Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02930 and CA264_02935 are separated by 40 nucleotides CA264_02935 and CA264_02940 are separated by 53 nucleotides CA264_02940 and CA264_02945 are separated by 132 nucleotides CA264_02945 and CA264_02950 are separated by 9 nucleotides
CA264_02930: CA264_02930 - copper-translocating P-type ATPase, at 668,245 to 670,479
_02930
CA264_02935: CA264_02935 - hypothetical protein, at 670,520 to 670,729
_02935
CA264_02940: CA264_02940 - hypothetical protein, at 670,783 to 671,175
_02940
CA264_02945: CA264_02945 - hypothetical protein, at 671,308 to 672,327
_02945
CA264_02950: CA264_02950 - T9SS C-terminal target domain-containing protein, at 672,337 to 678,201
_02950
Position (kb) 671
672
673 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 670.653 kb on + strand, within CA264_02935 at 670.727 kb on + strand at 670.739 kb on + strand at 670.739 kb on + strand at 670.740 kb on - strand at 670.740 kb on - strand at 670.741 kb on + strand at 670.741 kb on + strand at 670.742 kb on - strand at 670.742 kb on - strand at 670.742 kb on - strand at 670.742 kb on - strand at 670.745 kb on + strand at 670.745 kb on + strand at 670.745 kb on + strand at 670.746 kb on - strand at 670.754 kb on - strand at 670.779 kb on - strand at 670.822 kb on + strand at 670.880 kb on + strand, within CA264_02940 at 670.880 kb on + strand, within CA264_02940 at 670.915 kb on + strand, within CA264_02940 at 670.916 kb on - strand, within CA264_02940 at 670.916 kb on - strand, within CA264_02940 at 670.916 kb on - strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.973 kb on + strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.974 kb on - strand, within CA264_02940 at 670.991 kb on + strand, within CA264_02940 at 670.991 kb on + strand, within CA264_02940 at 671.053 kb on + strand, within CA264_02940 at 671.054 kb on - strand, within CA264_02940 at 671.073 kb on - strand, within CA264_02940 at 671.108 kb on + strand, within CA264_02940 at 671.108 kb on + strand, within CA264_02940 at 671.108 kb on + strand, within CA264_02940 at 671.109 kb on - strand, within CA264_02940 at 671.143 kb on + strand at 671.144 kb on - strand at 671.144 kb on - strand at 671.144 kb on - strand at 671.175 kb on + strand at 671.175 kb on + strand at 671.175 kb on + strand at 671.176 kb on - strand at 671.176 kb on - strand at 671.177 kb on + strand at 671.178 kb on - strand at 671.178 kb on - strand at 671.178 kb on - strand at 671.188 kb on + strand at 671.188 kb on + strand at 671.188 kb on + strand at 671.191 kb on - strand at 671.267 kb on - strand at 671.267 kb on - strand at 671.300 kb on + strand at 671.301 kb on - strand at 671.301 kb on - strand at 671.331 kb on + strand at 671.642 kb on + strand, within CA264_02945 at 671.643 kb on - strand, within CA264_02945 at 671.888 kb on - strand, within CA264_02945 at 671.936 kb on + strand, within CA264_02945 at 671.979 kb on + strand, within CA264_02945 at 672.083 kb on + strand, within CA264_02945 at 672.084 kb on - strand, within CA264_02945 at 672.128 kb on + strand, within CA264_02945 at 672.191 kb on + strand, within CA264_02945 at 672.231 kb on + strand at 672.231 kb on + strand at 672.231 kb on + strand at 672.398 kb on + strand at 672.398 kb on + strand at 672.746 kb on + strand at 672.747 kb on - strand at 672.890 kb on + strand at 673.030 kb on + strand, within CA264_02950
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 670,653 + CA264_02935 0.63 +3.5 670,727 + +0.3 670,739 + +0.9 670,739 + +0.2 670,740 - -1.8 670,740 - -0.1 670,741 + +1.9 670,741 + +0.5 670,742 - -2.1 670,742 - -2.6 670,742 - -0.8 670,742 - -0.1 670,745 + +0.5 670,745 + -0.4 670,745 + +0.1 670,746 - +0.3 670,754 - -0.1 670,779 - -0.2 670,822 + -1.0 670,880 + CA264_02940 0.25 +0.0 670,880 + CA264_02940 0.25 +2.7 670,915 + CA264_02940 0.34 +0.1 670,916 - CA264_02940 0.34 +0.2 670,916 - CA264_02940 0.34 -0.7 670,916 - CA264_02940 0.34 +0.1 670,973 + CA264_02940 0.48 -0.8 670,973 + CA264_02940 0.48 -0.7 670,973 + CA264_02940 0.48 -0.7 670,973 + CA264_02940 0.48 +0.5 670,973 + CA264_02940 0.48 -0.1 670,973 + CA264_02940 0.48 -0.9 670,974 - CA264_02940 0.49 +0.6 670,974 - CA264_02940 0.49 +0.3 670,974 - CA264_02940 0.49 +1.3 670,974 - CA264_02940 0.49 -1.0 670,974 - CA264_02940 0.49 -0.3 670,974 - CA264_02940 0.49 +1.5 670,974 - CA264_02940 0.49 -1.9 670,991 + CA264_02940 0.53 -1.1 670,991 + CA264_02940 0.53 -0.7 671,053 + CA264_02940 0.69 +1.2 671,054 - CA264_02940 0.69 -0.7 671,073 - CA264_02940 0.74 -0.3 671,108 + CA264_02940 0.83 +0.5 671,108 + CA264_02940 0.83 +1.5 671,108 + CA264_02940 0.83 -0.2 671,109 - CA264_02940 0.83 +1.9 671,143 + -0.1 671,144 - +0.4 671,144 - -1.1 671,144 - -0.3 671,175 + -0.1 671,175 + -0.3 671,175 + -0.4 671,176 - -1.1 671,176 - -0.1 671,177 + +0.3 671,178 - -0.7 671,178 - -0.2 671,178 - +0.1 671,188 + +0.0 671,188 + -0.1 671,188 + -0.1 671,191 - +0.4 671,267 - +0.8 671,267 - -1.1 671,300 + -2.3 671,301 - -0.5 671,301 - -0.1 671,331 + -0.7 671,642 + CA264_02945 0.33 +0.9 671,643 - CA264_02945 0.33 -0.4 671,888 - CA264_02945 0.57 -0.1 671,936 + CA264_02945 0.62 +1.6 671,979 + CA264_02945 0.66 -1.7 672,083 + CA264_02945 0.76 +0.8 672,084 - CA264_02945 0.76 +1.5 672,128 + CA264_02945 0.80 -0.1 672,191 + CA264_02945 0.87 +0.0 672,231 + +0.8 672,231 + +1.1 672,231 + +0.4 672,398 + +1.6 672,398 + +1.0 672,746 + +0.6 672,747 - +2.0 672,890 + +0.6 673,030 + CA264_02950 0.12 +1.2
Or see this region's nucleotide sequence