Strain Fitness in Pontibacter actiniarum KMM 6156, DSM 19842 around CA264_00275

Experiment: m.b. Carbenicillin 0.0015 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCA264_00270 and CA264_00275 are separated by 105 nucleotidesCA264_00275 and CA264_00280 are separated by 8 nucleotides CA264_00270: CA264_00270 - hypothetical protein, at 65,123 to 66,043 _00270 CA264_00275: CA264_00275 - hypothetical protein, at 66,149 to 66,562 _00275 CA264_00280: CA264_00280 - DegT/DnrJ/EryC1/StrS aminotransferase, at 66,571 to 67,683 _00280 Position (kb) 66 67Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 65.159 kb on - strandat 65.162 kb on + strandat 65.258 kb on - strand, within CA264_00270at 65.258 kb on - strand, within CA264_00270at 65.425 kb on + strand, within CA264_00270at 65.470 kb on + strand, within CA264_00270at 65.470 kb on + strand, within CA264_00270at 65.514 kb on + strand, within CA264_00270at 65.514 kb on + strand, within CA264_00270at 65.674 kb on + strand, within CA264_00270at 65.676 kb on + strand, within CA264_00270at 65.676 kb on + strand, within CA264_00270at 65.677 kb on - strand, within CA264_00270at 65.692 kb on - strand, within CA264_00270at 65.850 kb on + strand, within CA264_00270at 65.851 kb on - strand, within CA264_00270at 65.851 kb on - strand, within CA264_00270at 65.854 kb on - strand, within CA264_00270at 65.938 kb on - strand, within CA264_00270at 65.938 kb on - strand, within CA264_00270at 65.974 kb on - strandat 65.990 kb on - strandat 66.001 kb on + strandat 66.033 kb on + strandat 66.036 kb on + strandat 66.036 kb on + strandat 66.037 kb on - strandat 66.037 kb on - strandat 66.038 kb on + strandat 66.038 kb on + strandat 66.094 kb on + strandat 66.100 kb on + strandat 66.101 kb on - strandat 66.101 kb on - strandat 66.206 kb on + strand, within CA264_00275at 66.249 kb on + strand, within CA264_00275at 66.327 kb on + strand, within CA264_00275at 66.349 kb on + strand, within CA264_00275at 66.349 kb on + strand, within CA264_00275at 66.350 kb on - strand, within CA264_00275at 66.352 kb on - strand, within CA264_00275at 66.419 kb on + strand, within CA264_00275at 66.419 kb on + strand, within CA264_00275at 66.419 kb on + strand, within CA264_00275at 66.420 kb on - strand, within CA264_00275at 66.420 kb on - strand, within CA264_00275at 66.423 kb on + strand, within CA264_00275at 66.510 kb on - strand, within CA264_00275at 66.510 kb on - strand, within CA264_00275at 66.718 kb on - strand, within CA264_00280at 66.719 kb on + strand, within CA264_00280at 66.754 kb on + strand, within CA264_00280at 66.776 kb on + strand, within CA264_00280at 66.895 kb on + strand, within CA264_00280at 66.895 kb on + strand, within CA264_00280at 66.896 kb on - strand, within CA264_00280at 66.901 kb on + strand, within CA264_00280at 66.902 kb on - strand, within CA264_00280at 66.902 kb on - strand, within CA264_00280at 67.145 kb on + strand, within CA264_00280at 67.166 kb on + strand, within CA264_00280at 67.214 kb on - strand, within CA264_00280at 67.381 kb on + strand, within CA264_00280at 67.420 kb on + strand, within CA264_00280at 67.420 kb on + strand, within CA264_00280at 67.420 kb on + strand, within CA264_00280at 67.421 kb on - strand, within CA264_00280at 67.421 kb on - strand, within CA264_00280at 67.421 kb on - strand, within CA264_00280at 67.421 kb on - strand, within CA264_00280at 67.425 kb on + strand, within CA264_00280at 67.431 kb on + strand, within CA264_00280at 67.466 kb on + strand, within CA264_00280at 67.466 kb on + strand, within CA264_00280at 67.466 kb on + strand, within CA264_00280at 67.467 kb on - strand, within CA264_00280at 67.467 kb on - strand, within CA264_00280at 67.467 kb on - strand, within CA264_00280at 67.469 kb on - strand, within CA264_00280at 67.469 kb on - strand, within CA264_00280at 67.504 kb on + strand, within CA264_00280at 67.537 kb on - strand, within CA264_00280at 67.550 kb on - strand, within CA264_00280at 67.552 kb on - strand, within CA264_00280

