Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02260

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02255 and CA264_02260 are separated by 45 nucleotidesCA264_02260 and CA264_02265 overlap by 20 nucleotidesCA264_02265 and CA264_02270 are separated by 79 nucleotides CA264_02255: CA264_02255 - hypothetical protein, at 522,173 to 522,916 _02255 CA264_02260: CA264_02260 - hypothetical protein, at 522,962 to 525,358 _02260 CA264_02265: CA264_02265 - phosphonate ABC transporter ATP-binding protein, at 525,339 to 526,058 _02265 CA264_02270: CA264_02270 - efflux transporter periplasmic adaptor subunit, at 526,138 to 527,388 _02270 Position (kb) 522 523 524 525 526Strain fitness (log2 ratio) -2 -1 0 1 2 3at 521.985 kb on - strandat 521.985 kb on - strandat 522.055 kb on - strandat 522.107 kb on - strandat 522.126 kb on + strandat 522.134 kb on + strandat 522.264 kb on + strand, within CA264_02255at 522.267 kb on + strand, within CA264_02255at 522.267 kb on + strand, within CA264_02255at 522.268 kb on - strand, within CA264_02255at 522.359 kb on + strand, within CA264_02255at 522.475 kb on + strand, within CA264_02255at 522.512 kb on + strand, within CA264_02255at 522.512 kb on + strand, within CA264_02255at 522.548 kb on + strand, within CA264_02255at 522.549 kb on - strand, within CA264_02255at 522.549 kb on - strand, within CA264_02255at 522.622 kb on + strand, within CA264_02255at 522.671 kb on + strand, within CA264_02255at 522.671 kb on + strand, within CA264_02255at 522.672 kb on - strand, within CA264_02255at 522.906 kb on - strandat 523.038 kb on - strandat 523.089 kb on - strandat 523.089 kb on - strandat 523.196 kb on + strandat 523.196 kb on + strandat 523.197 kb on - strandat 523.204 kb on + strand, within CA264_02260at 523.204 kb on + strand, within CA264_02260at 523.308 kb on - strand, within CA264_02260at 523.395 kb on + strand, within CA264_02260at 523.704 kb on + strand, within CA264_02260at 523.704 kb on + strand, within CA264_02260at 523.813 kb on + strand, within CA264_02260at 523.954 kb on + strand, within CA264_02260at 523.969 kb on + strand, within CA264_02260at 524.057 kb on + strand, within CA264_02260at 524.057 kb on + strand, within CA264_02260at 524.058 kb on - strand, within CA264_02260at 524.099 kb on - strand, within CA264_02260at 524.355 kb on - strand, within CA264_02260at 524.443 kb on - strand, within CA264_02260at 524.446 kb on + strand, within CA264_02260at 524.446 kb on + strand, within CA264_02260at 524.446 kb on + strand, within CA264_02260at 524.447 kb on - strand, within CA264_02260at 524.499 kb on + strand, within CA264_02260at 524.499 kb on + strand, within CA264_02260at 524.500 kb on - strand, within CA264_02260at 524.500 kb on - strand, within CA264_02260at 524.500 kb on - strand, within CA264_02260at 524.524 kb on + strand, within CA264_02260at 524.524 kb on + strand, within CA264_02260at 524.525 kb on - strand, within CA264_02260at 524.650 kb on + strand, within CA264_02260at 524.695 kb on - strand, within CA264_02260at 524.695 kb on - strand, within CA264_02260at 524.695 kb on - strand, within CA264_02260at 524.695 kb on - strand, within CA264_02260at 524.701 kb on - strand, within CA264_02260at 524.923 kb on + strand, within CA264_02260at 525.107 kb on - strand, within CA264_02260at 525.167 kb on - strandat 525.167 kb on - strandat 525.205 kb on + strandat 525.240 kb on + strandat 525.240 kb on + strandat 525.240 kb on + strandat 525.241 kb on - strandat 525.241 kb on - strandat 525.241 kb on - strandat 525.241 kb on - strandat 525.246 kb on + strandat 525.246 kb on + strandat 525.247 kb on - strandat 525.247 kb on - strandat 525.248 kb on + strandat 525.248 kb on + strandat 525.248 kb on + strandat 525.248 kb on + strandat 525.248 kb on + strandat 525.249 kb on - strandat 525.251 kb on - strandat 525.303 kb on + strandat 525.305 kb on + strandat 525.305 kb on + strandat 525.306 kb on - strandat 525.306 kb on - strandat 525.306 kb on - strandat 525.306 kb on - strandat 525.340 kb on + strandat 525.345 kb on + strandat 525.553 kb on - strand, within CA264_02265at 525.554 kb on + strand, within CA264_02265at 525.703 kb on + strand, within CA264_02265at 525.747 kb on + strand, within CA264_02265at 525.764 kb on + strand, within CA264_02265at 525.905 kb on + strand, within CA264_02265at 525.957 kb on + strand, within CA264_02265at 525.958 kb on - strand, within CA264_02265at 526.010 kb on - strandat 526.039 kb on - strandat 526.042 kb on - strandat 526.071 kb on - strandat 526.077 kb on - strandat 526.095 kb on + strandat 526.105 kb on + strandat 526.105 kb on + strandat 526.106 kb on - strandat 526.140 kb on - strandat 526.192 kb on + strandat 526.192 kb on + strandat 526.233 kb on - strandat 526.329 kb on - strand, within CA264_02270at 526.329 kb on - strand, within CA264_02270

