Experiment: Cellotetraose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3024 and Atu3025 are separated by 71 nucleotides Atu3025 and Atu3026 are separated by 15 nucleotides Atu3026 and Atu8093 are separated by 16 nucleotides
Atu3024: Atu3024 - sugar ABC transporter permease, at 16,407 to 17,936
Atu3024
Atu3025: Atu3025 - oligo alginate lyase, at 18,008 to 20,338
Atu3025
Atu3026: Atu3026 - short chain dehydrogenase, at 20,354 to 21,103
Atu3026
Atu8093: Atu8093 - hypothetical protein, at 21,120 to 22,289
Atu8093
Position (kb) 18
19
20
21 Strain fitness (log2 ratio) -1
0
1
2
3 at 17.015 kb on + strand, within Atu3024 at 17.211 kb on - strand, within Atu3024 at 17.323 kb on + strand, within Atu3024 at 17.336 kb on + strand, within Atu3024 at 17.344 kb on - strand, within Atu3024 at 17.344 kb on - strand, within Atu3024 at 17.352 kb on + strand, within Atu3024 at 17.391 kb on + strand, within Atu3024 at 17.438 kb on - strand, within Atu3024 at 17.473 kb on + strand, within Atu3024 at 17.582 kb on + strand, within Atu3024 at 17.582 kb on + strand, within Atu3024 at 17.585 kb on - strand, within Atu3024 at 17.590 kb on - strand, within Atu3024 at 17.590 kb on - strand, within Atu3024 at 17.590 kb on - strand, within Atu3024 at 17.679 kb on - strand, within Atu3024 at 17.767 kb on - strand, within Atu3024 at 17.890 kb on + strand at 17.891 kb on - strand at 17.923 kb on + strand at 17.939 kb on - strand at 17.939 kb on - strand at 17.972 kb on + strand at 18.023 kb on - strand at 18.030 kb on + strand at 18.036 kb on + strand at 18.038 kb on - strand at 18.038 kb on - strand at 18.099 kb on - strand at 18.129 kb on + strand at 18.283 kb on + strand, within Atu3025 at 18.345 kb on + strand, within Atu3025 at 18.363 kb on - strand, within Atu3025 at 18.365 kb on - strand, within Atu3025 at 18.375 kb on - strand, within Atu3025 at 18.436 kb on + strand, within Atu3025 at 18.436 kb on + strand, within Atu3025 at 18.444 kb on - strand, within Atu3025 at 18.483 kb on + strand, within Atu3025 at 18.490 kb on - strand, within Atu3025 at 18.607 kb on + strand, within Atu3025 at 18.696 kb on - strand, within Atu3025 at 18.764 kb on - strand, within Atu3025 at 18.796 kb on + strand, within Atu3025 at 18.804 kb on - strand, within Atu3025 at 18.811 kb on - strand, within Atu3025 at 18.832 kb on - strand, within Atu3025 at 18.841 kb on + strand, within Atu3025 at 19.130 kb on - strand, within Atu3025 at 19.161 kb on + strand, within Atu3025 at 19.265 kb on - strand, within Atu3025 at 19.281 kb on + strand, within Atu3025 at 19.289 kb on - strand, within Atu3025 at 19.357 kb on + strand, within Atu3025 at 19.357 kb on + strand, within Atu3025 at 19.357 kb on + strand, within Atu3025 at 19.365 kb on - strand, within Atu3025 at 19.365 kb on - strand, within Atu3025 at 19.365 kb on - strand, within Atu3025 at 19.365 kb on - strand, within Atu3025 at 19.412 kb on + strand, within Atu3025 at 19.456 kb on + strand, within Atu3025 at 19.456 kb on + strand, within Atu3025 at 19.620 kb on + strand, within Atu3025 at 19.620 kb on + strand, within Atu3025 at 19.628 kb on - strand, within Atu3025 at 19.733 kb on + strand, within Atu3025 at 19.759 kb on - strand, within Atu3025 at 19.776 kb on - strand, within Atu3025 at 19.786 kb on - strand, within Atu3025 at 19.961 kb on + strand, within Atu3025 at 20.021 kb on - strand, within Atu3025 at 20.084 kb on + strand, within Atu3025 at 20.092 kb on - strand, within