Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_03435 and CA264_03440 are separated by 246 nucleotides CA264_03440 and CA264_03445 are separated by 341 nucleotides CA264_03445 and CA264_03450 are separated by 49 nucleotides
CA264_03435: CA264_03435 - hypothetical protein, at 800,647 to 801,348
_03435
CA264_03440: CA264_03440 - DoxX family protein, at 801,595 to 801,993
_03440
CA264_03445: CA264_03445 - anhydro-N-acetylmuramic acid kinase, at 802,335 to 803,534
_03445
CA264_03450: CA264_03450 - SusC/RagA family TonB-linked outer membrane protein, at 803,584 to 806,595
_03450
Position (kb) 802
803
804 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 801.401 kb on + strand at 801.427 kb on + strand at 801.428 kb on - strand at 801.428 kb on - strand at 801.428 kb on - strand at 801.429 kb on + strand at 801.430 kb on - strand at 801.430 kb on - strand at 801.430 kb on - strand at 801.475 kb on - strand at 801.489 kb on + strand at 801.489 kb on + strand at 801.490 kb on - strand at 801.490 kb on - strand at 801.490 kb on - strand at 801.490 kb on - strand at 801.498 kb on - strand at 801.547 kb on + strand at 801.549 kb on + strand at 801.553 kb on + strand at 801.554 kb on - strand at 801.554 kb on - strand at 801.567 kb on + strand at 801.604 kb on + strand at 801.604 kb on + strand at 801.604 kb on + strand at 801.604 kb on + strand at 801.666 kb on + strand, within CA264_03440 at 801.667 kb on - strand, within CA264_03440 at 801.775 kb on - strand, within CA264_03440 at 801.907 kb on + strand, within CA264_03440 at 801.908 kb on - strand, within CA264_03440 at 801.925 kb on + strand, within CA264_03440 at 801.926 kb on - strand, within CA264_03440 at 801.926 kb on - strand, within CA264_03440 at 801.984 kb on + strand at 802.004 kb on + strand at 802.010 kb on + strand at 802.011 kb on - strand at 802.011 kb on - strand at 802.011 kb on - strand at 802.013 kb on + strand at 802.014 kb on - strand at 802.074 kb on - strand at 802.077 kb on + strand at 802.077 kb on + strand at 802.077 kb on + strand at 802.077 kb on + strand at 802.077 kb on + strand at 802.078 kb on - strand at 802.078 kb on - strand at 802.078 kb on - strand at 802.110 kb on + strand at 802.111 kb on - strand at 802.111 kb on - strand at 802.117 kb on - strand at 802.117 kb on - strand at 802.217 kb on - strand at 802.229 kb on + strand at 802.230 kb on - strand at 802.231 kb on + strand at 802.231 kb on + strand at 802.231 kb on + strand at 802.232 kb on - strand at 802.238 kb on + strand at 802.238 kb on + strand at 802.324 kb on + strand at 802.324 kb on + strand at 802.325 kb on - strand at 802.334 kb on + strand at 802.335 kb on - strand at 802.388 kb on + strand at 802.433 kb on - strand at 802.433 kb on - strand at 802.536 kb on - strand, within CA264_03445 at 802.587 kb on + strand, within CA264_03445 at 802.588 kb on - strand, within CA264_03445 at 802.588 kb on - strand, within CA264_03445 at 802.689 kb on + strand, within CA264_03445 at 802.690 kb on - strand, within CA264_03445 at 802.690 kb on - strand, within CA264_03445 at 802.690 kb on - strand at 802.712 kb on + strand, within CA264_03445 at 802.712 kb on + strand, within CA264_03445 at 802.713 kb on - strand, within CA264_03445 at 802.717 kb on + strand, within CA264_03445 at 802.717 kb on + strand, within CA264_03445 at 802.717 kb on + strand, within CA264_03445 at 802.742 kb on - strand, within CA264_03445 at 802.742 kb on - strand, within CA264_03445 at 802.747 kb on + strand, within CA264_03445 at 802.747 kb on + strand, within CA264_03445 at 802.748 kb on - strand, within CA264_03445 at 802.787 kb on - strand, within CA264_03445 at 802.787 kb on - strand, within CA264_03445 at 802.787 kb on - strand, within CA264_03445 at 802.861 kb on - strand, within