Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02655

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02650 and CA264_02655 are separated by 283 nucleotidesCA264_02655 and CA264_02660 are separated by 68 nucleotidesCA264_02660 and CA264_02665 are separated by 40 nucleotides CA264_02650: CA264_02650 - DNA topoisomerase III, at 612,918 to 615,365 _02650 CA264_02655: CA264_02655 - hypothetical protein, at 615,649 to 616,494 _02655 CA264_02660: CA264_02660 - hypothetical protein, at 616,563 to 617,108 _02660 CA264_02665: CA264_02665 - hypothetical protein, at 617,149 to 617,370 _02665 Position (kb) 615 616 617Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 614.676 kb on - strand, within CA264_02650at 615.004 kb on + strand, within CA264_02650at 615.005 kb on - strand, within CA264_02650at 615.005 kb on - strand, within CA264_02650at 615.033 kb on + strand, within CA264_02650at 615.033 kb on + strand, within CA264_02650at 615.034 kb on - strand, within CA264_02650at 615.181 kb on + strandat 615.257 kb on + strandat 615.258 kb on - strandat 615.265 kb on + strandat 615.280 kb on + strandat 615.281 kb on - strandat 615.281 kb on - strandat 615.284 kb on - strandat 615.382 kb on + strandat 615.383 kb on - strandat 615.390 kb on - strandat 615.443 kb on + strandat 615.443 kb on + strandat 615.444 kb on - strandat 615.444 kb on - strandat 615.444 kb on - strandat 615.444 kb on - strandat 615.444 kb on - strandat 615.444 kb on - strandat 615.444 kb on - strandat 615.444 kb on - strandat 615.445 kb on + strandat 615.445 kb on + strandat 615.445 kb on + strandat 615.446 kb on - strandat 615.446 kb on - strandat 615.446 kb on - strandat 615.473 kb on - strandat 615.579 kb on + strandat 615.617 kb on + strandat 615.617 kb on + strandat 615.688 kb on + strandat 615.688 kb on + strandat 615.714 kb on + strandat 615.716 kb on + strandat 615.717 kb on - strandat 615.717 kb on - strandat 615.780 kb on - strand, within CA264_02655at 615.780 kb on - strand, within CA264_02655at 615.830 kb on + strand, within CA264_02655at 615.846 kb on - strand, within CA264_02655at 616.002 kb on + strand, within CA264_02655at 616.010 kb on + strand, within CA264_02655at 616.011 kb on - strand, within CA264_02655at 616.024 kb on - strand, within CA264_02655at 616.042 kb on + strand, within CA264_02655at 616.042 kb on + strand, within CA264_02655at 616.043 kb on - strand, within CA264_02655at 616.095 kb on + strand, within CA264_02655at 616.105 kb on + strand, within CA264_02655at 616.105 kb on + strand, within CA264_02655at 616.105 kb on + strand, within CA264_02655at 616.105 kb on + strand, within CA264_02655at 616.106 kb on - strand, within CA264_02655at 616.115 kb on - strand, within CA264_02655at 616.154 kb on + strand, within CA264_02655at 616.238 kb on - strand, within CA264_02655at 616.315 kb on - strand, within CA264_02655at 616.369 kb on + strand, within CA264_02655at 616.370 kb on - strand, within CA264_02655at 616.450 kb on - strandat 616.532 kb on - strandat 616.532 kb on - strandat 616.619 kb on - strand, within CA264_02660at 616.668 kb on + strand, within CA264_02660at 616.685 kb on + strand, within CA264_02660at 616.686 kb on - strand, within CA264_02660at 616.686 kb on - strand, within CA264_02660at 616.759 kb on + strand, within CA264_02660at 616.789 kb on + strand, within CA264_02660at 616.845 kb on + strand, within CA264_02660at 616.845 kb on + strand, within CA264_02660at 616.846 kb on - strand, within CA264_02660at 616.846 kb on - strand, within CA264_02660at 616.848 kb on + strand, within CA264_02660at 616.848 kb on + strand, within CA264_02660at 616.849 kb on - strand, within CA264_02660at 616.900 kb on - strand, within CA264_02660at 616.902 kb on + strand, within CA264_02660at 616.902 kb on + strand, within CA264_02660at 616.902 kb on + strand, within