Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02460

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02450 and CA264_02455 are separated by 65 nucleotidesCA264_02455 and CA264_02460 overlap by 91 nucleotidesCA264_02460 and CA264_02465 overlap by 4 nucleotidesCA264_02465 and CA264_02470 are separated by 99 nucleotides CA264_02450: CA264_02450 - hypothetical protein, at 572,012 to 572,236 _02450 CA264_02455: CA264_02455 - hypothetical protein, at 572,302 to 572,970 _02455 CA264_02460: CA264_02460 - sugar dehydrogenase, at 572,880 to 573,689 _02460 CA264_02465: CA264_02465 - hypothetical protein, at 573,686 to 573,901 _02465 CA264_02470: CA264_02470 - alkaline phosphatase family protein, at 574,001 to 575,404 _02470 Position (kb) 572 573 574Strain fitness (log2 ratio) -2 -1 0 1at 571.919 kb on + strandat 571.920 kb on - strandat 571.930 kb on - strandat 571.940 kb on - strandat 571.940 kb on - strandat 571.940 kb on - strandat 571.977 kb on + strandat 572.053 kb on - strand, within CA264_02450at 572.053 kb on - strand, within CA264_02450at 572.053 kb on - strand, within CA264_02450at 572.056 kb on - strand, within CA264_02450at 572.071 kb on + strand, within CA264_02450at 572.071 kb on + strand, within CA264_02450at 572.076 kb on + strand, within CA264_02450at 572.078 kb on + strand, within CA264_02450at 572.102 kb on + strand, within CA264_02450at 572.199 kb on + strandat 572.219 kb on + strandat 572.219 kb on + strandat 572.222 kb on + strandat 572.222 kb on + strandat 572.246 kb on - strandat 572.248 kb on - strandat 572.259 kb on - strandat 572.263 kb on - strandat 572.321 kb on + strandat 572.321 kb on + strandat 572.321 kb on + strandat 572.321 kb on + strandat 572.322 kb on - strandat 572.367 kb on + strandat 572.408 kb on + strand, within CA264_02455at 572.409 kb on - strand, within CA264_02455at 572.422 kb on - strand, within CA264_02455at 572.499 kb on + strand, within CA264_02455at 572.535 kb on - strand, within CA264_02455at 572.535 kb on - strand, within CA264_02455at 572.592 kb on + strand, within CA264_02455at 572.614 kb on - strand, within CA264_02455at 572.617 kb on + strand, within CA264_02455at 572.618 kb on - strand, within CA264_02455at 572.618 kb on - strand, within CA264_02455at 572.618 kb on - strand, within CA264_02455at 572.632 kb on - strand, within CA264_02455at 572.632 kb on - strand, within CA264_02455at 572.642 kb on - strand, within CA264_02455at 572.723 kb on - strand, within CA264_02455at 572.723 kb on - strand, within CA264_02455at 572.739 kb on + strand, within CA264_02455at 572.739 kb on + strand, within CA264_02455at 572.740 kb on - strand, within CA264_02455at 572.746 kb on - strand, within CA264_02455at 572.770 kb on + strand, within CA264_02455at 572.833 kb on + strand, within CA264_02455at 572.855 kb on - strand, within CA264_02455at 572.882 kb on - strandat 572.923 kb on + strandat 572.924 kb on - strandat 572.940 kb on + strandat 572.945 kb on - strandat 572.945 kb on - strandat 572.945 kb on - strandat 572.976 kb on + strand, within CA264_02460at 573.086 kb on + strand, within CA264_02460at 573.407 kb on + strand, within CA264_02460at 573.450 kb on + strand, within CA264_02460at 573.451 kb on - strand, within CA264_02460at 573.565 kb on + strand, within CA264_02460at 573.682 kb on + strandat 573.783 kb on + strand, within CA264_02465at 573.784 kb on - strand, within CA264_02465at 573.784 kb on - strand, within CA264_02465at 573.876 kb on - strand, within CA264_02465at 573.881 kb on - strandat 573.896 kb on + strandat 573.923 kb on + strandat 573.924 kb on - strandat 573.939 kb on + strandat 573.939 kb on + strandat 573.966 kb on - strandat 573.995 kb on + strandat 573.995 kb on + strandat 574.004 kb on + strandat 574.004 kb on + strandat 574.004 kb on + strandat 574.004 kb on + strandat 574.004 kb on + strandat 574.004 kb on + strandat 574.037 kb on + strandat 574.053 kb on - strandat 574.057 kb on + strandat 574.057 kb on + strandat 574.058 kb on - strandat 574.058 kb on - strandat 574.060 kb on + strandat 574.060 kb on + strandat 574.061 kb on - strandat 574.061 kb on - strandat 574.106 kb on - strandat 574.106 kb on - strandat 574.108 kb on - strandat 574.139 kb on - strandat 574.193 kb on - strand, within CA264_02470at 574.195 kb on + strand, within CA264_02470at 574.313 kb on - strand, within CA264_02470at 574.322 kb on + strand, within CA264_02470at 574.372 kb on - strand, within CA264_02470at 574.375 kb on + strand, within CA264_02470at 574.437 kb on + strand, within CA264_02470at 574.533 kb on + strand, within CA264_02470at 574.533 kb on + strand, within CA264_02470at 574.534 kb on - strand, within CA264_02470at 574.681 kb on + strand, within CA264_02470