CA264_03445 at 802.901 kb on + strand, within CA264_03445 at 802.901 kb on + strand, within CA264_03445 at 802.950 kb on - strand, within CA264_03445 at 802.993 kb on + strand, within CA264_03445 at 803.004 kb on + strand, within CA264_03445 at 803.005 kb on - strand, within CA264_03445 at 803.006 kb on + strand, within CA264_03445 at 803.053 kb on + strand, within CA264_03445 at 803.098 kb on + strand, within CA264_03445 at 803.099 kb on - strand, within CA264_03445 at 803.099 kb on - strand, within CA264_03445 at 803.099 kb on - strand, within CA264_03445 at 803.231 kb on - strand, within CA264_03445 at 803.398 kb on + strand, within CA264_03445 at 803.553 kb on - strand at 803.563 kb on + strand at 803.575 kb on + strand at 803.575 kb on + strand at 803.584 kb on - strand at 803.584 kb on - strand at 803.597 kb on - strand at 803.601 kb on + strand at 803.657 kb on + strand at 803.657 kb on + strand at 803.770 kb on - strand at 803.770 kb on - strand at 803.770 kb on - strand at 803.833 kb on + strand at 803.833 kb on + strand at 803.833 kb on + strand at 803.836 kb on - strand at 803.851 kb on + strand at 803.852 kb on - strand at 803.852 kb on - strand at 803.862 kb on + strand at 803.901 kb on + strand, within CA264_03450 at 803.902 kb on - strand, within CA264_03450 at 803.902 kb on - strand, within CA264_03450 at 803.945 kb on + strand, within CA264_03450 at 804.006 kb on + strand, within CA264_03450 at 804.006 kb on + strand, within CA264_03450 at 804.006 kb on + strand, within CA264_03450 at 804.007 kb on - strand, within CA264_03450 at 804.007 kb on - strand, within CA264_03450 at 804.007 kb on - strand, within CA264_03450 at 804.007 kb on - strand, within CA264_03450 at 804.081 kb on - strand, within CA264_03450 at 804.126 kb on + strand, within CA264_03450 at 804.127 kb on - strand, within CA264_03450 at 804.148 kb on - strand, within CA264_03450 at 804.153 kb on + strand, within CA264_03450 at 804.154 kb on - strand, within CA264_03450 at 804.154 kb on - strand, within CA264_03450 at 804.154 kb on - strand, within CA264_03450 at 804.154 kb on - strand, within CA264_03450 at 804.181 kb on + strand, within CA264_03450 at 804.182 kb on - strand, within CA264_03450 at 804.182 kb on - strand, within CA264_03450 at 804.182 kb on - strand, within CA264_03450 at 804.182 kb on - strand, within CA264_03450 at 804.241 kb on + strand, within CA264_03450 at 804.261 kb on - strand, within CA264_03450 at 804.261 kb on - strand, within CA264_03450 at 804.264 kb on + strand, within CA264_03450 at 804.265 kb on - strand, within CA264_03450 at 804.281 kb on + strand, within CA264_03450 at 804.281 kb on + strand, within CA264_03450 at 804.282 kb on - strand, within CA264_03450 at 804.282 kb on - strand, within CA264_03450 at 804.282 kb on - strand, within CA264_03450 at 804.289 kb on - strand, within CA264_03450 at 804.322 kb on - strand, within CA264_03450 at 804.325 kb on + strand, within CA264_03450 at 804.325 kb on + strand, within CA264_03450 at 804.325 kb on + strand, within CA264_03450 at 804.325 kb on + strand, within CA264_03450 at 804.325 kb on + strand, within CA264_03450 at 804.326 kb on - strand, within CA264_03450 at 804.385 kb on - strand, within CA264_03450 at 804.406 kb on - strand, within CA264_03450
