Experiment: Cellotetraose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3020 and Atu3021 are separated by 30 nucleotides Atu3021 and Atu3022 overlap by 4 nucleotides Atu3022 and Atu3023 are separated by 11 nucleotides
Atu3020: Atu3020 - GntR family transcriptional regulator, at 12,671 to 13,381
Atu3020
Atu3021: Atu3021 - sugar ABC transporter ATPase, at 13,412 to 14,527
Atu3021
Atu3022: Atu3022 - sugar ABC transporter permease, at 14,524 to 15,453
Atu3022
Atu3023: Atu3023 - sugar ABC transporter permease, at 15,465 to 16,346
Atu3023
Position (kb) 13
14
15 Strain fitness (log2 ratio) -1
0
1
2
3 at 12.476 kb on + strand at 12.483 kb on + strand at 12.483 kb on + strand at 12.491 kb on - strand at 12.491 kb on - strand at 12.491 kb on - strand at 12.497 kb on + strand at 12.785 kb on + strand, within Atu3020 at 12.815 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.970 kb on + strand, within Atu3020 at 12.984 kb on + strand, within Atu3020 at 13.103 kb on + strand, within Atu3020 at 13.303 kb on + strand, within Atu3020 at 13.303 kb on + strand, within Atu3020 at 13.383 kb on - strand at 13.400 kb on - strand at 13.421 kb on + strand at 13.473 kb on + strand at 13.545 kb on - strand, within Atu3021 at 13.547 kb on - strand, within Atu3021 at 13.659 kb on + strand, within Atu3021 at 13.665 kb on - strand, within Atu3021 at 13.667 kb on + strand, within Atu3021 at 13.671 kb on + strand, within Atu3021 at 13.722 kb on - strand, within Atu3021 at 13.838 kb on + strand, within Atu3021 at 13.846 kb on - strand, within Atu3021 at 13.920 kb on + strand, within Atu3021 at 13.990 kb on - strand, within Atu3021 at 14.051 kb on - strand, within Atu3021 at 14.061 kb on - strand, within Atu3021 at 14.158 kb on + strand, within Atu3021 at 14.198 kb on - strand, within Atu3021 at 14.198 kb on - strand, within Atu3021 at 14.200 kb on + strand, within Atu3021 at 14.221 kb on - strand, within Atu3021 at 14.221 kb on - strand, within Atu3021 at 14.493 kb on - strand at 14.509 kb on + strand at 14.563 kb on - strand at 14.655 kb on + strand, within Atu3022 at 14.794 kb on + strand, within Atu3022 at 14.794 kb on + strand, within Atu3022 at 14.800 kb on + strand, within Atu3022 at 14.800 kb on + strand, within Atu3022 at 14.848 kb on + strand, within Atu3022 at 14.856 kb on - strand, within Atu3022 at 14.861 kb on - strand, within Atu3022 at 14.863 kb on + strand, within Atu3022 at 14.863 kb on + strand, within Atu3022 at 14.863 kb on + strand, within Atu3022 at 14.866 kb on - strand, within Atu3022 at 14.869 kb on - strand, within Atu3022 at 14.871 kb on - strand, within Atu3022 at 14.871 kb on - strand, within Atu3022 at 14.919 kb on - strand, within Atu3022 at 14.990 kb on + strand, within Atu3022 at 15.055 kb on + strand, within Atu3022 at 15.158 kb on + strand, within Atu3022 at 15.158 kb on + strand, within Atu3022 at 15.183 kb on + strand, within Atu3022 at 15.191 kb on - strand, within Atu3022 at 15.283 kb on + strand, within Atu3022 at 15.336 kb on + strand, within Atu3022 at 15.351 kb on - strand, within Atu3022 at 15.362 kb on + strand at 15.367 kb on + strand at 15.370 kb on - strand at 15.372 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Cellotetraose (C) remove 12,476 + +1.1 12,483 + -0.1 12,483 + +2.1 12,491 - +1.1 12,491 - +1.5 12,491 - +2.9 12,497 + +0.2 12,785 + Atu3020 0.16 +0.9 12,815 + Atu3020 0.20 +0.6 12,970 + Atu3020 0.42 +1.0 12,970 + Atu3020 0.42 +1.1 12,970 + Atu3020 0.42 +0.4 12,970 + Atu3020 0.42 +1.1 12,970 + Atu3020 0.42 +1.4 12,970 + Atu3020 0.42 +0.7 12,984 + Atu3020 0.44 +0.4 13,103 + Atu3020 0.61 -0.2 13,303 + Atu3020 0.89 +2.0 13,303 + Atu3020 0.89 -1.0 13,383 - +1.9 13,400 - +1.3 13,421 + +0.2 13,473 + +1.1 13,545 - Atu3021 0.12 +0.7 13,547 - Atu3021 0.12 -1.2 13,659 + Atu3021 0.22 +1.1 13,665 - Atu3021 0.23 +1.3 13,667 + Atu3021 0.23 +0.7 13,671 + Atu3021 0.23 +1.1 13,722 - Atu3021 0.28 +1.4 13,838 + Atu3021 0.38 +0.1 13,846 - Atu3021 0.39 -0.2 13,920 + Atu3021 0.46 +0.8 13,990 - Atu3021 0.52 +0.6 14,051 - Atu3021 0.57 +1.0 14,061 - Atu3021 0.58 +1.6 14,158 + Atu3021 0.67 +1.1 14,198 - Atu3021 0.70 -0.2 14,198 - Atu3021 0.70 +0.8 14,200 + Atu3021 0.71 +0.7 14,221 - Atu3021 0.72 +0.5 14,221 - Atu3021 0.72 +2.1 14,493 - +1.3 14,509 + +0.7 14,563 - +0.9 14,655 + Atu3022 0.14 +0.5 14,794 + Atu3022 0.29 +0.3 14,794 + Atu3022 0.29 +0.2 14,800 + Atu3022 0.30 +0.9 14,800 + Atu3022 0.30 +0.6 14,848 + Atu3022 0.35 -0.5 14,856 - Atu3022 0.36 +0.2 14,861 - Atu3022 0.36 +1.9 14,863 + Atu3022 0.36 +1.2 14,863 + Atu3022 0.36 +0.9 14,863 + Atu3022 0.36 +1.4 14,866 - Atu3022 0.37 +1.3 14,869 - Atu3022 0.37 +1.6 14,871 - Atu3022 0.37 +1.1 14,871 - Atu3022 0.37 +2.9 14,919 - Atu3022 0.42 -0.2 14,990 + Atu3022 0.50 +2.1 15,055 + Atu3022 0.57 +0.8 15,158 + Atu3022 0.68 +0.4 15,158 + Atu3022 0.68 +1.5 15,183 + Atu3022 0.71 +1.7 15,191 - Atu3022 0.72 +1.0 15,283 + Atu3022 0.82 +1.8 15,336 + Atu3022 0.87 +0.5 15,351 - Atu3022 0.89 +0.8 15,362 + +0.1 15,367 + +0.8 15,370 - +1.7 15,372 + -0.1
Or see this region's nucleotide sequence