Strain Fitness in Bosea sp. OAE506 around ABIE41_RS24170

Experiment: R2A outgrowth control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS24165 and ABIE41_RS24170 are separated by 206 nucleotidesABIE41_RS24170 and ABIE41_RS24175 overlap by 4 nucleotidesABIE41_RS24175 and ABIE41_RS24180 overlap by 4 nucleotides ABIE41_RS24165: ABIE41_RS24165 - methyl-accepting chemotaxis protein, at 4,990,533 to 4,993,217 _RS24165 ABIE41_RS24170: ABIE41_RS24170 - 5-oxoprolinase subunit PxpA, at 4,993,424 to 4,994,182 _RS24170 ABIE41_RS24175: ABIE41_RS24175 - allophanate hydrolase subunit 1, at 4,994,179 to 4,994,916 _RS24175 ABIE41_RS24180: ABIE41_RS24180 - biotin-dependent carboxyltransferase family protein, at 4,994,913 to 4,995,935 _RS24180 Position (kb) 4993 4994 4995Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 4992.652 kb on + strand, within ABIE41_RS24165at 4992.652 kb on + strand, within ABIE41_RS24165at 4992.652 kb on + strand, within ABIE41_RS24165at 4992.653 kb on - strand, within ABIE41_RS24165at 4992.793 kb on + strand, within ABIE41_RS24165at 4992.793 kb on + strand, within ABIE41_RS24165at 4992.793 kb on + strand, within ABIE41_RS24165at 4992.793 kb on + strand, within ABIE41_RS24165at 4992.793 kb on + strand, within ABIE41_RS24165at 4992.793 kb on + strand, within ABIE41_RS24165at 4992.794 kb on - strand, within ABIE41_RS24165at 4992.794 kb on - strand, within ABIE41_RS24165at 4992.794 kb on - strand, within ABIE41_RS24165at 4992.794 kb on - strand, within ABIE41_RS24165at 4992.794 kb on - strand, within ABIE41_RS24165at 4992.794 kb on - strand, within ABIE41_RS24165at 4992.794 kb on - strand, within ABIE41_RS24165at 4992.794 kb on - strand, within ABIE41_RS24165at 4992.794 kb on - strand, within ABIE41_RS24165at 4992.797 kb on - strand, within ABIE41_RS24165at 4993.179 kb on + strandat 4993.179 kb on + strandat 4993.179 kb on + strandat 4993.179 kb on + strandat 4993.180 kb on - strandat 4993.180 kb on - strandat 4993.180 kb on - strandat 4993.180 kb on - strandat 4993.180 kb on - strandat 4993.180 kb on - strandat 4993.181 kb on - strandat 4993.369 kb on + strandat 4993.369 kb on + strandat 4993.369 kb on + strandat 4993.370 kb on - strandat 4993.375 kb on + strandat 4993.375 kb on + strandat 4993.376 kb on - strandat 4993.376 kb on - strandat 4993.472 kb on + strandat 4993.472 kb on + strandat 4993.473 kb on - strandat 4993.724 kb on + strand, within ABIE41_RS24170at 4993.724 kb on + strand, within ABIE41_RS24170at 4993.745 kb on + strand, within ABIE41_RS24170at 4993.745 kb on + strand, within ABIE41_RS24170at 4993.745 kb on + strand, within ABIE41_RS24170at 4993.745 kb on + strand, within ABIE41_RS24170at 4993.746 kb on - strand, within ABIE41_RS24170at 4993.746 kb on - strand, within ABIE41_RS24170at 4993.746 kb on - strand, within ABIE41_RS24170at 4993.746 kb on - strand, within ABIE41_RS24170at 4993.746 kb on - strand, within ABIE41_RS24170at 4993.934 kb on + strand, within ABIE41_RS24170at 4993.935 kb on - strand, within ABIE41_RS24170at 4994.191 kb on - strandat 4994.347 kb on + strand, within ABIE41_RS24175at 4994.347 kb on + strand, within ABIE41_RS24175at 4994.348 kb on - strand, within ABIE41_RS24175at 4994.369 kb on - strand, within ABIE41_RS24175at 4994.482 