Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_02025

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_02020 and CA264_02025 are separated by 302 nucleotidesCA264_02025 and CA264_02030 are separated by 22 nucleotidesCA264_02030 and CA264_02035 are separated by 69 nucleotides CA264_02020: CA264_02020 - histidinol-phosphate transaminase, at 464,817 to 466,964 _02020 CA264_02025: CA264_02025 - nitroreductase, at 467,267 to 467,851 _02025 CA264_02030: CA264_02030 - hypothetical protein, at 467,874 to 468,587 _02030 CA264_02035: CA264_02035 - hypothetical protein, at 468,657 to 469,526 _02035 Position (kb) 467 468Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 466.293 kb on + strand, within CA264_02020at 466.328 kb on - strand, within CA264_02020at 466.354 kb on + strand, within CA264_02020at 466.380 kb on + strand, within CA264_02020at 466.380 kb on + strand, within CA264_02020at 466.406 kb on - strand, within CA264_02020at 466.450 kb on + strand, within CA264_02020at 466.450 kb on + strand, within CA264_02020at 466.471 kb on - strand, within CA264_02020at 466.516 kb on + strand, within CA264_02020at 466.525 kb on + strand, within CA264_02020at 466.526 kb on - strand, within CA264_02020at 466.616 kb on - strand, within CA264_02020at 466.675 kb on + strand, within CA264_02020at 466.852 kb on + strandat 466.869 kb on + strandat 466.915 kb on - strandat 466.987 kb on + strandat 466.994 kb on + strandat 467.024 kb on + strandat 467.025 kb on - strandat 467.025 kb on - strandat 467.027 kb on + strandat 467.027 kb on + strandat 467.028 kb on - strandat 467.028 kb on - strandat 467.033 kb on + strandat 467.034 kb on - strandat 467.034 kb on - strandat 467.034 kb on - strandat 467.038 kb on - strandat 467.038 kb on - strandat 467.043 kb on + strandat 467.043 kb on + strandat 467.044 kb on - strandat 467.047 kb on + strandat 467.047 kb on + strandat 467.207 kb on + strandat 467.242 kb on - strandat 467.288 kb on - strandat 467.432 kb on - strand, within CA264_02025at 467.435 kb on + strand, within CA264_02025at 467.436 kb on - strand, within CA264_02025at 467.476 kb on + strand, within CA264_02025at 467.476 kb on + strand, within CA264_02025at 467.549 kb on + strand, within CA264_02025at 467.550 kb on - strand, within CA264_02025at 467.613 kb on + strand, within CA264_02025at 467.647 kb on - strand, within CA264_02025at 467.739 kb on - strand, within CA264_02025at 467.849 kb on + strandat 467.849 kb on + strandat 467.852 kb on + strandat 467.853 kb on - strandat 467.853 kb on - strandat 467.873 kb on + strandat 467.873 kb on + strandat 467.873 kb on + strandat 467.873 kb on + strandat 467.873 kb on + strandat 467.873 kb on + strandat 467.873 kb on + strandat 467.873 kb on + strandat 467.873 kb on + strandat 467.874 kb on - strandat 467.874 kb on - strandat 467.887 kb on + strandat 467.888 kb on - strandat 467.894 kb on + strandat 467.895 kb on - strandat 467.945 kb on + strandat 467.967 kb on + strand, within CA264_02030at 467.967 kb on + strand, within CA264_02030at 467.968 kb on - strand, within CA264_02030at 467.968 kb on - strand, within CA264_02030at 468.411 kb on + strand, within CA264_02030at 468.491 kb on + strand, within CA264_02030at 468.491 kb on + strand, within CA264_02030at 468.503 kb on + strand, within CA264_02030at 468.503 kb on + strand, within CA264_02030at 468.596 kb on - strandat 468.596 kb on - strandat 468.602 kb on - strandat 468.622 kb on + strandat 468.622 kb on + strandat 468.623 kb on - strandat 468.788 kb on - strand, within CA264_02035at 468.794 kb on + strand, within CA264_02035at 468.809 kb on - strand, within CA264_02035

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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466,293 + CA264_02020 0.69 +0.3
466,328 - CA264_02020 0.70 +0.8
466,354 + CA264_02020 0.72 +1.8
466,380 + CA264_02020 0.73 -0.8
466,380 + CA264_02020 0.73 -0.1
466,406 - CA264_02020 0.74 +0.5
466,450 + CA264_02020 0.76 +0.1
466,450 + CA264_02020 0.76 +0.6
466,471 - CA264_02020 0.77 +0.1
466,516 + CA264_02020 0.79 +0.4
466,525 + CA264_02020 0.80 -0.8
466,526 - CA264_02020 0.80 -0.6
466,616 - CA264_02020 0.84 +0.3
466,675 + CA264_02020 0.86 +0.1
466,852 + -1.0
466,869 + -1.3
466,915 - -1.2
466,987 + -2.8
466,994 + -0.2
467,024 + -1.1
467,025 - -1.8
467,025 - -0.2
467,027 + -1.3
467,027 + -1.0
467,028 - -0.9
467,028 - -0.8
467,033 + -0.8
467,034 - -0.8
467,034 - -1.1
467,034 - -0.5
467,038 - -0.7
467,038 - -0.8
467,043 + -0.3
467,043 + -0.3
467,044 - -0.6
467,047 + -1.2
467,047 + -1.5
467,207 + +0.2
467,242 - -1.3
467,288 - -1.5
467,432 - CA264_02025 0.28 +0.3
467,435 + CA264_02025 0.29 -0.9
467,436 - CA264_02025 0.29 -1.6
467,476 + CA264_02025 0.36 -2.1
467,476 + CA264_02025 0.36 -0.2
467,549 + CA264_02025 0.48 -2.1
467,550 - CA264_02025 0.48 -1.7
467,613 + CA264_02025 0.59 -1.5
467,647 - CA264_02025 0.65 -1.0
467,739 - CA264_02025 0.81 -1.1
467,849 + -0.8
467,849 + -0.8
467,852 + -0.8
467,853 - -1.8
467,853 - -2.6
467,873 + -1.8
467,873 + -1.0
467,873 + -2.0
467,873 + -1.3
467,873 + -0.4
467,873 + -0.1
467,873 + -0.0
467,873 + -2.2
467,873 + +0.1
467,874 - +0.8
467,874 - -0.3
467,887 + -0.7
467,888 - -0.2
467,894 + -0.4
467,895 - -1.0
467,945 + -0.6
467,967 + CA264_02030 0.13 -1.2
467,967 + CA264_02030 0.13 -0.8
467,968 - CA264_02030 0.13 -1.9
467,968 - CA264_02030 0.13 -0.2
468,411 + CA264_02030 0.75 -0.6
468,491 + CA264_02030 0.86 -0.3
468,491 + CA264_02030 0.86 -1.5
468,503 + CA264_02030 0.88 -2.0
468,503 + CA264_02030 0.88 +0.8
468,596 - -1.2
468,596 - -2.4
468,602 - -1.1
468,622 + +0.2
468,622 + +1.5
468,623 - -0.4
468,788 - CA264_02035 0.15 +0.1
468,794 + CA264_02035 0.16 +0.8
468,809 - CA264_02035 0.17 -0.1

Or see this region's nucleotide sequence