Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS23890 and ABIE41_RS23895 are separated by 107 nucleotides ABIE41_RS23895 and ABIE41_RS23900 are separated by 18 nucleotides ABIE41_RS23900 and ABIE41_RS23905 are separated by 194 nucleotides
ABIE41_RS23890: ABIE41_RS23890 - thiamine pyrophosphate-binding protein, at 4,932,118 to 4,933,788
_RS23890
ABIE41_RS23895: ABIE41_RS23895 - hypothetical protein, at 4,933,896 to 4,934,399
_RS23895
ABIE41_RS23900: ABIE41_RS23900 - transaldolase, at 4,934,418 to 4,935,374
_RS23900
ABIE41_RS23905: ABIE41_RS23905 - ABC transporter substrate-binding protein, at 4,935,569 to 4,936,570
_RS23905
Position (kb) 4934
4935
4936 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4933.477 kb on + strand, within ABIE41_RS23890 at 4933.519 kb on + strand, within ABIE41_RS23890 at 4933.520 kb on - strand, within ABIE41_RS23890 at 4933.520 kb on - strand, within ABIE41_RS23890 at 4933.520 kb on - strand, within ABIE41_RS23890 at 4933.552 kb on + strand, within ABIE41_RS23890 at 4933.553 kb on - strand, within ABIE41_RS23890 at 4933.603 kb on + strand, within ABIE41_RS23890 at 4933.604 kb on - strand, within ABIE41_RS23890 at 4933.811 kb on - strand at 4933.946 kb on + strand at 4934.037 kb on + strand, within ABIE41_RS23895 at 4934.037 kb on + strand, within ABIE41_RS23895 at 4934.038 kb on - strand, within ABIE41_RS23895 at 4934.043 kb on + strand, within ABIE41_RS23895 at 4934.043 kb on + strand, within ABIE41_RS23895 at 4934.043 kb on + strand, within ABIE41_RS23895 at 4934.043 kb on + strand, within ABIE41_RS23895 at 4934.044 kb on - strand, within ABIE41_RS23895 at 4934.148 kb on + strand, within ABIE41_RS23895 at 4934.211 kb on + strand, within ABIE41_RS23895 at 4934.211 kb on + strand, within ABIE41_RS23895 at 4934.212 kb on - strand, within ABIE41_RS23895 at 4934.255 kb on + strand, within ABIE41_RS23895 at 4934.366 kb on + strand at 4934.367 kb on - strand at 4934.367 kb on - strand at 4934.731 kb on + strand, within ABIE41_RS23900 at 4934.731 kb on + strand, within ABIE41_RS23900 at 4934.732 kb on - strand, within ABIE41_RS23900 at 4934.732 kb on - strand, within ABIE41_RS23900 at 4934.732 kb on - strand, within ABIE41_RS23900 at 4934.740 kb on + strand, within ABIE41_RS23900 at 4934.740 kb on + strand, within ABIE41_RS23900 at 4934.740 kb on + strand, within ABIE41_RS23900 at 4934.740 kb on + strand, within ABIE41_RS23900 at 4934.741 kb on - strand, within ABIE41_RS23900 at 4934.741 kb on - strand, within ABIE41_RS23900 at 4934.741 kb on - strand, within ABIE41_RS23900 at 4934.741 kb on - strand, within ABIE41_RS23900 at 4934.741 kb on - strand, within ABIE41_RS23900 at 4934.741 kb on - strand, within ABIE41_RS23900 at 4934.741 kb on - strand, within ABIE41_RS23900 at 4934.741 kb on - strand, within ABIE41_RS23900 at 4934.743 kb on + strand, within ABIE41_RS23900 at 4934.743 kb on + strand, within ABIE41_RS23900 at 4934.743 kb on + strand, within ABIE41_RS23900 at 4934.744 kb on - strand, within ABIE41_RS23900 at 4934.744 kb on - strand, within