kb on + strand, within ABIE41_RS24175at 4994.482 kb on + strand, within ABIE41_RS24175at 4994.483 kb on - strand, within ABIE41_RS24175at 4994.584 kb on + strand, within ABIE41_RS24175at 4994.584 kb on + strand, within ABIE41_RS24175at 4994.584 kb on + strand, within ABIE41_RS24175at 4994.584 kb on + strand, within ABIE41_RS24175at 4994.584 kb on + strand, within ABIE41_RS24175at 4994.584 kb on + strand, within ABIE41_RS24175at 4994.584 kb on + strand, within ABIE41_RS24175at 4994.585 kb on - strand, within ABIE41_RS24175at 4994.585 kb on - strand, within ABIE41_RS24175at 4994.586 kb on + strand, within ABIE41_RS24175at 4994.586 kb on + strand, within ABIE41_RS24175at 4994.586 kb on + strand, within ABIE41_RS24175at 4994.586 kb on + strand, within ABIE41_RS24175at 4994.586 kb on + strand, within ABIE41_RS24175at 4994.586 kb on + strand, within ABIE41_RS24175at 4994.586 kb on + strand, within ABIE41_RS24175at 4994.587 kb on - strand, within ABIE41_RS24175at 4994.587 kb on - strand, within ABIE41_RS24175at 4994.587 kb on - strand, within ABIE41_RS24175at 4994.587 kb on - strand, within ABIE41_RS24175at 4994.587 kb on - strand, within ABIE41_RS24175at 4994.587 kb on - strand, within ABIE41_RS24175at 4994.587 kb on - strand, within ABIE41_RS24175at 4994.587 kb on - strand, within ABIE41_RS24175at 4994.587 kb on - strand, within ABIE41_RS24175at 4994.587 kb on - strand, within ABIE41_RS24175at 4994.587 kb on - strand, within ABIE41_RS24175at 4994.587 kb on - strand, within ABIE41_RS24175at 4994.587 kb on - strand, within ABIE41_RS24175at 4994.587 kb on - strand, within ABIE41_RS24175at 4994.590 kb on + strand, within ABIE41_RS24175at 4994.746 kb on + strand, within ABIE41_RS24175at 4994.746 kb on + strand, within ABIE41_RS24175at 4994.746 kb on + strand, within ABIE41_RS24175at 4994.746 kb on + strand, within ABIE41_RS24175at 4994.746 kb on + strand, within ABIE41_RS24175at 4994.746 kb on + strand, within ABIE41_RS24175at 4994.746 kb on + strand, within ABIE41_RS24175at 4994.747 kb on - strand, within ABIE41_RS24175at 4994.747 kb on - strand, within ABIE41_RS24175at 4994.747 kb on - strand, within ABIE41_RS24175at 4994.747 kb on - strand, within ABIE41_RS24175at 4994.747 kb on - strand, within ABIE41_RS24175at 4994.747 kb on - strand, within ABIE41_RS24175at 4994.747 kb on - strand, within ABIE41_RS24175at 4994.747 kb on - strand, within ABIE41_RS24175at 4994.747 kb on - strand, within ABIE41_RS24175at 4994.776 kb on + strand, within ABIE41_RS24175at 4994.979 kb on + strandat 4994.979 kb on + strandat 4994.979 kb on + strandat 4994.980 kb on - strandat 4994.980 kb on - strandat 4994.989 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
remove
4,992,652 + ABIE41_RS24165 0.79 -0.5
4,992,652 + ABIE41_RS24165 0.79 +0.3
4,992,652 + ABIE41_RS24165 0.79 -0.4
4,992,653 - ABIE41_RS24165 0.79 +0.8
4,992,793 + ABIE41_RS24165 0.84 +0.5
4,992,793 + ABIE41_RS24165 0.84 +1.4
4,992,793 + ABIE41_RS24165 0.84 -0.5
4,992,793 + ABIE41_RS24165 0.84 +1.0
4,992,793 + ABIE41_RS24165 0.84 -0.8
4,992,793 + ABIE41_RS24165 0.84 -3.0
4,992,794 - ABIE41_RS24165 0.84 +0.2
4,992,794 - ABIE41_RS24165 0.84 +0.1
4,992,794 - ABIE41_RS24165 0.84 +0.5
4,992,794 - ABIE41_RS24165 0.84 -1.0
4,992,794 - ABIE41_RS24165 0.84 -1.1