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.0015 mg/ml
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65,159 - -0.8
65,162 + -0.2
65,258 - CA264_00270 0.15 -0.2
65,258 - CA264_00270 0.15 +0.8
65,425 + CA264_00270 0.33 +0.2
65,470 + CA264_00270 0.38 -1.0
65,470 + CA264_00270 0.38 -0.6
65,514 + CA264_00270 0.42 -0.2
65,514 + CA264_00270 0.42 -1.8
65,674 + CA264_00270 0.60 +0.2
65,676 + CA264_00270 0.60 -0.8
65,676 + CA264_00270 0.60 -0.5
65,677 - CA264_00270 0.60 +1.2
65,692 - CA264_00270 0.62 -0.4
65,850 + CA264_00270 0.79 +1.2
65,851 - CA264_00270 0.79 -0.9
65,851 - CA264_00270 0.79 -0.9
65,854 - CA264_00270 0.79 -0.9
65,938 - CA264_00270 0.88 -0.5
65,938 - CA264_00270 0.88 +0.0
65,974 - -0.8
65,990 - +1.8
66,001 + -0.8
66,033 + -0.8
66,036 + -0.6
66,036 + -1.1
66,037 - -0.8
66,037 - -1.0
66,038 + -0.3
66,038 + +0.3
66,094 + -0.3
66,100 + +0.8
66,101 - -1.2
66,101 - -0.0
66,206 + CA264_00275 0.14 -1.4
66,249 + CA264_00275 0.24 -1.5
66,327 + CA264_00275 0.43 -3.4
66,349 + CA264_00275 0.48 -1.7
66,349 + CA264_00275 0.48 -0.7
66,350 - CA264_00275 0.49 -1.8
66,352 - CA264_00275 0.49 -1.1
66,419 + CA264_00275 0.65 -1.7
66,419 + CA264_00275 0.65 -1.1
66,419 + CA264_00275 0.65 -1.8
66,420 - CA264_00275 0.65 -1.8
66,420 - CA264_00275 0.65 -1.6
66,423 + CA264_00275 0.66 -1.4
66,510 - CA264_00275 0.87 -0.8
66,510 - CA264_00275 0.87 -1.3
66,718 - CA264_00280 0.13 -2.3
66,719 + CA264_00280 0.13 -0.8
66,754 + CA264_00280 0.16 -0.2
66,776 + CA264_00280 0.18 -1.8
66,895 + CA264_00280 0.29 -1.0
66,895 + CA264_00280 0.29 -2.7
66,896 - CA264_00280 0.29 -1.3
66,901 + CA264_00280 0.30 -2.0
66,902 - CA264_00280 0.30 -2.9
66,902 - CA264_00280 0.30 -1.0
67,145 + CA264_00280 0.52 -1.1
67,166 + CA264_00280 0.53 -2.2
67,214 - CA264_00280 0.58 -1.2
67,381 + CA264_00280 0.73 -1.2
67,420 + CA264_00280 0.76 -1.9
67,420 + CA264_00280 0.76 -2.7
67,420 + CA264_00280 0.76 -1.6
67,421 - CA264_00280 0.76 -1.0
67,421 - CA264_00280 0.76 -0.8
67,421 - CA264_00280 0.76 -1.9
67,421 - CA264_00280 0.76 +0.8
67,425 + CA264_00280 0.77 -1.7
67,431 + CA264_00280 0.77 -0.9
67,466 + CA264_00280 0.80 -2.6
67,466 + CA264_00280 0.80 -2.6
67,466 + CA264_00280 0.80 -1.4
67,467 - CA264_00280 0.81 -1.8
67,467 - CA264_00280 0.81 -1.2
67,467 - CA264_00280 0.81 -1.7
67,469 - CA264_00280 0.81 -0.9
67,469 - CA264_00280 0.81 -0.3
67,504 + CA264_00280 0.84 -1.5
67,537 - CA264_00280 0.87 -2.3
67,550 - CA264_00280 0.88 -2.0
67,552 - CA264_00280 0.88 -1.6

Or see this region's nucleotide sequence