Strain Fitness in Bosea sp. OAE506 around ABIE41_RS20435

Experiment: R2A outgrowth control

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABIE41_RS20430 and ABIE41_RS20435 overlap by 4 nucleotidesABIE41_RS20435 and ABIE41_RS20440 are separated by 75 nucleotides ABIE41_RS20430: ABIE41_RS20430 - 4-hydroxythreonine-4-phosphate dehydrogenase PdxA, at 4,199,664 to 4,200,662 _RS20430 ABIE41_RS20435: ABIE41_RS20435 - four-carbon acid sugar kinase family protein, at 4,200,659 to 4,201,726 _RS20435 ABIE41_RS20440: ABIE41_RS20440 - LysR family transcriptional regulator, at 4,201,802 to 4,202,680 _RS20440 Position (kb) 4200 4201 4202Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4199.711 kb on - strandat 4199.845 kb on + strand, within ABIE41_RS20430at 4199.845 kb on + strand, within ABIE41_RS20430at 4199.845 kb on + strand, within ABIE41_RS20430at 4199.845 kb on + strand, within ABIE41_RS20430at 4199.845 kb on + strand, within ABIE41_RS20430at 4199.845 kb on + strand, within ABIE41_RS20430at 4199.845 kb on + strand, within ABIE41_RS20430at 4199.846 kb on - strand, within ABIE41_RS20430at 4199.846 kb on - strand, within ABIE41_RS20430at 4199.875 kb on + strand, within ABIE41_RS20430at 4199.875 kb on + strand, within ABIE41_RS20430at 4199.875 kb on + strand, within ABIE41_RS20430at 4199.875 kb on + strand, within ABIE41_RS20430at 4199.875 kb on + strand, within ABIE41_RS20430at 4199.876 kb on - strand, within ABIE41_RS20430at 4199.876 kb on - strand, within ABIE41_RS20430at 4199.876 kb on - strand, within ABIE41_RS20430at 4199.876 kb on - strand, within ABIE41_RS20430at 4199.876 kb on - strand, within ABIE41_RS20430at 4199.876 kb on - strand, within ABIE41_RS20430at 4200.044 kb on + strand, within ABIE41_RS20430at 4200.045 kb on - strand, within ABIE41_RS20430at 4200.238 kb on + strand, within ABIE41_RS20430at 4200.238 kb on + strand, within ABIE41_RS20430at 4200.239 kb on - strand, within ABIE41_RS20430at 4200.557 kb on - strand, within ABIE41_RS20430at 4200.557 kb on - strand, within ABIE41_RS20430at 4200.557 kb on - strand, within ABIE41_RS20430at 4201.317 kb on + strand, within ABIE41_RS20435at 4201.318 kb on - strand, within ABIE41_RS20435at 4201.318 kb on - strand, within ABIE41_RS20435at 4201.488 kb on + strand, within ABIE41_RS20435at 4201.488 kb on + strand, within ABIE41_RS20435at 4201.488 kb on + strand, within ABIE41_RS20435at 4201.488 kb on + strand, within ABIE41_RS20435at 4201.488 kb on + strand, within ABIE41_RS20435at 4201.489 kb on - strand, within ABIE41_RS20435at 4201.766 kb on + strandat 4202.354 kb on + strand, within ABIE41_RS20440at 4202.365 kb on - strand, within ABIE41_RS20440at 4202.585 kb on + strand, within ABIE41_RS20440at 4202.585 kb on + strand, within ABIE41_RS20440

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
remove
4,199,711 - +0.8
4,199,845 + ABIE41_RS20430 0.18 +0.3
4,199,845 + ABIE41_RS20430 0.18 -0.0
4,199,845 + ABIE41_RS20430 0.18 +0.5
4,199,845 + ABIE41_RS20430 0.18 -3.2
4,199,845 + ABIE41_RS20430 0.18 -0.5
4,199,845 + ABIE41_RS20430 0.18 +0.8
4,199,845 + ABIE41_RS20430 0.18 +1.9
4,199,846 - ABIE41_RS20430 0.18 +1.1
4,199,846 - ABIE41_RS20430 0.18 +0.3
4,199,875 + ABIE41_RS20430 0.21 +0.2
4,199,875 + ABIE41_RS20430 0.21 -0.1
4,199,875 + ABIE41_RS20430 0.21 +0.4
4,199,875 + ABIE41_RS20430 0.21 +0.6
4,199,875 + ABIE41_RS20430 0.21 -0.5
4,199,876 - ABIE41_RS20430 0.21 +0.5
4,199,876 - ABIE41_RS20430 0.21 -0.3
4,199,876 - ABIE41_RS20430 0.21 +0.0
4,199,876 - ABIE41_RS20430 0.21 -0.6
4,199,876 - ABIE41_RS20430 0.21 +0.1
4,199,876 - ABIE41_RS20430 0.21 +1.2
4,200,044 + ABIE41_RS20430 0.38 -0.8
4,200,045 - ABIE41_RS20430 0.38 +0.9
4,200,238 + ABIE41_RS20430 0.57 -1.4
4,200,238 + ABIE41_RS20430 0.57 +0.2
4,200,239 - ABIE41_RS20430 0.58 -1.0
4,200,557 - ABIE41_RS20430 0.89 +0.7
4,200,557 - ABIE41_RS20430 0.89 -0.2
4,200,557 - ABIE41_RS20430 0.89 -0.5
4,201,317 + ABIE41_RS20435 0.62 +0.6
4,201,318 - ABIE41_RS20435 0.62 +0.7
4,201,318 - ABIE41_RS20435 0.62 +0.5
4,201,488 + ABIE41_RS20435 0.78 -0.7
4,201,488 + ABIE41_RS20435 0.78 -0.5
4,201,488 + ABIE41_RS20435 0.78 -0.4
4,201,488 + ABIE41_RS20435 0.78 +0.4
4,201,488 + ABIE41_RS20435 0.78 -1.2
4,201,489 - ABIE41_RS20435 0.78 -0.8
4,201,766 + -0.3
4,202,354 + ABIE41_RS20440 0.63 -0.2
4,202,365 - ABIE41_RS20440 0.64 +1.3
4,202,585 + ABIE41_RS20440 0.89 -1.2
4,202,585 + ABIE41_RS20440 0.89 -1.0

Or see this region's nucleotide sequence