Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_01780

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_01775 and CA264_01780 are separated by 72 nucleotidesCA264_01780 and CA264_01785 are separated by 45 nucleotidesCA264_01785 and CA264_01790 are separated by 33 nucleotidesCA264_01790 and CA264_01795 are separated by 154 nucleotides CA264_01775: CA264_01775 - hypothetical protein, at 420,928 to 421,665 _01775 CA264_01780: CA264_01780 - hypothetical protein, at 421,738 to 422,310 _01780 CA264_01785: CA264_01785 - hypothetical protein, at 422,356 to 422,796 _01785 CA264_01790: CA264_01790 - hypothetical protein, at 422,830 to 423,120 _01790 CA264_01795: CA264_01795 - hypothetical protein, at 423,275 to 423,592 _01795 Position (kb) 421 422 423Strain fitness (log2 ratio) -2 -1 0 1 2at 420.746 kb on + strandat 420.757 kb on - strandat 420.757 kb on - strandat 420.757 kb on - strandat 420.758 kb on + strandat 420.836 kb on - strandat 420.838 kb on + strandat 420.838 kb on + strandat 420.839 kb on - strandat 420.839 kb on - strandat 420.839 kb on - strandat 420.839 kb on - strandat 420.841 kb on - strandat 420.886 kb on + strandat 420.923 kb on - strandat 421.054 kb on + strand, within CA264_01775at 421.055 kb on - strand, within CA264_01775at 421.146 kb on + strand, within CA264_01775at 421.150 kb on + strand, within CA264_01775at 421.213 kb on + strand, within CA264_01775at 421.241 kb on - strand, within CA264_01775at 421.241 kb on - strand, within CA264_01775at 421.262 kb on - strand, within CA264_01775at 421.262 kb on - strand, within CA264_01775at 421.298 kb on - strand, within CA264_01775at 421.335 kb on + strand, within CA264_01775at 421.345 kb on + strand, within CA264_01775at 421.348 kb on + strand, within CA264_01775at 421.349 kb on - strand, within CA264_01775at 421.349 kb on - strand, within CA264_01775at 421.444 kb on + strand, within CA264_01775at 421.445 kb on - strand, within CA264_01775at 421.519 kb on + strand, within CA264_01775at 421.537 kb on + strand, within CA264_01775at 421.538 kb on - strand, within CA264_01775at 421.542 kb on - strand, within CA264_01775at 421.558 kb on + strand, within CA264_01775at 421.558 kb on + strand, within CA264_01775at 421.632 kb on + strandat 421.791 kb on + strandat 421.801 kb on - strand, within CA264_01780at 421.810 kb on - strand, within CA264_01780at 421.904 kb on + strand, within CA264_01780at 421.905 kb on - strand, within CA264_01780at 421.907 kb on - strand, within CA264_01780at 421.938 kb on - strand, within CA264_01780at 421.938 kb on - strand, within CA264_01780at 421.938 kb on - strand, within CA264_01780at 422.056 kb on + strand, within CA264_01780at 422.056 kb on + strand, within CA264_01780at 422.189 kb on + strand, within CA264_01780at 422.189 kb on + strand, within CA264_01780at 422.189 kb on + strand, within CA264_01780at 422.189 kb on + strand, within CA264_01780at 422.190 kb on - strand, within CA264_01780at 422.193 kb on + strand, within CA264_01780at 422.194 kb on - strand, within CA264_01780at 422.306 kb on - strandat 422.357 kb on + strandat 422.409 kb on - strand, within CA264_01785at 422.409 kb on - strand, within CA264_01785at 422.425 kb on + strand, within