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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521,985 - +2.0
521,985 - +1.8
522,055 - +1.2
522,107 - +0.4
522,126 + +0.9
522,134 + +2.0
522,264 + CA264_02255 0.12 +0.7
522,267 + CA264_02255 0.13 +1.1
522,267 + CA264_02255 0.13 -0.7
522,268 - CA264_02255 0.13 +0.8
522,359 + CA264_02255 0.25 +0.8
522,475 + CA264_02255 0.41 +1.1
522,512 + CA264_02255 0.46 +1.3
522,512 + CA264_02255 0.46 +1.4
522,548 + CA264_02255 0.50 -0.1
522,549 - CA264_02255 0.51 +0.8
522,549 - CA264_02255 0.51 +1.7
522,622 + CA264_02255 0.60 +1.0
522,671 + CA264_02255 0.67 +0.8
522,671 + CA264_02255 0.67 +1.8
522,672 - CA264_02255 0.67 +1.5
522,906 - +1.2
523,038 - +1.3
523,089 - +1.3
523,089 - -0.7
523,196 + +0.4
523,196 + +0.4
523,197 - +2.3
523,204 + CA264_02260 0.10 +1.0
523,204 + CA264_02260 0.10 -2.3
523,308 - CA264_02260 0.14 +2.4
523,395 + CA264_02260 0.18 -2.2
523,704 + CA264_02260 0.31 +0.7
523,704 + CA264_02260 0.31 -1.5
523,813 + CA264_02260 0.36 +0.8
523,954 + CA264_02260 0.41 +0.4
523,969 + CA264_02260 0.42 +0.9
524,057 + CA264_02260 0.46 +0.9
524,057 + CA264_02260 0.46 +1.4
524,058 - CA264_02260 0.46 +1.7
524,099 - CA264_02260 0.47 +0.6
524,355 - CA264_02260 0.58 -0.8
524,443 - CA264_02260 0.62 +0.5
524,446 + CA264_02260 0.62 +1.0
524,446 + CA264_02260 0.62 +0.4
524,446 + CA264_02260 0.62 +0.8
524,447 - CA264_02260 0.62 +1.4
524,499 + CA264_02260 0.64 -1.4
524,499 + CA264_02260 0.64 -0.8
524,500 - CA264_02260 0.64 +1.4
524,500 - CA264_02260 0.64 +1.9
524,500 - CA264_02260 0.64 +0.4
524,524 + CA264_02260 0.65 +0.8
524,524 + CA264_02260 0.65 +0.7
524,525 - CA264_02260 0.65 +2.6
524,650 + CA264_02260 0.70 +0.4
524,695 - CA264_02260 0.72 +1.0
524,695 - CA264_02260 0.72 -0.3
524,695 - CA264_02260 0.72 +0.6
524,695 - CA264_02260 0.72 +0.7
524,701 - CA264_02260 0.73 +0.3
524,923 + CA264_02260 0.82 +0.5
525,107 - CA264_02260 0.89 +1.4
525,167 - +0.5
525,167 - +0.0
525,205 + -0.2
525,240 + -0.2
525,240 + -1.2
525,240 + -0.5
525,241 - +0.1
525,241 - +0.4
525,241 - +0.2
525,241 - -0.2
525,246 + +0.6
525,246 + +1.1
525,247 - +0.8
525,247 - -0.5
525,248 + +0.8
525,248 + +1.8
525,248 + -0.2
525,248 + +0.4
525,248 + -0.2
525,249 - -0.1
525,251 - +3.2
525,303 + -0.6
525,305 + -0.3
525,305 + +0.4
525,306 - +0.0
525,306 - -0.1
525,306 - -0.5
525,306 - -0.2
525,340 + +2.2
525,345 + -0.7
525,553 - CA264_02265 0.30 -0.0
525,554 + CA264_02265 0.30 +0.4
525,703 + CA264_02265 0.51 +2.1
525,747 + CA264_02265 0.57 +0.8
525,764 + CA264_02265 0.59 +2.2
525,905 + CA264_02265 0.79 -0.8
525,957 + CA264_02265 0.86 +0.1
525,958 - CA264_02265 0.86 +0.4
526,010 - +0.6
526,039 - +1.0
526,042 - +1.1
526,071 - +1.9
526,077 - +0.7
526,095 + +1.5
526,105 + +0.6
526,105 + +0.7
526,106 - +0.9
526,140 - +0.3
526,192 + +0.5
526,192 + +1.1
526,233 - +0.9
526,329 - CA264_02270 0.15 -0.4
526,329 - CA264_02270 0.15 +1.1

Or see this region's nucleotide sequence