA264_03910 0.26 -3.2
910,348 + CA264_03910 0.48 -1.7
910,348 + CA264_03910 0.48 +0.4
910,353 - CA264_03910 0.49 -2.8
910,436 - CA264_03910 0.56 -1.6
910,436 - CA264_03910 0.56 -2.0
910,463 + CA264_03910 0.59 -3.0
910,470 + CA264_03910 0.60 -1.8
910,471 - CA264_03910 0.60 -1.9
910,538 - CA264_03910 0.66 +0.1
910,575 + CA264_03910 0.69 -0.6
910,582 - CA264_03910 0.70 -1.9
910,582 - CA264_03910 0.70 -1.7
910,640 - CA264_03910 0.75 -2.2
910,640 - CA264_03910 0.75 +0.2
910,672 + CA264_03910 0.78 -2.1
910,704 + CA264_03910 0.81 -1.4
910,705 - CA264_03910 0.81 -2.8
910,740 + CA264_03910 0.84 -0.1
910,741 - +0.9
910,763 - CA264_03910 0.86 -2.4
910,807 + -1.9
910,807 + -1.4
910,808 - -2.1
910,813 + -1.6
910,814 - +2.3
910,814 - -0.9
910,814 - -2.1
910,814 - -1.1
910,829 + -1.9
910,830 - -2.5
910,830 - -1.2
910,830 - -1.6
910,853 + -1.4
910,853 + +0.6
910,854 - -1.2
910,857 + -1.9
910,857 + -0.3
910,864 + -2.4
910,881 + -2.6
910,882 - -0.1
910,910 - -0.2
910,924 + -0.2
911,033 - -0.1
911,042 + -0.3
911,042 + -0.5
911,074 - -1.0
911,087 + +1.2
911,087 + -0.2
911,087 + +0.4
911,088 - -0.3
911,088 - +0.2
911,088 - -0.1
911,116 + +0.1
911,117 - +0.2
911,120 + -1.6
911,181 + CA264_03915 0.12 -0.2
911,218 + CA264_03915 0.17 +0.4
911,219 - CA264_03915 0.17 +0.3
911,250 - CA264_03915 0.21 +0.4
911,387 + CA264_03915 0.39 -1.1
911,666 + CA264_03915 0.75 +1.1
911,667 - CA264_03915 0.75 -0.7
911,708 + CA264_03915 0.80 +0.2
911,709 - CA264_03915 0.81 +0.9
911,753 + CA264_03915 0.86 -0.6
911,753 + CA264_03915 0.86 +0.5
911,855 + +0.5
911,861 - -1.9
911,877 + +0.5
911,884 - +0.4
911,884 - +0.1

Or see this region's nucleotide sequence