CA264_01785at 422.466 kb on - strand, within CA264_01785at 422.640 kb on + strand, within CA264_01785at 422.652 kb on - strand, within CA264_01785at 422.690 kb on - strand, within CA264_01785at 422.690 kb on - strand, within CA264_01785at 422.695 kb on + strand, within CA264_01785at 422.695 kb on + strand, within CA264_01785at 422.696 kb on - strand, within CA264_01785at 422.696 kb on - strand, within CA264_01785at 422.732 kb on - strand, within CA264_01785at 422.790 kb on + strandat 422.829 kb on + strandat 422.918 kb on + strand, within CA264_01790at 422.978 kb on + strand, within CA264_01790at 423.136 kb on + strandat 423.137 kb on - strandat 423.142 kb on + strandat 423.142 kb on + strandat 423.143 kb on - strandat 423.143 kb on - strandat 423.161 kb on + strandat 423.177 kb on + strandat 423.178 kb on - strandat 423.254 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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420,746 + +0.8
420,757 - +0.8
420,757 - -0.3
420,757 - -0.2
420,758 + +1.0
420,836 - +0.8
420,838 + -0.2
420,838 + +0.4
420,839 - -0.3
420,839 - -0.4
420,839 - -0.5
420,839 - -0.7
420,841 - +0.5
420,886 + -0.8
420,923 - +0.8
421,054 + CA264_01775 0.17 -0.1
421,055 - CA264_01775 0.17 -0.8
421,146 + CA264_01775 0.30 -0.2
421,150 + CA264_01775 0.30 +1.8
421,213 + CA264_01775 0.39 -0.5
421,241 - CA264_01775 0.42 +0.1
421,241 - CA264_01775 0.42 +1.1
421,262 - CA264_01775 0.45 +0.1
421,262 - CA264_01775 0.45 +0.1
421,298 - CA264_01775 0.50 -1.1
421,335 + CA264_01775 0.55 -0.5
421,345 + CA264_01775 0.57 +0.5
421,348 + CA264_01775 0.57 +0.0
421,349 - CA264_01775 0.57 -1.1
421,349 - CA264_01775 0.57 -0.4
421,444 + CA264_01775 0.70 -0.1
421,445 - CA264_01775 0.70 +0.4
421,519 + CA264_01775 0.80 +0.4
421,537 + CA264_01775 0.83 -0.9
421,538 - CA264_01775 0.83 -0.6
421,542 - CA264_01775 0.83 +0.8
421,558 + CA264_01775 0.85 -1.2
421,558 + CA264_01775 0.85 +0.8
421,632 + +0.1
421,791 + +0.2
421,801 - CA264_01780 0.11 +0.4
421,810 - CA264_01780 0.13 -0.2
421,904 + CA264_01780 0.29 +1.0
421,905 - CA264_01780 0.29 -0.9
421,907 - CA264_01780 0.29 -0.2
421,938 - CA264_01780 0.35 +1.1
421,938 - CA264_01780 0.35 -0.4
421,938 - CA264_01780 0.35 -0.0
422,056 + CA264_01780 0.55 +0.1
422,056 + CA264_01780 0.55 +1.0
422,189 + CA264_01780 0.79 -0.2
422,189 + CA264_01780 0.79 +0.3
422,189 + CA264_01780 0.79 +1.8
422,189 + CA264_01780 0.79 -0.2
422,190 - CA264_01780 0.79 -1.3
422,193 + CA264_01780 0.79 +0.6
422,194 - CA264_01780 0.80 +0.1
422,306 - -0.7
422,357 + +0.5
422,409 - CA264_01785 0.12 -0.8
422,409 - CA264_01785 0.12 -0.0
422,425 + CA264_01785 0.16 -1.0
422,466 - CA264_01785 0.25 -0.2
422,640 + CA264_01785 0.64 +0.6
422,652 - CA264_01785 0.67 -0.9
422,690 - CA264_01785 0.76 -1.4
422,690 - CA264_01785 0.76 +0.1
422,695 + CA264_01785 0.77 +0.0
422,695 + CA264_01785 0.77 -2.2
422,696 - CA264_01785 0.77 +0.0
422,696 - CA264_01785 0.77 -1.2
422,732 - CA264_01785 0.85 -1.5
422,790 + +0.0
422,829 + -2.0
422,918 + CA264_01790 0.30 -0.3
422,978 + CA264_01790 0.51 -0.8
423,136 + -1.5
423,137 - +0.3
423,142 + -0.8
423,142 + -0.6
423,143 - -1.2
423,143 - -0.8
423,161 + +0.0
423,177 + -0.0
423,178 - -0.9
423,254 - -0.2

Or see this region's nucleotide sequence