Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00335

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00330 and CA264_00335 overlap by 23 nucleotidesCA264_00335 and CA264_00340 are separated by 303 nucleotides CA264_00330: CA264_00330 - hypothetical protein, at 76,194 to 76,925 _00330 CA264_00335: CA264_00335 - dicarboxylate/amino acid:cation symporter, at 76,903 to 78,207 _00335 CA264_00340: CA264_00340 - ZIP family zinc transporter, at 78,511 to 79,260 _00340 Position (kb) 76 77 78 79Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 76.024 kb on - strandat 76.167 kb on - strandat 76.207 kb on + strandat 76.208 kb on - strandat 76.208 kb on - strandat 76.211 kb on + strandat 76.211 kb on + strandat 76.211 kb on + strandat 76.326 kb on + strand, within CA264_00330at 76.327 kb on - strand, within CA264_00330at 76.419 kb on + strand, within CA264_00330at 76.424 kb on + strand, within CA264_00330at 76.564 kb on - strand, within CA264_00330at 76.582 kb on - strand, within CA264_00330at 76.708 kb on - strand, within CA264_00330at 76.723 kb on + strand, within CA264_00330at 76.821 kb on - strand, within CA264_00330at 76.822 kb on + strand, within CA264_00330at 76.823 kb on - strand, within CA264_00330at 76.823 kb on - strand, within CA264_00330at 76.826 kb on + strand, within CA264_00330at 76.827 kb on - strand, within CA264_00330at 76.897 kb on + strandat 76.898 kb on - strandat 76.899 kb on + strandat 76.900 kb on - strandat 76.900 kb on - strandat 76.900 kb on - strandat 76.905 kb on - strandat 76.905 kb on - strandat 76.905 kb on - strandat 76.905 kb on - strandat 76.905 kb on - strandat 76.906 kb on + strandat 77.032 kb on + strandat 77.032 kb on + strandat 77.074 kb on + strand, within CA264_00335at 77.222 kb on + strand, within CA264_00335at 77.860 kb on - strand, within CA264_00335at 78.063 kb on + strand, within CA264_00335at 78.072 kb on + strand, within CA264_00335at 78.131 kb on + strandat 78.207 kb on + strandat 78.208 kb on - strandat 78.214 kb on + strandat 78.240 kb on - strandat 78.259 kb on + strandat 78.261 kb on + strandat 78.261 kb on + strandat 78.264 kb on + strandat 78.264 kb on + strandat 78.265 kb on - strandat 78.272 kb on + strandat 78.278 kb on + strandat 78.329 kb on + strandat 78.330 kb on - strandat 78.330 kb on - strandat 78.363 kb on + strandat 78.363 kb on + strandat 78.363 kb on + strandat 78.482 kb on + strandat 78.621 kb on + strand, within CA264_00340at 78.885 kb on + strand, within CA264_00340at 78.900 kb on + strand, within CA264_00340at 78.900 kb on + strand, within CA264_00340at 78.901 kb on - strand, within CA264_00340at 79.011 kb on + strand, within CA264_00340at 79.019 kb on - strand, within CA264_00340at 79.019 kb on - strand, within CA264_00340at 79.019 kb on - strand, within CA264_00340at 79.041 kb on + strand, within CA264_00340at 79.050 kb on + strand, within CA264_00340at 79.051 kb on - strand, within CA264_00340at 79.051 kb on - strand, within CA264_00340at 79.051 kb on - strand, within CA264_00340at 79.053 kb on - strand, within CA264_00340at 79.078 kb on + strand, within CA264_00340at 79.079 kb on - strand, within CA264_00340at 79.079 kb on - strand, within CA264_00340at 79.081 kb on - strand, within CA264_00340at 79.090 kb on - strand, within CA264_00340at 79.198 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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76,024 - -0.3
76,167 - -0.5
76,207 + +0.2
76,208 - +0.1
76,208 - +0.1
76,211 + -0.3
76,211 + -0.8
76,211 + -0.8
76,326 + CA264_00330 0.18 +0.2
76,327 - CA264_00330 0.18 -0.6
76,419 + CA264_00330 0.31 -0.6
76,424 + CA264_00330 0.31 -1.3
76,564 - CA264_00330 0.51 -0.7
76,582 - CA264_00330 0.53 +0.5
76,708 - CA264_00330 0.70 -0.2
76,723 + CA264_00330 0.72 +0.3
76,821 - CA264_00330 0.86 +0.8
76,822 + CA264_00330 0.86 -1.8
76,823 - CA264_00330 0.86 +0.8
76,823 - CA264_00330 0.86 +0.1
76,826 + CA264_00330 0.86 -0.6
76,827 - CA264_00330 0.86 -2.5
76,897 + -0.5
76,898 - +0.1
76,899 + -0.9
76,900 - -1.1
76,900 - -0.4
76,900 - -0.3
76,905 - +0.7
76,905 - +0.8
76,905 - -1.0
76,905 - -0.2
76,905 - -0.2
76,906 + +1.2
77,032 + -0.5
77,032 + -1.3
77,074 + CA264_00335 0.13 -0.2
77,222 + CA264_00335 0.24 -0.7
77,860 - CA264_00335 0.73 -0.4
78,063 + CA264_00335 0.89 -0.2
78,072 + CA264_00335 0.90 -1.2
78,131 + +0.6
78,207 + -3.6
78,208 - -0.8
78,214 + +0.3
78,240 - -2.2
78,259 + -0.4
78,261 + -1.8
78,261 + -1.2
78,264 + -2.6
78,264 + -1.5
78,265 - -3.0
78,272 + -2.6
78,278 + -2.9
78,329 + -0.2
78,330 - -1.2
78,330 - -3.5
78,363 + -3.8
78,363 + -3.6
78,363 + -3.8
78,482 + -3.8
78,621 + CA264_00340 0.15 -1.2
78,885 + CA264_00340 0.50 -1.5
78,900 + CA264_00340 0.52 -0.6
78,900 + CA264_00340 0.52 -1.5
78,901 - CA264_00340 0.52 -2.2
79,011 + CA264_00340 0.67 -1.3
79,019 - CA264_00340 0.68 -2.2
79,019 - CA264_00340 0.68 -3.1
79,019 - CA264_00340 0.68 -3.1
79,041 + CA264_00340 0.71 +1.4
79,050 + CA264_00340 0.72 +0.8
79,051 - CA264_00340 0.72 -2.5
79,051 - CA264_00340 0.72 -3.6
79,051 - CA264_00340 0.72 -1.3
79,053 - CA264_00340 0.72 -1.2
79,078 + CA264_00340 0.76 +0.6
79,079 - CA264_00340 0.76 -0.8
79,079 - CA264_00340 0.76 +0.8
79,081 - CA264_00340 0.76 -3.7
79,090 - CA264_00340 0.77 +0.8
79,198 - -1.3

Or see this region's nucleotide sequence