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 801,401 + +1.2 801,427 + +1.2 801,428 - +0.9 801,428 - +0.5 801,428 - +0.2 801,429 + +0.9 801,430 - -0.2 801,430 - +0.6 801,430 - +0.3 801,475 - +0.2 801,489 + +1.4 801,489 + -0.1 801,490 - +0.2 801,490 - +0.1 801,490 - +1.3 801,490 - +0.9 801,498 - -2.0 801,547 + +0.4 801,549 + +0.3 801,553 + +2.9 801,554 - +0.3 801,554 - -0.2 801,567 + +1.7 801,604 + +0.2 801,604 + +1.0 801,604 + -0.8 801,604 + +0.5 801,666 + CA264_03440 0.18 +1.3 801,667 - CA264_03440 0.18 -0.1 801,775 - CA264_03440 0.45 +1.4 801,907 + CA264_03440 0.78 +1.2 801,908 - CA264_03440 0.78 -0.5 801,925 + CA264_03440 0.83 +1.1 801,926 - CA264_03440 0.83 +0.4 801,926 - CA264_03440 0.83 -0.1 801,984 + +0.7 802,004 + +1.2 802,010 + +1.3 802,011 - +0.2 802,011 - +0.2 802,011 - +0.5 802,013 + +0.7 802,014 - +0.9 802,074 - -0.9 802,077 + +1.7 802,077 + +1.4 802,077 + +1.9 802,077 + +2.0 802,077 + +1.9 802,078 - +1.1 802,078 - +0.8 802,078 - +0.5 802,110 + +0.5 802,111 - +0.8 802,111 - +1.2 802,117 - -0.0 802,117 - +1.4 802,217 - +1.5 802,229 + +2.2 802,230 - +1.1 802,231 + +2.1 802,231 + +1.7 802,231 + +1.8 802,232 - +1.6 802,238 + +0.7 802,238 + +2.2 802,324 + +2.5 802,324 + +2.1 802,325 - +1.2 802,334 + +1.5 802,335 - +1.7 802,388 + +0.5 802,433 - +0.7 802,433 - +2.0 802,536 - CA264_03445 0.17 +0.4 802,587 + CA264_03445 0.21 +2.0 802,588 - CA264_03445 0.21 +0.6 802,588 - CA264_03445 0.21 +1.3 802,689 + CA264_03445 0.29 +2.3 802,690 - CA264_03445 0.30 -0.1 802,690 - CA264_03445 0.30 +0.4 802,690 - -0.1 802,712 + CA264_03445 0.31 +1.8 802,712 + CA264_03445 0.31 +1.4 802,713 - CA264_03445 0.32 +0.7 802,717 + CA264_03445 0.32 +2.6 802,717 + CA264_03445 0.32 -1.1 802,717 + CA264_03445 0.32 +1.7 802,742 - CA264_03445 0.34 +3.7 802,742 - CA264_03445 0.34 +0.5 802,747 + CA264_03445 0.34 +2.3 802,747 + CA264_03445 0.34 +1.0 802,748 - CA264_03445 0.34 +2.1 802,787 - CA264_03445 0.38 +1.1 802,787 - CA264_03445 0.38 +1.4 802,787 - CA264_03445 0.38 +1.0 802,861 - CA264_03445 0.44 +0.8 802,901 + CA264_03445 0.47 +1.2 802,901 + CA264_03445 0.47 -0.4 802,950 - CA264_03445 0.51 -0.1 802,993 + CA264_03445 0.55 +2.2 803,004 + CA264_03445 0.56 +1.8 803,005 - CA264_03445 0.56 +1.0 803,006 + CA264_03445 0.56 +2.5 803,053 + CA264_03445 0.60 +2.5 803,098 + CA264_03445 0.64 +2.6 803,099 - CA264_03445 0.64 +2.9 803,099 - CA264_03445 0.64 +1.8 803,099 - CA264_03445 0.64 +0.9 803,231 - CA264_03445 0.75 +1.2 803,398 + CA264_03445 0.89 +2.9 803,553 - +1.1 803,563 + +0.9 803,575 + +1.3 803,575 + +0.1 803,584 - +1.1 803,584 - +0.6 803,597 - +2.7 803,601 + -1.1 803,657 + +0.6 803,657 + +0.3 803,770 - -0.2 803,770 - -0.1 803,770 - -0.3 803,833 + +1.9 803,833 + -0.0 803,833 + +0.9 803,836 - +1.1 803,851 + +0.5 803,852 - -0.1 803,852 - +0.9 803,862 + -0.2 803,901 + CA264_03450 0.11 -1.9 803,902 - CA264_03450 0.11 -1.0 803,902 - CA264_03450 0.11 +0.9 803,945 + CA264_03450 0.12 -0.1 804,006 + CA264_03450 0.14 +0.2 804,006 + CA264_03450 0.14 +0.9 804,006 + CA264_03450 0.14 -0.0 804,007 - CA264_03450 0.14 +0.9 804,007 - CA264_03450 0.14 +0.2 804,007 - CA264_03450 0.14 +0.9 804,007 - CA264_03450 0.14 +0.6 804,081 - CA264_03450 0.17 -0.2 804,126 + CA264_03450 0.18 +0.1 804,127 - CA264_03450 0.18 +1.9 804,148 - CA264_03450 0.19 -0.5 804,153 + CA264_03450 0.19 -1.7 804,154 - CA264_03450 0.19 -0.8 804,154 - CA264_03450 0.19 -1.2 804,154 - CA264_03450 0.19 -0.7 804,154 - CA264_03450 0.19 -0.2 804,181 + CA264_03450 0.20 +1.5 804,182 - CA264_03450 0.20 -0.1 804,182 - CA264_03450 0.20 -1.1 804,182 - CA264_03450 0.20 -1.9 804,182 - CA264_03450 0.20 +0.9 804,241 + CA264_03450 0.22 -0.6 804,261 - CA264_03450 0.22 +0.2 804,261 - CA264_03450 0.22 +0.7 804,264 + CA264_03450 0.23 +0.3 804,265 - CA264_03450 0.23 +0.2 804,281 + CA264_03450 0.23 -0.2 804,281 + CA264_03450 0.23 -0.7 804,282 - CA264_03450 0.23 -0.6 804,282 - CA264_03450 0.23 -1.3 804,282 - CA264_03450 0.23 +1.6 804,289 - CA264_03450 0.23 -0.6 804,322 - CA264_03450 0.25 -0.3 804,325 + CA264_03450 0.25 +0.3 804,325 + CA264_03450 0.25 +1.2 804,325 + CA264_03450 0.25 +1.0 804,325 + CA264_03450 0.25 -0.1 804,325 + CA264_03450 0.25 +0.1 804,326 - CA264_03450 0.25 +0.5 804,385 - CA264_03450 0.27 -0.4 804,406 - CA264_03450 0.27 +0.3
Or see this region's nucleotide sequence