Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01950

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01945 and CA264_01950 are separated by 97 nucleotidesCA264_01950 and CA264_01955 are separated by 111 nucleotidesCA264_01955 and CA264_01960 overlap by 1 nucleotides CA264_01945: CA264_01945 - hypothetical protein, at 450,948 to 451,724 _01945 CA264_01950: CA264_01950 - PhoH family protein, at 451,822 to 452,859 _01950 CA264_01955: CA264_01955 - N-acetyltransferase, at 452,971 to 453,399 _01955 CA264_01960: CA264_01960 - competence protein ComEC, at 453,399 to 455,510 _01960 Position (kb) 451 452 453Strain fitness (log2 ratio) -2 -1 0 1 2at 450.867 kb on + strandat 450.868 kb on - strandat 450.900 kb on + strandat 450.901 kb on - strandat 450.910 kb on + strandat 450.911 kb on - strandat 451.057 kb on + strand, within CA264_01945at 451.402 kb on - strand, within CA264_01945at 451.421 kb on - strand, within CA264_01945at 451.462 kb on + strand, within CA264_01945at 451.490 kb on - strand, within CA264_01945at 451.502 kb on + strand, within CA264_01945at 451.577 kb on - strand, within CA264_01945at 451.597 kb on + strand, within CA264_01945at 451.689 kb on - strandat 451.717 kb on - strandat 451.717 kb on - strandat 451.728 kb on - strandat 451.735 kb on - strandat 451.800 kb on + strandat 451.807 kb on + strandat 451.851 kb on + strandat 451.851 kb on + strandat 451.851 kb on + strandat 451.851 kb on + strandat 451.854 kb on - strandat 451.929 kb on + strand, within CA264_01950at 451.929 kb on + strand, within CA264_01950at 451.929 kb on + strand, within CA264_01950at 451.929 kb on + strand, within CA264_01950at 451.942 kb on - strand, within CA264_01950at 452.022 kb on + strand, within CA264_01950at 452.023 kb on - strand, within CA264_01950at 452.037 kb on + strand, within CA264_01950at 452.043 kb on + strand, within CA264_01950at 452.044 kb on - strand, within CA264_01950at 452.051 kb on + strand, within CA264_01950at 452.051 kb on + strand, within CA264_01950at 452.055 kb on + strand, within CA264_01950at 452.055 kb on + strand, within CA264_01950at 452.056 kb on - strand, within CA264_01950at 452.060 kb on - strand, within CA264_01950at 452.142 kb on + strand, within CA264_01950at 452.300 kb on + strand, within CA264_01950at 452.390 kb on - strand, within CA264_01950at 452.431 kb on + strand, within CA264_01950at 452.435 kb on - strand, within CA264_01950at 452.473 kb on + strand, within CA264_01950at 452.819 kb on + strandat 452.858 kb on - strandat 452.907 kb on - strandat 452.908 kb on + strandat 452.908 kb on + strandat 452.909 kb on - strandat 452.915 kb on + strandat 452.915 kb on + strandat 452.916 kb on - strandat 452.916 kb on - strandat 452.960 kb on + strandat 452.961 kb on - strandat 452.981 kb on + strandat 453.076 kb on + strand, within CA264_01955at 453.077 kb on - strand, within CA264_01955at 453.106 kb on + strand, within CA264_01955at 453.246 kb on - strand, within CA264_01955at 453.255 kb on - strand, within CA264_01955at 453.309 kb on - strand, within CA264_01955at 453.379 kb on - strandat 453.465 kb on + strandat 453.558 kb on + strandat 453.559 kb on - strandat 453.560 kb on + strandat 453.560 kb on + strandat 453.560 kb on + strandat 453.561 kb on - strandat 453.592 kb on + strandat 453.593 kb on - strandat 453.593 kb on - strandat 453.593 kb on - strandat 453.605 kb on + strandat 453.606 kb on - strandat 453.696 kb on + strand, within CA264_01960at 453.696 kb on + strand, within CA264_01960at 453.696 kb on + strand, within CA264_01960at 453.697 kb on - strand, within CA264_01960at 453.699 kb on + strand, within CA264_01960at 453.699 kb on + strand, within CA264_01960at 453.699 kb on + strand, within CA264_01960at 453.699 kb on + strand, within CA264_01960at 453.699 kb on + strand, within CA264_01960at 453.699 kb on - strand, within CA264_01960at 453.700 kb on - strand, within CA264_01960at 453.700 kb on - strand, within CA264_01960at 453.701 kb on + strand, within CA264_01960at 453.701 kb on + strand, within CA264_01960at 453.702 kb on - strand, within CA264_01960at 453.720 kb on + strand, within CA264_01960at 453.778 kb on + strand, within CA264_01960at 453.812 kb on - strand, within CA264_01960at 453.812 kb on - strand, within CA264_01960at 453.812 kb on - strand, within CA264_01960at 453.859 kb on - strand, within CA264_01960at 453.859 kb on - strand, within CA264_01960at 453.859 kb on - strand, within CA264_01960