4,992,794 - ABIE41_RS24165 0.84 -1.7
4,992,794 - ABIE41_RS24165 0.84 +0.3
4,992,794 - ABIE41_RS24165 0.84 -2.6
4,992,794 - ABIE41_RS24165 0.84 +1.0
4,992,797 - ABIE41_RS24165 0.84 -0.3
4,993,179 + -0.6
4,993,179 + -1.0
4,993,179 + -0.9
4,993,179 + -0.8
4,993,180 - -1.5
4,993,180 - +0.4
4,993,180 - +1.0
4,993,180 - +0.5
4,993,180 - +0.8
4,993,180 - -4.9
4,993,181 - +1.6
4,993,369 + -0.1
4,993,369 + -0.3
4,993,369 + -1.0
4,993,370 - +3.0
4,993,375 + +0.4
4,993,375 + -1.2
4,993,376 - +0.1
4,993,376 - -0.5
4,993,472 + +1.6
4,993,472 + +0.4
4,993,473 - +1.8
4,993,724 + ABIE41_RS24170 0.40 -1.5
4,993,724 + ABIE41_RS24170 0.40 +0.5
4,993,745 + ABIE41_RS24170 0.42 -0.2
4,993,745 + ABIE41_RS24170 0.42 -1.4
4,993,745 + ABIE41_RS24170 0.42 -0.2
4,993,745 + ABIE41_RS24170 0.42 +1.0
4,993,746 - ABIE41_RS24170 0.42 -0.1
4,993,746 - ABIE41_RS24170 0.42 -0.5
4,993,746 - ABIE41_RS24170 0.42 -0.1
4,993,746 - ABIE41_RS24170 0.42 +1.4
4,993,746 - ABIE41_RS24170 0.42 +0.0
4,993,934 + ABIE41_RS24170 0.67 -2.8
4,993,935 - ABIE41_RS24170 0.67 +0.2
4,994,191 - +0.3
4,994,347 + ABIE41_RS24175 0.23 +1.0
4,994,347 + ABIE41_RS24175 0.23 -1.4
4,994,348 - ABIE41_RS24175 0.23 +0.2
4,994,369 - ABIE41_RS24175 0.26 +1.2
4,994,482 + ABIE41_RS24175 0.41 +0.1
4,994,482 + ABIE41_RS24175 0.41 +0.1
4,994,483 - ABIE41_RS24175 0.41 -0.1
4,994,584 + ABIE41_RS24175 0.55 +0.2
4,994,584 + ABIE41_RS24175 0.55 +1.1
4,994,584 + ABIE41_RS24175 0.55 -0.2
4,994,584 + ABIE41_RS24175 0.55 +0.7
4,994,584 + ABIE41_RS24175 0.55 -0.0
4,994,584 + ABIE41_RS24175 0.55 +0.3
4,994,584 + ABIE41_RS24175 0.55 -0.8
4,994,585 - ABIE41_RS24175 0.55 +0.6
4,994,585 - ABIE41_RS24175 0.55 -1.5
4,994,586 + ABIE41_RS24175 0.55 +0.5
4,994,586 + ABIE41_RS24175 0.55 -0.3
4,994,586 + ABIE41_RS24175 0.55 -0.2
4,994,586 + ABIE41_RS24175 0.55 +0.2
4,994,586 + ABIE41_RS24175 0.55 -0.6
4,994,586 + ABIE41_RS24175 0.55 +0.1
4,994,586 + ABIE41_RS24175 0.55 -0.4
4,994,587 - ABIE41_RS24175 0.55 -0.6
4,994,587 - ABIE41_RS24175 0.55 +1.6
4,994,587 - ABIE41_RS24175 0.55 +0.8
4,994,587 - ABIE41_RS24175 0.55 +0.9
4,994,587 - ABIE41_RS24175 0.55 +0.8
4,994,587 - ABIE41_RS24175 0.55 -1.8
4,994,587 - ABIE41_RS24175 0.55 -1.4
4,994,587 - ABIE41_RS24175 0.55 +1.0
4,994,587 - ABIE41_RS24175 0.55 +0.6
4,994,587 - ABIE41_RS24175 0.55 +0.6
4,994,587 - ABIE41_RS24175 0.55 +0.8
4,994,587 - ABIE41_RS24175 0.55 +0.2
4,994,587 - ABIE41_RS24175 0.55 +0.3
4,994,587 - ABIE41_RS24175 0.55 -0.3
4,994,590 + ABIE41_RS24175 0.56 +0.3
4,994,746 + ABIE41_RS24175 0.77 -0.7
4,994,746 + ABIE41_RS24175 0.77 +0.2
4,994,746 + ABIE41_RS24175 0.77 -0.4
4,994,746 + ABIE41_RS24175 0.77 -0.3
4,994,746 + ABIE41_RS24175 0.77 +0.3
4,994,746 + ABIE41_RS24175 0.77 -1.4
4,994,746 + ABIE41_RS24175 0.77 -1.3
4,994,747 - ABIE41_RS24175 0.77 +0.2
4,994,747 - ABIE41_RS24175 0.77 -0.2
4,994,747 - ABIE41_RS24175 0.77 +0.5
4,994,747 - ABIE41_RS24175 0.77 +0.3
4,994,747 - ABIE41_RS24175 0.77 -0.6
4,994,747 - ABIE41_RS24175 0.77 +0.2
4,994,747 - ABIE41_RS24175 0.77 +0.3
4,994,747 - ABIE41_RS24175 0.77 -0.3
4,994,747 - ABIE41_RS24175 0.77 +1.0
4,994,776 + ABIE41_RS24175 0.81 -1.5
4,994,979 + -1.0
4,994,979 + +0.5
4,994,979 + +0.1
4,994,980 - +0.3
4,994,980 - +0.8
4,994,989 - +0.1

Or see this region's nucleotide sequence