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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571,919 + +0.6
571,920 - -0.3
571,930 - +0.3
571,940 - -0.7
571,940 - -0.6
571,940 - -0.5
571,977 + -0.5
572,053 - CA264_02450 0.18 -1.2
572,053 - CA264_02450 0.18 -0.6
572,053 - CA264_02450 0.18 +0.0
572,056 - CA264_02450 0.20 -0.1
572,071 + CA264_02450 0.26 +0.3
572,071 + CA264_02450 0.26 +0.3
572,076 + CA264_02450 0.28 -0.5
572,078 + CA264_02450 0.29 +0.8
572,102 + CA264_02450 0.40 +0.2
572,199 + +0.8
572,219 + +0.5
572,219 + +0.3
572,222 + +0.1
572,222 + +0.4
572,246 - +0.0
572,248 - +0.4
572,259 - +0.5
572,263 - -0.3
572,321 + +0.3
572,321 + -0.5
572,321 + -1.1
572,321 + +0.0
572,322 - -0.0
572,367 + -1.2
572,408 + CA264_02455 0.16 +0.4
572,409 - CA264_02455 0.16 +0.4
572,422 - CA264_02455 0.18 -0.7
572,499 + CA264_02455 0.29 -0.0
572,535 - CA264_02455 0.35 +0.2
572,535 - CA264_02455 0.35 +0.5
572,592 + CA264_02455 0.43 -0.0
572,614 - CA264_02455 0.47 -0.7
572,617 + CA264_02455 0.47 +0.4
572,618 - CA264_02455 0.47 +1.3
572,618 - CA264_02455 0.47 -0.3
572,618 - CA264_02455 0.47 +0.8
572,632 - CA264_02455 0.49 -1.0
572,632 - CA264_02455 0.49 -0.2
572,642 - CA264_02455 0.51 -0.7
572,723 - CA264_02455 0.63 -0.5
572,723 - CA264_02455 0.63 -0.1
572,739 + CA264_02455 0.65 -0.8
572,739 + CA264_02455 0.65 -1.1
572,740 - CA264_02455 0.65 -0.4
572,746 - CA264_02455 0.66 -0.2
572,770 + CA264_02455 0.70 -0.7
572,833 + CA264_02455 0.79 +1.4
572,855 - CA264_02455 0.83 +0.8
572,882 - -0.0
572,923 + -1.2
572,924 - -0.4
572,940 + -1.1
572,945 - -0.7
572,945 - -0.9
572,945 - -0.3
572,976 + CA264_02460 0.12 -2.2
573,086 + CA264_02460 0.25 -0.6
573,407 + CA264_02460 0.65 +0.7
573,450 + CA264_02460 0.70 -0.2
573,451 - CA264_02460 0.70 -0.2
573,565 + CA264_02460 0.85 -0.1
573,682 + +1.7
573,783 + CA264_02465 0.45 -1.6
573,784 - CA264_02465 0.45 -0.4
573,784 - CA264_02465 0.45 -1.0
573,876 - CA264_02465 0.88 -0.1
573,881 - -0.4
573,896 + +0.6
573,923 + +1.6
573,924 - -0.3
573,939 + -0.2
573,939 + -0.7
573,966 - -0.1
573,995 + -0.2
573,995 + +0.3
574,004 + +0.1
574,004 + -1.0
574,004 + -0.0
574,004 + -0.3
574,004 + +0.8
574,004 + +1.2
574,037 + +0.3
574,053 - -1.4
574,057 + -1.9
574,057 + +0.0
574,058 - -2.0
574,058 - +0.8
574,060 + +0.6
574,060 + -0.7
574,061 - +0.4
574,061 - +1.4
574,106 - +0.4
574,106 - +0.2
574,108 - +0.8
574,139 - -0.3
574,193 - CA264_02470 0.14 -1.2
574,195 + CA264_02470 0.14 -1.1
574,313 - CA264_02470 0.22 +0.4
574,322 + CA264_02470 0.23 -0.4
574,372 - CA264_02470 0.26 -1.0
574,375 + CA264_02470 0.27 -2.2
574,437 + CA264_02470 0.31 -1.6
574,533 + CA264_02470 0.38 +1.5
574,533 + CA264_02470 0.38 -1.2
574,534 - CA264_02470 0.38 +0.4
574,681 + CA264_02470 0.48 +0.6

Or see this region's nucleotide sequence