Experiment: m.b. Carbenicillin 0.0015 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA264_02020 and CA264_02025 are separated by 302 nucleotides CA264_02025 and CA264_02030 are separated by 22 nucleotides CA264_02030 and CA264_02035 are separated by 69 nucleotides
CA264_02020: CA264_02020 - histidinol-phosphate transaminase, at 464,817 to 466,964
_02020
CA264_02025: CA264_02025 - nitroreductase, at 467,267 to 467,851
_02025
CA264_02030: CA264_02030 - hypothetical protein, at 467,874 to 468,587
_02030
CA264_02035: CA264_02035 - hypothetical protein, at 468,657 to 469,526
_02035
Position (kb)
467
468 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 466.293 kb on + strand, within CA264_02020 at 466.328 kb on - strand, within CA264_02020 at 466.354 kb on + strand, within CA264_02020 at 466.380 kb on + strand, within CA264_02020 at 466.380 kb on + strand, within CA264_02020 at 466.406 kb on - strand, within CA264_02020 at 466.450 kb on + strand, within CA264_02020 at 466.450 kb on + strand, within CA264_02020 at 466.471 kb on - strand, within CA264_02020 at 466.516 kb on + strand, within CA264_02020 at 466.525 kb on + strand, within CA264_02020 at 466.526 kb on - strand, within CA264_02020 at 466.616 kb on - strand, within CA264_02020 at 466.675 kb on + strand, within CA264_02020 at 466.852 kb on + strand at 466.869 kb on + strand at 466.915 kb on - strand at 466.987 kb on + strand at 466.994 kb on + strand at 467.024 kb on + strand at 467.025 kb on - strand at 467.025 kb on - strand at 467.027 kb on + strand at 467.027 kb on + strand at 467.028 kb on - strand at 467.028 kb on - strand at 467.033 kb on + strand at 467.034 kb on - strand at 467.034 kb on - strand at 467.034 kb on - strand at 467.038 kb on - strand at 467.038 kb on - strand at 467.043 kb on + strand at 467.043 kb on + strand at 467.044 kb on - strand at 467.047 kb on + strand at 467.047 kb on + strand at 467.207 kb on + strand at 467.242 kb on - strand at 467.288 kb on - strand at 467.432 kb on - strand, within CA264_02025 at 467.435 kb on + strand, within CA264_02025 at 467.436 kb on - strand, within CA264_02025 at 467.476 kb on + strand, within CA264_02025 at 467.476 kb on + strand, within CA264_02025 at 467.549 kb on + strand, within CA264_02025 at 467.550 kb on - strand, within CA264_02025 at 467.613 kb on + strand, within CA264_02025 at 467.647 kb on - strand, within CA264_02025 at 467.739 kb on - strand, within CA264_02025 at 467.849 kb on + strand at 467.849 kb on + strand at 467.852 kb on + strand at 467.853 kb on - strand at 467.853 kb on - strand at 467.873 kb on + strand at 467.873 kb on + strand at 467.873 kb on + strand at 467.873 kb on + strand at 467.873 kb on + strand at 467.873 kb on + strand at 467.873 kb on + strand at 467.873 kb on + strand at 467.873 kb on + strand at 467.874 kb on - strand at 467.874 kb on - strand at 467.887 kb on + strand at 467.888 kb on - strand at 467.894 kb on + strand at 467.895 kb on - strand at 467.945 kb on + strand at 467.967 kb on + strand, within CA264_02030 at 467.967 kb on + strand, within CA264_02030 at 467.968 kb on - strand, within CA264_02030 at 467.968 kb on - strand, within CA264_02030 at 468.411 kb on + strand, within CA264_02030 at 468.491 kb on + strand, within CA264_02030 at 468.491 kb on + strand, within CA264_02030 at 468.503 kb on + strand, within CA264_02030 at 468.503 kb on + strand, within CA264_02030 at 468.596 kb on - strand at 468.596 kb on - strand at 468.602 kb on - strand at 468.622 kb on + strand at 468.622 kb on + strand at 468.623 kb on - strand at 468.788 kb on - strand, within CA264_02035 at 468.794 kb on + strand, within CA264_02035 at 468.809 kb on - strand, within CA264_02035
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml remove 466,293 + CA264_02020 0.69 +0.3 466,328 - CA264_02020 0.70 +0.8 466,354 + CA264_02020 0.72 +1.8 466,380 + CA264_02020 0.73 -0.8 466,380 + CA264_02020 0.73 -0.1 466,406 - CA264_02020 0.74 +0.5 466,450 + CA264_02020 0.76 +0.1 466,450 + CA264_02020 0.76 +0.6 466,471 - CA264_02020 0.77 +0.1 466,516 + CA264_02020 0.79 +0.4 466,525 + CA264_02020 0.80 -0.8 466,526 - CA264_02020 0.80 -0.6 466,616 - CA264_02020 0.84 +0.3 466,675 + CA264_02020 0.86 +0.1 466,852 + -1.0 466,869 + -1.3 466,915 - -1.2 466,987 + -2.8 466,994 + -0.2 467,024 + -1.1 467,025 - -1.8 467,025 - -0.2 467,027 + -1.3 467,027 + -1.0 467,028 - -0.9 467,028 - -0.8 467,033 + -0.8 467,034 - -0.8 467,034 - -1.1 467,034 - -0.5 467,038 - -0.7 467,038 - -0.8 467,043 + -0.3 467,043 + -0.3 467,044 - -0.6 467,047 + -1.2 467,047 + -1.5 467,207 + +0.2 467,242 - -1.3 467,288 - -1.5 467,432 - CA264_02025 0.28 +0.3 467,435 + CA264_02025 0.29 -0.9 467,436 - CA264_02025 0.29 -1.6 467,476 + CA264_02025 0.36 -2.1 467,476 + CA264_02025 0.36 -0.2 467,549 + CA264_02025 0.48 -2.1 467,550 - CA264_02025 0.48 -1.7 467,613 + CA264_02025 0.59 -1.5 467,647 - CA264_02025 0.65 -1.0 467,739 - CA264_02025 0.81 -1.1 467,849 + -0.8 467,849 + -0.8 467,852 + -0.8 467,853 - -1.8 467,853 - -2.6 467,873 + -1.8 467,873 + -1.0 467,873 + -2.0 467,873 + -1.3 467,873 + -0.4 467,873 + -0.1 467,873 + -0.0 467,873 + -2.2 467,873 + +0.1 467,874 - +0.8 467,874 - -0.3 467,887 + -0.7 467,888 - -0.2 467,894 + -0.4 467,895 - -1.0 467,945 + -0.6 467,967 + CA264_02030 0.13 -1.2 467,967 + CA264_02030 0.13 -0.8 467,968 - CA264_02030 0.13 -1.9 467,968 - CA264_02030 0.13 -0.2 468,411 + CA264_02030 0.75 -0.6 468,491 + CA264_02030 0.86 -0.3 468,491 + CA264_02030 0.86 -1.5 468,503 + CA264_02030 0.88 -2.0 468,503 + CA264_02030 0.88 +0.8 468,596 - -1.2 468,596 - -2.4 468,602 - -1.1 468,622 + +0.2 468,622 + +1.5 468,623 - -0.4 468,788 - CA264_02035 0.15 +0.1 468,794 + CA264_02035 0.16 +0.8 468,809 - CA264_02035 0.17 -0.1
Or see this region's nucleotide sequence