Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02210

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02205 and CA264_02210 are separated by 73 nucleotidesCA264_02210 and CA264_02215 are separated by 146 nucleotides CA264_02205: CA264_02205 - EamA family transporter, at 507,325 to 508,236 _02205 CA264_02210: CA264_02210 - AI-2E family transporter, at 508,310 to 509,464 _02210 CA264_02215: CA264_02215 - AAA family ATPase, at 509,611 to 510,879 _02215 Position (kb) 508 509 510Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 507.329 kb on - strandat 507.408 kb on - strandat 507.442 kb on + strand, within CA264_02205at 507.443 kb on - strand, within CA264_02205at 507.448 kb on + strand, within CA264_02205at 507.448 kb on + strand, within CA264_02205at 507.448 kb on + strand, within CA264_02205at 507.448 kb on + strand, within CA264_02205at 507.449 kb on - strand, within CA264_02205at 507.449 kb on - strand, within CA264_02205at 507.454 kb on + strand, within CA264_02205at 507.454 kb on + strand, within CA264_02205at 507.456 kb on + strand, within CA264_02205at 507.456 kb on + strand, within CA264_02205at 507.456 kb on + strand, within CA264_02205at 507.457 kb on - strand, within CA264_02205at 507.457 kb on - strand, within CA264_02205at 507.457 kb on - strand, within CA264_02205at 507.457 kb on - strand, within CA264_02205at 507.460 kb on + strand, within CA264_02205at 507.460 kb on + strand, within CA264_02205at 507.460 kb on + strand, within CA264_02205at 507.461 kb on - strand, within CA264_02205at 507.461 kb on - strand, within CA264_02205at 507.461 kb on - strand, within CA264_02205at 507.461 kb on - strand, within CA264_02205at 507.461 kb on - strand, within CA264_02205at 507.482 kb on + strand, within CA264_02205at 507.483 kb on - strand, within CA264_02205at 507.488 kb on + strand, within CA264_02205at 507.543 kb on - strand, within CA264_02205at 507.702 kb on - strand, within CA264_02205at 507.702 kb on - strand, within CA264_02205at 507.722 kb on - strand, within CA264_02205at 507.722 kb on - strand, within CA264_02205at 507.734 kb on + strand, within CA264_02205at 507.961 kb on + strand, within CA264_02205at 507.966 kb on + strand, within CA264_02205at 508.022 kb on - strand, within CA264_02205at 508.173 kb on - strandat 508.222 kb on + strandat 508.222 kb on + strandat 508.222 kb on + strandat 508.222 kb on + strandat 508.256 kb on - strandat 508.309 kb on + strandat 508.310 kb on - strandat 508.310 kb on - strandat 508.344 kb on + strandat 508.427 kb on - strand, within CA264_02210at 508.440 kb on + strand, within CA264_02210at 508.488 kb on + strand, within CA264_02210at 508.498 kb on + strand, within CA264_02210at 508.498 kb on + strand, within CA264_02210at 508.498 kb on + strand, within CA264_02210at 508.499 kb on - strand, within CA264_02210at 508.499 kb on - strand, within CA264_02210at 508.502 kb on - strand, within CA264_02210at 508.561 kb on - strand, within CA264_02210at 508.748 kb on - strand, within CA264_02210at 508.748 kb on - strand, within CA264_02210at 508.780 kb on + strand, within CA264_02210at 508.781 kb on - strand, within CA264_02210at 508.784 kb on + strand, within CA264_02210at 508.784 kb on + strand, within CA264_02210at 508.798 kb on + strand, within CA264_02210at 508.856 kb on + strand, within CA264_02210at 508.856 kb on + strand, within CA264_02210at 508.857 kb on - strand, within CA264_02210at 508.937 kb on + strand, within CA264_02210at 508.938 kb on - strand, within CA264_02210at 508.940 kb on - strand, within CA264_02210at 509.033 kb on + strand, within CA264_02210at 509.034 kb on - strand, within CA264_02210at 509.108 kb on - strand, within CA264_02210at 509.172 kb on + strand, within CA264_02210at 509.173 kb on - strand, within CA264_02210at 509.175 kb on + strand, within CA264_02210at 509.176 kb on - strand, within CA264_02210at 509.176 kb on - strand, within CA264_02210at 509.176 kb on - strand, within CA264_02210at 509.214 kb on + strand, within CA264_02210at 509.317 kb on + strand, within CA264_02210at 509.373 kb on - strandat 509.509 kb on - strandat 509.601 kb on + strandat 509.602 kb on - strandat 509.604 kb on - strandat 509.627 kb on + strandat 509.669 kb on - strandat 509.691 kb on - strandat 509.691 kb on - strandat 509.830 kb on - strand, within CA264_02215at 509.867 kb on + strand, within CA264_02215at 509.867 kb on + strand, within CA264_02215at 509.868 kb on - strand, within CA264_02215at 509.870 kb on + strand, within CA264_02215at 509.871 kb on - strand, within CA264_02215at 510.052 kb on + strand, within CA264_02215at 510.052 kb on + strand, within CA264_02215at 510.052 kb on + strand, within CA264_02215at 510.053 kb on - strand, within CA264_02215at 510.086 kb on + strand, within CA264_02215at 510.087 kb on - strand, within CA264_02215at 510.154 kb on + strand, within CA264_02215at 510.154 kb on + strand, within CA264_02215at 510.245 kb on + strand, within CA264_02215at 510.245 kb on + strand, within CA264_02215at 510.246 kb on - strand, within CA264_02215at 510.298 kb on + strand, within CA264_02215at 510.299 kb on - strand, within CA264_02215at 510.322 kb on + strand, within CA264_02215at 510.322 kb on + strand, within CA264_02215at 510.420 kb on + strand, within CA264_02215at 510.427 kb on - strand, within CA264_02215