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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450,867 + -0.0
450,868 - -0.3
450,900 + +1.2
450,901 - -0.1
450,910 + +0.1
450,911 - -0.4
451,057 + CA264_01945 0.14 +0.7
451,402 - CA264_01945 0.58 +0.4
451,421 - CA264_01945 0.61 +1.6
451,462 + CA264_01945 0.66 -0.4
451,490 - CA264_01945 0.70 -1.2
451,502 + CA264_01945 0.71 -0.6
451,577 - CA264_01945 0.81 +0.5
451,597 + CA264_01945 0.84 +0.2
451,689 - -1.3
451,717 - +0.2
451,717 - -0.4
451,728 - -0.5
451,735 - -0.1
451,800 + +1.0
451,807 + +0.8
451,851 + +0.1
451,851 + +1.0
451,851 + +0.6
451,851 + +0.9
451,854 - -0.1
451,929 + CA264_01950 0.10 +0.1
451,929 + CA264_01950 0.10 -2.2
451,929 + CA264_01950 0.10 -1.0
451,929 + CA264_01950 0.10 -0.1
451,942 - CA264_01950 0.12 +1.1
452,022 + CA264_01950 0.19 +0.5
452,023 - CA264_01950 0.19 -0.2
452,037 + CA264_01950 0.21 -0.5
452,043 + CA264_01950 0.21 +1.5
452,044 - CA264_01950 0.21 +0.3
452,051 + CA264_01950 0.22 -0.5
452,051 + CA264_01950 0.22 +0.5
452,055 + CA264_01950 0.22 +1.0
452,055 + CA264_01950 0.22 -0.7
452,056 - CA264_01950 0.23 +0.8
452,060 - CA264_01950 0.23 +0.4
452,142 + CA264_01950 0.31 +0.7
452,300 + CA264_01950 0.46 +0.6
452,390 - CA264_01950 0.55 +0.4
452,431 + CA264_01950 0.59 +1.8
452,435 - CA264_01950 0.59 +0.8
452,473 + CA264_01950 0.63 +1.5
452,819 + -0.2
452,858 - -0.4
452,907 - -1.2
452,908 + +0.2
452,908 + +0.7
452,909 - +0.5
452,915 + -0.0
452,915 + -0.0
452,916 - -0.5
452,916 - -0.4
452,960 + +0.2
452,961 - +0.5
452,981 + +0.1
453,076 + CA264_01955 0.24 -0.2
453,077 - CA264_01955 0.25 -0.8
453,106 + CA264_01955 0.31 -0.6
453,246 - CA264_01955 0.64 +0.8
453,255 - CA264_01955 0.66 -0.9
453,309 - CA264_01955 0.79 -0.2
453,379 - -0.2
453,465 + -0.2
453,558 + -0.2
453,559 - -0.2
453,560 + -0.2
453,560 + +0.2
453,560 + -0.3
453,561 - +1.8
453,592 + -0.2
453,593 - +0.3
453,593 - +0.0
453,593 - -0.4
453,605 + -0.4
453,606 - +0.6
453,696 + CA264_01960 0.14 +1.4
453,696 + CA264_01960 0.14 -0.6
453,696 + CA264_01960 0.14 +0.1
453,697 - CA264_01960 0.14 +0.1
453,699 + CA264_01960 0.14 -0.8
453,699 + CA264_01960 0.14 -0.5
453,699 + CA264_01960 0.14 -0.5
453,699 + CA264_01960 0.14 -0.5
453,699 + CA264_01960 0.14 +0.4
453,699 - CA264_01960 0.14 +0.6
453,700 - CA264_01960 0.14 +0.5
453,700 - CA264_01960 0.14 +1.2
453,701 + CA264_01960 0.14 -0.1
453,701 + CA264_01960 0.14 -0.4
453,702 - CA264_01960 0.14 +0.4
453,720 + CA264_01960 0.15 -1.3
453,778 + CA264_01960 0.18 -1.8
453,812 - CA264_01960 0.20 -1.9
453,812 - CA264_01960 0.20 +1.0
453,812 - CA264_01960 0.20 -0.1
453,859 - CA264_01960 0.22 +0.6
453,859 - CA264_01960 0.22 +0.8
453,859 - CA264_01960 0.22 -0.2

Or see this region's nucleotide sequence