Strain Fitness in Bosea sp. OAE506 around ABIE41_RS17850

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS17840 and ABIE41_RS17845 are separated by 4 nucleotidesABIE41_RS17845 and ABIE41_RS17850 are separated by 401 nucleotidesABIE41_RS17850 and ABIE41_RS17855 overlap by 4 nucleotidesABIE41_RS17855 and ABIE41_RS17860 are separated by 4 nucleotidesABIE41_RS17860 and ABIE41_RS17865 are separated by 28 nucleotides ABIE41_RS17840: ABIE41_RS17840 - hypothetical protein, at 3,675,210 to 3,675,878 _RS17840 ABIE41_RS17845: ABIE41_RS17845 - peptidylprolyl isomerase, at 3,675,883 to 3,676,437 _RS17845 ABIE41_RS17850: ABIE41_RS17850 - DUF1467 family protein, at 3,676,839 to 3,677,069 _RS17850 ABIE41_RS17855: ABIE41_RS17855 - RidA family protein, at 3,677,066 to 3,677,476 _RS17855 ABIE41_RS17860: ABIE41_RS17860 - methylmalonyl-CoA epimerase, at 3,677,481 to 3,677,885 _RS17860 ABIE41_RS17865: ABIE41_RS17865 - ribonuclease J, at 3,677,914 to 3,679,584 _RS17865 Position (kb) 3676 3677 3678Strain fitness (log2 ratio) -2 -1 0 1at 3675.884 kb on + strandat 3675.885 kb on - strandat 3676.014 kb on - strand, within ABIE41_RS17845at 3676.043 kb on + strand, within ABIE41_RS17845at 3676.115 kb on + strand, within ABIE41_RS17845at 3676.115 kb on + strand, within ABIE41_RS17845at 3676.238 kb on + strand, within ABIE41_RS17845at 3676.707 kb on - strandat 3676.865 kb on - strand, within ABIE41_RS17850at 3677.191 kb on - strand, within ABIE41_RS17855at 3677.191 kb on - strand, within ABIE41_RS17855at 3677.211 kb on + strand, within ABIE41_RS17855at 3677.211 kb on + strand, within ABIE41_RS17855at 3677.212 kb on - strand, within ABIE41_RS17855at 3677.212 kb on - strand, within ABIE41_RS17855at 3677.915 kb on + strandat 3677.916 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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3,675,884 + +0.5
3,675,885 - -1.2
3,676,014 - ABIE41_RS17845 0.24 +0.6
3,676,043 + ABIE41_RS17845 0.29 +0.4
3,676,115 + ABIE41_RS17845 0.42 -1.4
3,676,115 + ABIE41_RS17845 0.42 -0.6
3,676,238 + ABIE41_RS17845 0.64 -2.2
3,676,707 - +0.2
3,676,865 - ABIE41_RS17850 0.11 -1.7
3,677,191 - ABIE41_RS17855 0.30 -0.1
3,677,191 - ABIE41_RS17855 0.30 +0.3
3,677,211 + ABIE41_RS17855 0.35 -1.3
3,677,211 + ABIE41_RS17855 0.35 -0.3
3,677,212 - ABIE41_RS17855 0.36 -1.0
3,677,212 - ABIE41_RS17855 0.36 +0.6
3,677,915 + -0.4
3,677,916 - +0.6

Or see this region's nucleotide sequence