ABIE41_RS23900 at 4934.744 kb on - strand, within ABIE41_RS23900 at 4934.744 kb on - strand, within ABIE41_RS23900 at 4934.748 kb on + strand, within ABIE41_RS23900 at 4934.749 kb on + strand, within ABIE41_RS23900 at 4934.749 kb on + strand, within ABIE41_RS23900 at 4934.749 kb on + strand, within ABIE41_RS23900 at 4934.750 kb on - strand, within ABIE41_RS23900 at 4934.750 kb on - strand, within ABIE41_RS23900 at 4934.794 kb on + strand, within ABIE41_RS23900 at 4934.794 kb on + strand, within ABIE41_RS23900 at 4934.794 kb on + strand, within ABIE41_RS23900 at 4934.795 kb on - strand, within ABIE41_RS23900 at 4934.795 kb on - strand, within ABIE41_RS23900 at 4935.017 kb on + strand, within ABIE41_RS23900 at 4935.017 kb on + strand, within ABIE41_RS23900 at 4935.017 kb on + strand, within ABIE41_RS23900 at 4935.017 kb on + strand, within ABIE41_RS23900 at 4935.017 kb on + strand, within ABIE41_RS23900 at 4935.018 kb on - strand, within ABIE41_RS23900 at 4935.018 kb on - strand, within ABIE41_RS23900 at 4935.019 kb on + strand, within ABIE41_RS23900 at 4935.019 kb on + strand, within ABIE41_RS23900 at 4935.019 kb on + strand, within ABIE41_RS23900 at 4935.020 kb on - strand, within ABIE41_RS23900 at 4935.393 kb on + strand at 4935.503 kb on - strand at 4935.504 kb on + strand at 4935.504 kb on + strand at 4935.504 kb on + strand at 4935.505 kb on - strand at 4935.505 kb on - strand at 4935.505 kb on - strand at 4935.505 kb on - strand at 4935.511 kb on + strand at 4935.512 kb on - strand at 4935.512 kb on - strand at 4935.512 kb on - strand at 4935.522 kb on + strand at 4935.680 kb on + strand, within ABIE41_RS23905 at 4935.680 kb on + strand, within ABIE41_RS23905 at 4935.680 kb on + strand, within ABIE41_RS23905 at 4935.681 kb on - strand, within ABIE41_RS23905 at 4935.681 kb on - strand, within ABIE41_RS23905 at 4935.817 kb on + strand, within ABIE41_RS23905 at 4935.921 kb on - strand, within ABIE41_RS23905 at 4935.989 kb on + strand, within ABIE41_RS23905 at 4935.989 kb on + strand, within ABIE41_RS23905 at 4935.989 kb on + strand, within ABIE41_RS23905 at 4935.989 kb on + strand, within ABIE41_RS23905 at 4935.989 kb on + strand, within ABIE41_RS23905 at 4935.989 kb on + strand, within ABIE41_RS23905 at 4935.990 kb on - strand, within ABIE41_RS23905 at 4935.990 kb on - strand, within ABIE41_RS23905 at 4936.145 kb on + strand, within ABIE41_RS23905 at 4936.146 kb on - strand, within ABIE41_RS23905 at 4936.146 kb on - strand, within ABIE41_RS23905
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 4,933,477 + ABIE41_RS23890 0.81 -0.1 4,933,519 + ABIE41_RS23890 0.84 -2.1 4,933,520 - ABIE41_RS23890 0.84 +0.6 4,933,520 - ABIE41_RS23890 0.84 -1.1 4,933,520 - ABIE41_RS23890 0.84 -2.2 4,933,552 + ABIE41_RS23890 0.86 -1.0 4,933,553 - ABIE41_RS23890 0.86 +0.0 4,933,603 + ABIE41_RS23890 0.89 -0.9 4,933,604 - ABIE41_RS23890 0.89 -0.4 4,933,811 - +1.8 4,933,946 + +1.5 4,934,037 + ABIE41_RS23895 0.28 -0.8 4,934,037 + ABIE41_RS23895 0.28 +0.3 4,934,038 - ABIE41_RS23895 0.28 -0.2 4,934,043 + ABIE41_RS23895 