Experiment: Cellotetraose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3782 and Atu3783 are separated by 74 nucleotides Atu3783 and Atu3784 are separated by 182 nucleotides
Atu3782: Atu3782 - two component sensor kinase, at 865,350 to 866,705
Atu3782
Atu3783: Atu3783 - glutamate synthase subunit beta, at 866,780 to 868,234
Atu3783
Atu3784: Atu3784 - glutamate synthase large subunit, at 868,417 to 873,162
Atu3784
Position (kb) 866
867
868
869 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2 at 865.829 kb on - strand, within Atu3782 at 865.863 kb on - strand, within Atu3782 at 865.940 kb on + strand, within Atu3782 at 865.948 kb on - strand, within Atu3782 at 865.962 kb on - strand, within Atu3782 at 865.967 kb on - strand, within Atu3782 at 865.967 kb on - strand, within Atu3782 at 865.967 kb on - strand, within Atu3782 at 866.139 kb on + strand, within Atu3782 at 866.209 kb on + strand, within Atu3782 at 866.222 kb on - strand, within Atu3782 at 866.265 kb on + strand, within Atu3782 at 866.274 kb on - strand, within Atu3782 at 866.294 kb on + strand, within Atu3782 at 866.294 kb on + strand, within Atu3782 at 866.302 kb on - strand, within Atu3782 at 866.341 kb on + strand, within Atu3782 at 866.341 kb on + strand, within Atu3782 at 866.341 kb on + strand, within Atu3782 at 866.349 kb on - strand, within Atu3782 at 866.349 kb on - strand, within Atu3782 at 866.349 kb on - strand, within Atu3782 at 866.349 kb on - strand, within Atu3782 at 866.437 kb on + strand, within Atu3782 at 866.470 kb on + strand, within Atu3782 at 866.470 kb on + strand, within Atu3782 at 866.476 kb on + strand, within Atu3782 at 866.481 kb on + strand, within Atu3782 at 866.489 kb on - strand, within Atu3782 at 866.600 kb on + strand at 866.608 kb on - strand at 866.637 kb on + strand at 866.861 kb on - strand at 866.895 kb on + strand at 866.903 kb on - strand at 866.926 kb on - strand, within Atu3783 at 867.120 kb on - strand, within Atu3783 at 867.122 kb on + strand, within Atu3783 at 867.217 kb on - strand, within Atu3783 at 867.227 kb on - strand, within Atu3783 at 867.227 kb on - strand, within Atu3783 at 867.236 kb on - strand, within Atu3783 at 867.308 kb on - strand, within Atu3783 at 867.442 kb on - strand, within Atu3783 at 867.447 kb on + strand, within Atu3783 at 867.447 kb on + strand, within Atu3783 at 867.455 kb on - strand, within Atu3783 at 867.455 kb on - strand, within Atu3783 at 867.591 kb on - strand, within Atu3783 at 867.595 kb on + strand, within Atu3783 at 867.615 kb on + strand, within Atu3783 at 867.615 kb on + strand, within Atu3783 at 867.623 kb on - strand, within Atu3783 at 867.623 kb on - strand, within Atu3783 at 867.623 kb on - strand, within Atu3783 at 867.655 kb on - strand, within Atu3783 at 867.667 kb on + strand, within Atu3783 at 867.675 kb on + strand, within Atu3783 at 867.689 kb on + strand, within Atu3783 at 867.829 kb on + strand, within Atu3783 at 867.849 kb on - strand, within Atu3783 at 867.866 kb on - strand, within Atu3783 at 867.939 kb on - strand, within Atu3783 at 868.024 kb on - strand, within Atu3783 at 868.076 kb on + strand, within Atu3783 at 868.120 kb on - strand at 868.176 kb on - strand at 868.218 kb on + strand at 868.218 kb on + strand at 868.272 kb on + strand at 868.318 kb on + strand at 868.481 kb on + strand at 868.488 kb on - strand at 868.669 kb on - strand at 868.760 kb on + strand at 868.805 kb on + strand at 868.850 kb on - strand at 868.866 kb on - strand at 868.899 kb on + strand, within Atu3784 at 868.907 kb on - strand, within Atu3784 at 868.907 kb on - strand, within Atu3784 at 869.062 kb on - strand, within Atu3784 at 869.111 kb on + strand, within Atu3784 at 869.119 kb on - strand, within Atu3784 at 869.139 kb on + strand, within Atu3784 at 869.161 kb on + strand, within Atu3784 at 869.161 kb on + strand, within Atu3784 at 869.177 kb on + strand, within Atu3784
Per-strain Table
Position Strand Gene LocusTag Fraction Cellotetraose (C) remove 865,829 - Atu3782 0.35 -0.0 865,863 - Atu3782 0.38 -0.0 865,940 + Atu3782 0.44 -0.0 865,948 - Atu3782 0.44 +0.0 865,962 - Atu3782 0.45 +0.1 865,967 - Atu3782 0.46 -0.3 865,967 - Atu3782 0.46 -0.7 865,967 - Atu3782 0.46 +0.5 866,139 + Atu3782 0.58 -0.0 866,209 + Atu3782 0.63 +0.1 866,222 - Atu3782 0.64 +0.1 866,265 + Atu3782 0.67 +0.6 866,274 - Atu3782 0.68 +0.7 866,294 + Atu3782 0.70 -0.1 866,294 + Atu3782 0.70 -0.3 866,302 - Atu3782 0.70 +0.1 866,341 + Atu3782 0.73 -0.4 866,341 + Atu3782 0.73 -1.8 866,341 + Atu3782 0.73 +0.1 866,349 - Atu3782 0.74 -0.0 866,349 - Atu3782 0.74 +0.2 866,349 - Atu3782 0.74 -1.5 866,349 - Atu3782 0.74 +0.3 866,437 + Atu3782 0.80 +0.4 866,470 + Atu3782 0.83 -0.1 866,470 + Atu3782 0.83 +0.0 866,476 + Atu3782 0.83 -0.0 866,481 + Atu3782 0.83 +0.9 866,489 - Atu3782 0.84 +2.0 866,600 + -0.2 866,608 - +0.4 866,637 + -0.2 866,861 - -6.4 866,895 + -1.9 866,903 - -4.6 866,926 - Atu3783 0.10 -6.5 867,120 - Atu3783 0.23 -3.1 867,122 + Atu3783 0.24 -4.4 867,217 - Atu3783 0.30 -4.3 867,227 - Atu3783 0.31 -2.4 867,227 - Atu3783 0.31 -2.2 867,236 - Atu3783 0.31 -4.8 867,308 - Atu3783 0.36 -6.1 867,442 - Atu3783 0.45 -5.9 867,447 + Atu3783 0.46 -4.2 867,447 + Atu3783 0.46 -2.3 867,455 - Atu3783 0.46 -3.8 867,455 - Atu3783 0.46 -4.0 867,591 - Atu3783 0.56 -3.2 867,595 + Atu3783 0.56 -5.0 867,615 + Atu3783 0.57 -6.1 867,615 + Atu3783 0.57 -4.9 867,623 - Atu3783 0.58 -5.8 867,623 - Atu3783 0.58 -7.2 867,623 - Atu3783 0.58 -6.1 867,655 - Atu3783 0.60 -4.6 867,667 + Atu3783 0.61 -0.9 867,675 + Atu3783 0.62 -6.4 867,689 + Atu3783 0.62 -4.7 867,829 + Atu3783 0.72 -2.6 867,849 - Atu3783 0.73 -1.3 867,866 - Atu3783 0.75 -2.9 867,939 - Atu3783 0.80 -5.7 868,024 - Atu3783 0.85 -4.7 868,076 + Atu3783 0.89 -5.6 868,120 - -3.1 868,176 - -2.9 868,218 + -3.0 868,218 + -6.3 868,272 + -3.5 868,318 + -3.6 868,481 + -1.9 868,488 - -5.2 868,669 - -3.2 868,760 + -4.8 868,805 + -3.1 868,850 - -2.9 868,866 - -4.5 868,899 + Atu3784 0.10 -4.0 868,907 - Atu3784 0.10 -2.2 868,907 - Atu3784 0.10 -6.1 869,062 - Atu3784 0.14 -5.8 869,111 + Atu3784 0.15 -2.2 869,119 - Atu3784 0.15 -4.9 869,139 + Atu3784 0.15 -3.7 869,161 + Atu3784 0.16 -5.0 869,161 + Atu3784 0.16 -0.9 869,177 + Atu3784 0.16 -3.1
Or see this region's nucleotide sequence