CA264_02660at 616.903 kb on - strand, within CA264_02660at 616.976 kb on + strand, within CA264_02660at 616.977 kb on - strand, within CA264_02660at 616.981 kb on + strand, within CA264_02660at 617.008 kb on + strand, within CA264_02660at 617.008 kb on + strand, within CA264_02660at 617.009 kb on - strand, within CA264_02660at 617.009 kb on - strand, within CA264_02660at 617.016 kb on + strand, within CA264_02660at 617.189 kb on + strand, within CA264_02665at 617.189 kb on + strand, within CA264_02665at 617.189 kb on + strand, within CA264_02665at 617.189 kb on + strand, within CA264_02665at 617.190 kb on - strand, within CA264_02665at 617.229 kb on + strand, within CA264_02665at 617.230 kb on - strand, within CA264_02665at 617.294 kb on - strand, within CA264_02665at 617.301 kb on + strand, within CA264_02665at 617.406 kb on - strandat 617.424 kb on + strandat 617.426 kb on + strandat 617.461 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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614,676 - CA264_02650 0.72 +0.3
615,004 + CA264_02650 0.85 -0.7
615,005 - CA264_02650 0.85 -0.1
615,005 - CA264_02650 0.85 -1.2
615,033 + CA264_02650 0.86 -2.3
615,033 + CA264_02650 0.86 +0.0
615,034 - CA264_02650 0.86 -1.6
615,181 + -0.5
615,257 + -0.5
615,258 - -1.3
615,265 + -1.0
615,280 + -1.1
615,281 - -1.0
615,281 - -0.9
615,284 - -0.6
615,382 + +0.9
615,383 - +0.6
615,390 - +0.1
615,443 + +0.1
615,443 + +0.4
615,444 - +1.7
615,444 - +1.9
615,444 - -0.1
615,444 - +1.1
615,444 - -0.5
615,444 - +0.2
615,444 - -0.1
615,444 - -1.7
615,445 + +0.1
615,445 + +0.5
615,445 + +0.9
615,446 - +0.3
615,446 - +0.9
615,446 - +1.4
615,473 - +0.0
615,579 + +0.8
615,617 + -0.9
615,617 + +0.6
615,688 + -0.5
615,688 + +1.2
615,714 + +1.7
615,716 + -0.3
615,717 - -0.1
615,717 - -0.3
615,780 - CA264_02655 0.15 -1.5
615,780 - CA264_02655 0.15 -0.0
615,830 + CA264_02655 0.21 +0.2
615,846 - CA264_02655 0.23 -0.6
616,002 + CA264_02655 0.42 +1.1
616,010 + CA264_02655 0.43 +2.4
616,011 - CA264_02655 0.43 +1.2
616,024 - CA264_02655 0.44 +0.4
616,042 + CA264_02655 0.46 -1.0
616,042 + CA264_02655 0.46 +0.3
616,043 - CA264_02655 0.47 +0.4
616,095 + CA264_02655 0.53 -0.9
616,105 + CA264_02655 0.54 +0.1
616,105 + CA264_02655 0.54 +0.3
616,105 + CA264_02655 0.54 +0.5
616,105 + CA264_02655 0.54 +0.1
616,106 - CA264_02655 0.54 -1.5
616,115 - CA264_02655 0.55 +0.7
616,154 + CA264_02655 0.60 +0.2
616,238 - CA264_02655 0.70 +0.0
616,315 - CA264_02655 0.79 +1.8
616,369 + CA264_02655 0.85 -1.7
616,370 - CA264_02655 0.85 -0.9
616,450 - +0.6
616,532 - +0.6
616,532 - -0.5
616,619 - CA264_02660 0.10 +0.2
616,668 + CA264_02660 0.19 +0.6
616,685 + CA264_02660 0.22 +0.5
616,686 - CA264_02660 0.23 -0.1
616,686 - CA264_02660 0.23 -0.7
616,759 + CA264_02660 0.36 -0.8
616,789 + CA264_02660 0.41 +1.1
616,845 + CA264_02660 0.52 -0.1
616,845 + CA264_02660 0.52 +2.2
616,846 - CA264_02660 0.52 +0.6
616,846 - CA264_02660 0.52 -0.4
616,848 + CA264_02660 0.52 +1.7
616,848 + CA264_02660 0.52 +0.5
616,849 - CA264_02660 0.52 +0.2
616,900 - CA264_02660 0.62 -1.5
616,902 + CA264_02660 0.62 +1.6
616,902 + CA264_02660 0.62 +0.5
616,902 + CA264_02660 0.62 -0.3
616,903 - CA264_02660 0.62 +0.4
616,976 + CA264_02660 0.76 -0.0
616,977 - CA264_02660 0.76 +0.9
616,981 + CA264_02660 0.77 -0.0
617,008 + CA264_02660 0.82 +0.4
617,008 + CA264_02660 0.82 +0.3
617,009 - CA264_02660 0.82 -2.9
617,009 - CA264_02660 0.82 +0.1
617,016 + CA264_02660 0.83 -0.4
617,189 + CA264_02665 0.18 +1.5
617,189 + CA264_02665 0.18 -0.0
617,189 + CA264_02665 0.18 +0.5
617,189 + CA264_02665 0.18 -1.5
617,190 - CA264_02665 0.18 -0.5
617,229 + CA264_02665 0.36 -0.2
617,230 - CA264_02665 0.36 -0.1
617,294 - CA264_02665 0.65 +2.0
617,301 + CA264_02665 0.68 +1.5
617,406 - -1.0
617,424 + +0.9
617,426 + +0.1
617,461 + +0.1

Or see this region's nucleotide sequence