0.29 -3.2 4,934,043 + ABIE41_RS23895 0.29 -0.1 4,934,043 + ABIE41_RS23895 0.29 -0.6 4,934,043 + ABIE41_RS23895 0.29 +1.2 4,934,044 - ABIE41_RS23895 0.29 +0.6 4,934,148 + ABIE41_RS23895 0.50 +0.3 4,934,211 + ABIE41_RS23895 0.62 +0.3 4,934,211 + ABIE41_RS23895 0.62 +0.4 4,934,212 - ABIE41_RS23895 0.63 +0.7 4,934,255 + ABIE41_RS23895 0.71 +0.6 4,934,366 + +0.2 4,934,367 - -0.3 4,934,367 - -0.3 4,934,731 + ABIE41_RS23900 0.33 -1.0 4,934,731 + ABIE41_RS23900 0.33 -0.4 4,934,732 - ABIE41_RS23900 0.33 -0.5 4,934,732 - ABIE41_RS23900 0.33 +1.0 4,934,732 - ABIE41_RS23900 0.33 -1.1 4,934,740 + ABIE41_RS23900 0.34 +1.1 4,934,740 + ABIE41_RS23900 0.34 -0.4 4,934,740 + ABIE41_RS23900 0.34 -0.4 4,934,740 + ABIE41_RS23900 0.34 -0.3 4,934,741 - ABIE41_RS23900 0.34 +0.3 4,934,741 - ABIE41_RS23900 0.34 +1.3 4,934,741 - ABIE41_RS23900 0.34 +0.7 4,934,741 - ABIE41_RS23900 0.34 -1.0 4,934,741 - ABIE41_RS23900 0.34 +0.4 4,934,741 - ABIE41_RS23900 0.34 -1.3 4,934,741 - ABIE41_RS23900 0.34 -0.2 4,934,741 - ABIE41_RS23900 0.34 +1.2 4,934,743 + ABIE41_RS23900 0.34 -0.2 4,934,743 + ABIE41_RS23900 0.34 +0.4 4,934,743 + ABIE41_RS23900 0.34 +0.6 4,934,744 - ABIE41_RS23900 0.34 -0.4 4,934,744 - ABIE41_RS23900 0.34 -0.2 4,934,744 - ABIE41_RS23900 0.34 -0.4 4,934,744 - ABIE41_RS23900 0.34 +0.0 4,934,748 + ABIE41_RS23900 0.34 -0.5 4,934,749 + ABIE41_RS23900 0.35 -0.3 4,934,749 + ABIE41_RS23900 0.35 +0.6 4,934,749 + ABIE41_RS23900 0.35 +0.0 4,934,750 - ABIE41_RS23900 0.35 -0.4 4,934,750 - ABIE41_RS23900 0.35 -0.3 4,934,794 + ABIE41_RS23900 0.39 +0.5 4,934,794 + ABIE41_RS23900 0.39 +0.9 4,934,794 + ABIE41_RS23900 0.39 -0.1 4,934,795 - ABIE41_RS23900 0.39 +0.7 4,934,795 - ABIE41_RS23900 0.39 -0.4 4,935,017 + ABIE41_RS23900 0.63 -0.4 4,935,017 + ABIE41_RS23900 0.63 +0.4 4,935,017 + ABIE41_RS23900 0.63 -2.0 4,935,017 + ABIE41_RS23900 0.63 -0.7 4,935,017 + ABIE41_RS23900 0.63 -0.8 4,935,018 - ABIE41_RS23900 0.63 +0.4 4,935,018 - ABIE41_RS23900 0.63 +0.4 4,935,019 + ABIE41_RS23900 0.63 +1.2 4,935,019 + ABIE41_RS23900 0.63 -0.6 4,935,019 + ABIE41_RS23900 0.63 +0.6 4,935,020 - ABIE41_RS23900 0.63 +0.1 4,935,393 + -1.8 4,935,503 - -0.0 4,935,504 + -0.6 4,935,504 + -0.4 4,935,504 + +0.4 4,935,505 - -0.4 4,935,505 - -0.2 4,935,505 - +1.6 4,935,505 - +1.3 4,935,511 + +0.6 4,935,512 - +0.6 4,935,512 - +1.0 4,935,512 - +1.6 4,935,522 + -1.2 4,935,680 + ABIE41_RS23905 0.11 -0.8 4,935,680 + ABIE41_RS23905 0.11 -0.8 4,935,680 + ABIE41_RS23905 0.11 +0.3 4,935,681 - ABIE41_RS23905 0.11 -0.9 4,935,681 - ABIE41_RS23905 0.11 +0.5 4,935,817 + ABIE41_RS23905 0.25 +0.6 4,935,921 - ABIE41_RS23905 0.35 -0.2 4,935,989 + ABIE41_RS23905 0.42 +0.5 4,935,989 + ABIE41_RS23905 0.42 -0.0 4,935,989 + ABIE41_RS23905 0.42 +1.2 4,935,989 + ABIE41_RS23905 0.42 +1.0 4,935,989 + ABIE41_RS23905 0.42 -0.6 4,935,989 + ABIE41_RS23905 0.42 -0.0 4,935,990 - ABIE41_RS23905 0.42 +0.8 4,935,990 - ABIE41_RS23905 0.42 -0.0 4,936,145 + ABIE41_RS23905 0.57 +0.9 4,936,146 - ABIE41_RS23905 0.58 -0.4 4,936,146 - ABIE41_RS23905 0.58 -0.4
Or see this region's nucleotide sequence