Atu3025 at 20.107 kb on - strand at 20.115 kb on + strand at 20.204 kb on - strand at 20.210 kb on - strand at 20.332 kb on + strand at 20.339 kb on + strand at 20.355 kb on - strand at 20.580 kb on - strand, within Atu3026 at 20.603 kb on - strand, within Atu3026 at 20.603 kb on - strand, within Atu3026 at 20.603 kb on - strand, within Atu3026 at 20.754 kb on - strand, within Atu3026 at 20.772 kb on - strand, within Atu3026 at 20.917 kb on - strand, within Atu3026 at 20.922 kb on - strand, within Atu3026 at 20.954 kb on - strand, within Atu3026 at 20.954 kb on - strand, within Atu3026 at 20.954 kb on - strand, within Atu3026 at 21.044 kb on - strand at 21.113 kb on - strand at 21.134 kb on + strand at 21.142 kb on - strand at 21.142 kb on - strand at 21.142 kb on - strand at 21.179 kb on + strand at 21.235 kb on + strand at 21.241 kb on + strand, within Atu8093 at 21.312 kb on - strand, within Atu8093
Per-strain Table
Position Strand Gene LocusTag Fraction Cellotetraose (C) remove 17,015 + Atu3024 0.40 +1.5 17,211 - Atu3024 0.53 +0.5 17,323 + Atu3024 0.60 +0.1 17,336 + Atu3024 0.61 +1.2 17,344 - Atu3024 0.61 +0.8 17,344 - Atu3024 0.61 +1.5 17,352 + Atu3024 0.62 +0.8 17,391 + Atu3024 0.64 -0.2 17,438 - Atu3024 0.67 -0.2 17,473 + Atu3024 0.70 +1.0 17,582 + Atu3024 0.77 +0.9 17,582 + Atu3024 0.77 +1.1 17,585 - Atu3024 0.77 +0.8 17,590 - Atu3024 0.77 +0.5 17,590 - Atu3024 0.77 +1.4 17,590 - Atu3024 0.77 -0.6 17,679 - Atu3024 0.83 -0.6 17,767 - Atu3024 0.89 +0.8 17,890 + +0.2 17,891 - -0.2 17,923 + +0.8 17,939 - -0.6 17,939 - +0.9 17,972 + +0.2 18,023 - +1.2 18,030 + +0.9 18,036 + +0.9 18,038 - +0.1 18,038 - -0.1 18,099 - +1.1 18,129 + +0.9 18,283 + Atu3025 0.12 +0.7 18,345 + Atu3025 0.14 +0.5 18,363 - Atu3025 0.15 +0.5 18,365 - Atu3025 0.15 +1.0 18,375 - Atu3025 0.16 +0.5 18,436 + Atu3025 0.18 +0.6 18,436 + Atu3025 0.18 +0.2 18,444 - Atu3025 0.19 +0.8 18,483 + Atu3025 0.20 +1.3 18,490 - Atu3025 0.21 +0.4 18,607 + Atu3025 0.26 +0.9 18,696 - Atu3025 0.30 +0.7 18,764 - Atu3025 0.32 +1.5 18,796 + Atu3025 0.34 +0.0 18,804 - Atu3025 0.34 +0.1 18,811 - Atu3025 0.34 +1.0 18,832 - Atu3025 0.35 +0.9 18,841 + Atu3025 0.36 +0.6 19,130 - Atu3025 0.48 +0.9 19,161 + Atu3025 0.49 +0.1 19,265 - Atu3025 0.54 +0.1 19,281 + Atu3025 0.55 +0.6 19,289 - Atu3025 0.55 +1.5 19,357 + Atu3025 0.58 +1.2 19,357 + Atu3025 0.58 +1.4 19,357 + Atu3025 0.58 +0.6 19,365 - Atu3025 0.58 +0.4 19,365 - Atu3025 0.58 +0.7 19,365 - Atu3025 0.58 +0.7 19,365 - Atu3025 0.58 +0.8 19,412 + Atu3025 0.60 +0.4 19,456 + Atu3025 0.62 +0.2 19,456 + Atu3025 0.62 -1.0 19,620 + Atu3025 0.69 +3.4 19,620 + Atu3025 0.69 +0.8 19,628 - Atu3025 0.69 +0.6 19,733 + Atu3025 0.74 +0.9 19,759 - Atu3025 0.75 +0.9 19,776 - Atu3025 0.76 +1.1 19,786 - Atu3025 0.76 +0.5 19,961 + Atu3025 0.84 +0.2 20,021 - Atu3025 0.86 +2.3 20,084 + Atu3025 0.89 -0.6 20,092 - Atu3025 0.89 +0.9 20,107 - +0.6 20,115 + +0.4 20,204 - -0.3 20,210 - +1.5 20,332 + +0.5 20,339 + +0.4 20,355 - +1.2 20,580 - Atu3026 0.30 +0.9 20,603 - Atu3026 0.33 +0.8 20,603 - Atu3026 0.33 +0.4 20,603 - Atu3026 0.33 +1.0 20,754 - Atu3026 0.53 +0.8 20,772 - Atu3026 0.56 +0.4 20,917 - Atu3026 0.75 +0.4 20,922 - Atu3026 0.76 +0.5 20,954 - Atu3026 0.80 -0.2 20,954 - Atu3026 0.80 +1.0 20,954 - Atu3026 0.80 +0.9 21,044 - +0.9 21,113 - +1.2 21,134 + +0.1 21,142 - +1.4 21,142 - +1.1 21,142 - +1.2 21,179 + -1.6 21,235 + -0.0 21,241 + Atu8093 0.10 +0.4 21,312 - Atu8093 0.16 -0.2
Or see this region's nucleotide sequence