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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507,329 - +0.3
507,408 - +0.5
507,442 + CA264_02205 0.13 +0.4
507,443 - CA264_02205 0.13 -0.4
507,448 + CA264_02205 0.13 +0.6
507,448 + CA264_02205 0.13 -0.3
507,448 + CA264_02205 0.13 -0.8
507,448 + CA264_02205 0.13 +0.4
507,449 - CA264_02205 0.14 -0.4
507,449 - CA264_02205 0.14 -1.5
507,454 + CA264_02205 0.14 +0.8
507,454 + CA264_02205 0.14 +1.1
507,456 + CA264_02205 0.14 +1.2
507,456 + CA264_02205 0.14 +0.8
507,456 + CA264_02205 0.14 -0.1
507,457 - CA264_02205 0.14 -1.3
507,457 - CA264_02205 0.14 +0.1
507,457 - CA264_02205 0.14 -0.4
507,457 - CA264_02205 0.14 +0.5
507,460 + CA264_02205 0.15 -0.4
507,460 + CA264_02205 0.15 +0.1
507,460 + CA264_02205 0.15 -0.4
507,461 - CA264_02205 0.15 +0.6
507,461 - CA264_02205 0.15 -0.4
507,461 - CA264_02205 0.15 +0.2
507,461 - CA264_02205 0.15 +0.3
507,461 - CA264_02205 0.15 +0.4
507,482 + CA264_02205 0.17 +0.8
507,483 - CA264_02205 0.17 +3.8
507,488 + CA264_02205 0.18 -0.8
507,543 - CA264_02205 0.24 -0.3
507,702 - CA264_02205 0.41 +0.3
507,702 - CA264_02205 0.41 +0.1
507,722 - CA264_02205 0.44 -1.2
507,722 - CA264_02205 0.44 +0.3
507,734 + CA264_02205 0.45 +0.4
507,961 + CA264_02205 0.70 +0.5
507,966 + CA264_02205 0.70 +0.8
508,022 - CA264_02205 0.76 +0.8
508,173 - +1.2
508,222 + -1.0
508,222 + +1.4
508,222 + +0.4
508,222 + -0.5
508,256 - -0.4
508,309 + +0.2
508,310 - +0.5
508,310 - +0.7
508,344 + +0.5
508,427 - CA264_02210 0.10 +1.0
508,440 + CA264_02210 0.11 -0.4
508,488 + CA264_02210 0.15 +0.4
508,498 + CA264_02210 0.16 +1.7
508,498 + CA264_02210 0.16 -0.8
508,498 + CA264_02210 0.16 +0.4
508,499 - CA264_02210 0.16 -0.3
508,499 - CA264_02210 0.16 +1.8
508,502 - CA264_02210 0.17 -1.2
508,561 - CA264_02210 0.22 +0.2
508,748 - CA264_02210 0.38 -0.8
508,748 - CA264_02210 0.38 +0.8
508,780 + CA264_02210 0.41 +0.4
508,781 - CA264_02210 0.41 +0.4
508,784 + CA264_02210 0.41 -1.8
508,784 + CA264_02210 0.41 -0.2
508,798 + CA264_02210 0.42 +2.4
508,856 + CA264_02210 0.47 +0.9
508,856 + CA264_02210 0.47 +0.8
508,857 - CA264_02210 0.47 +0.1
508,937 + CA264_02210 0.54 +1.2
508,938 - CA264_02210 0.54 +0.8
508,940 - CA264_02210 0.55 +0.1
509,033 + CA264_02210 0.63 +0.8
509,034 - CA264_02210 0.63 +0.3
509,108 - CA264_02210 0.69 +0.4
509,172 + CA264_02210 0.75 -0.9
509,173 - CA264_02210 0.75 +0.8
509,175 + CA264_02210 0.75 -0.2
509,176 - CA264_02210 0.75 -0.6
509,176 - CA264_02210 0.75 +1.1
509,176 - CA264_02210 0.75 +1.2
509,214 + CA264_02210 0.78 +3.0
509,317 + CA264_02210 0.87 +0.1
509,373 - +1.3
509,509 - +1.3
509,601 + +0.6
509,602 - +0.7
509,604 - +0.1
509,627 + +0.7
509,669 - -0.2
509,691 - -1.9
509,691 - -0.1
509,830 - CA264_02215 0.17 +0.0
509,867 + CA264_02215 0.20 -0.1
509,867 + CA264_02215 0.20 +1.2
509,868 - CA264_02215 0.20 +0.2
509,870 + CA264_02215 0.20 -0.2
509,871 - CA264_02215 0.20 +0.1
510,052 + CA264_02215 0.35 +0.1
510,052 + CA264_02215 0.35 +0.5
510,052 + CA264_02215 0.35 +0.8
510,053 - CA264_02215 0.35 +0.5
510,086 + CA264_02215 0.37 +0.2
510,087 - CA264_02215 0.38 +0.0
510,154 + CA264_02215 0.43 +0.8
510,154 + CA264_02215 0.43 +0.4
510,245 + CA264_02215 0.50 +1.3
510,245 + CA264_02215 0.50 +1.2
510,246 - CA264_02215 0.50 +0.4
510,298 + CA264_02215 0.54 +0.5
510,299 - CA264_02215 0.54 -0.4
510,322 + CA264_02215 0.56 +0.8
510,322 + CA264_02215 0.56 +0.2
510,420 + CA264_02215 0.64 -1.2
510,427 - CA264_02215 0.64 -1.5

Or see this region's nucleotide sequence