Strain Fitness in Bosea sp. OAE506 around ABIE41_RS08465

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS08460 and ABIE41_RS08465 are separated by 152 nucleotidesABIE41_RS08465 and ABIE41_RS08470 are separated by 159 nucleotidesABIE41_RS08470 and ABIE41_RS08475 overlap by 1 nucleotides ABIE41_RS08460: ABIE41_RS08460 - HlyD family secretion protein, at 1,746,529 to 1,747,755 _RS08460 ABIE41_RS08465: ABIE41_RS08465 - DHA2 family efflux MFS transporter permease subunit, at 1,747,908 to 1,749,494 _RS08465 ABIE41_RS08470: ABIE41_RS08470 - iron response transcriptional regulator IrrA, at 1,749,654 to 1,750,214 _RS08470 ABIE41_RS08475: ABIE41_RS08475 - (2Fe-2S)-binding protein, at 1,750,214 to 1,750,498 _RS08475 Position (kb) 1747 1748 1749 1750Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1747.147 kb on + strand, within ABIE41_RS08460at 1747.148 kb on - strand, within ABIE41_RS08460at 1747.453 kb on + strand, within ABIE41_RS08460at 1747.453 kb on + strand, within ABIE41_RS08460at 1747.453 kb on + strand, within ABIE41_RS08460at 1747.453 kb on + strand, within ABIE41_RS08460at 1747.454 kb on - strand, within ABIE41_RS08460at 1747.454 kb on - strand, within ABIE41_RS08460at 1747.454 kb on - strand, within ABIE41_RS08460at 1747.454 kb on - strand, within ABIE41_RS08460at 1747.454 kb on - strand, within ABIE41_RS08460at 1747.454 kb on - strand, within ABIE41_RS08460at 1747.454 kb on - strand, within ABIE41_RS08460at 1747.839 kb on + strandat 1747.840 kb on - strandat 1747.894 kb on - strandat 1748.112 kb on + strand, within ABIE41_RS08465at 1748.112 kb on + strand, within ABIE41_RS08465at 1748.112 kb on + strand, within ABIE41_RS08465at 1748.112 kb on + strand, within ABIE41_RS08465at 1748.113 kb on - strand, within ABIE41_RS08465at 1748.113 kb on - strand, within ABIE41_RS08465at 1748.152 kb on - strand, within ABIE41_RS08465at 1748.418 kb on + strand, within ABIE41_RS08465at 1748.595 kb on + strand, within ABIE41_RS08465at 1748.595 kb on + strand, within ABIE41_RS08465at 1748.595 kb on + strand, within ABIE41_RS08465at 1748.596 kb on - strand, within ABIE41_RS08465at 1748.596 kb on - strand, within ABIE41_RS08465at 1748.596 kb on - strand, within ABIE41_RS08465at 1748.596 kb on - strand, within ABIE41_RS08465at 1748.596 kb on - strand, within ABIE41_RS08465at 1748.730 kb on + strand, within ABIE41_RS08465at 1748.731 kb on - strand, within ABIE41_RS08465at 1748.731 kb on - strand, within ABIE41_RS08465at 1748.797 kb on - strand, within ABIE41_RS08465at 1748.808 kb on + strand, within ABIE41_RS08465at 1748.808 kb on + strand, within ABIE41_RS08465at 1748.808 kb on + strand, within ABIE41_RS08465at 1748.809 kb on - strand, within ABIE41_RS08465at 1748.809 kb on - strand, within ABIE41_RS08465at 1748.809 kb on - strand, within ABIE41_RS08465at 1748.823 kb on + strand, within ABIE41_RS08465at 1748.845 kb on - strand, within ABIE41_RS08465at 1749.144 kb on + strand, within ABIE41_RS08465at 1749.144 kb on + strand, within ABIE41_RS08465at 1749.144 kb on + strand, within ABIE41_RS08465at 1749.309 kb on + strand, within ABIE41_RS08465at 1749.577 kb on + strandat 1749.578 kb on - strandat 1749.582 kb on + strandat 1749.862 kb on - strand, within ABIE41_RS08470at 1749.862 kb on - strand, within ABIE41_RS08470at 1749.909 kb on + strand, within ABIE41_RS08470at 1750.014 kb on + strand, within ABIE41_RS08470at 1750.014 kb on + strand, within ABIE41_RS08470at 1750.014 kb on + strand, within ABIE41_RS08470at 1750.014 kb on + strand, within ABIE41_RS08470at 1750.015 kb on - strand, within ABIE41_RS08470at 1750.015 kb on - strand, within ABIE41_RS08470at 1750.307 kb on + strand, within ABIE41_RS08475at 1750.307 kb on + strand, within ABIE41_RS08475at 1750.307 kb on + strand, within ABIE41_RS08475at 1750.307 kb on + strand, within ABIE41_RS08475at 1750.308 kb on - strand, within ABIE41_RS08475at 1750.308 kb on - strand, within ABIE41_RS08475at 1750.441 kb on + strand, within ABIE41_RS08475

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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1,747,147 + ABIE41_RS08460 0.50 +0.6
1,747,148 - ABIE41_RS08460 0.50 -0.4
1,747,453 + ABIE41_RS08460 0.75 -0.5
1,747,453 + ABIE41_RS08460 0.75 +1.2
1,747,453 + ABIE41_RS08460 0.75 +0.3
1,747,453 + ABIE41_RS08460 0.75 +0.1
1,747,454 - ABIE41_RS08460 0.75 -0.9
1,747,454 - ABIE41_RS08460 0.75 -0.5
1,747,454 - ABIE41_RS08460 0.75 +0.7
1,747,454 - ABIE41_RS08460 0.75 -0.4
1,747,454 - ABIE41_RS08460 0.75 +0.1
1,747,454 - ABIE41_RS08460 0.75 -2.2
1,747,454 - ABIE41_RS08460 0.75 -0.0
1,747,839 + -0.1
1,747,840 - -0.2
1,747,894 - +0.3
1,748,112 + ABIE41_RS08465 0.13 +0.9
1,748,112 + ABIE41_RS08465 0.13 -1.5
1,748,112 + ABIE41_RS08465 0.13 -0.3
1,748,112 + ABIE41_RS08465 0.13 +0.4
1,748,113 - ABIE41_RS08465 0.13 -0.6
1,748,113 - ABIE41_RS08465 0.13 -2.0
1,748,152 - ABIE41_RS08465 0.15 +1.3
1,748,418 + ABIE41_RS08465 0.32 +0.2
1,748,595 + ABIE41_RS08465 0.43 -0.7
1,748,595 + ABIE41_RS08465 0.43 -0.5
1,748,595 + ABIE41_RS08465 0.43 +1.0
1,748,596 - ABIE41_RS08465 0.43 -0.0
1,748,596 - ABIE41_RS08465 0.43 -0.3
1,748,596 - ABIE41_RS08465 0.43 +0.4
1,748,596 - ABIE41_RS08465 0.43 +0.0
1,748,596 - ABIE41_RS08465 0.43 +0.5
1,748,730 + ABIE41_RS08465 0.52 +0.1
1,748,731 - ABIE41_RS08465 0.52 -0.9
1,748,731 - ABIE41_RS08465 0.52 -0.5
1,748,797 - ABIE41_RS08465 0.56 +1.3
1,748,808 + ABIE41_RS08465 0.57 -0.6
1,748,808 + ABIE41_RS08465 0.57 -0.1
1,748,808 + ABIE41_RS08465 0.57 +0.5
1,748,809 - ABIE41_RS08465 0.57 -0.1
1,748,809 - ABIE41_RS08465 0.57 +0.4
1,748,809 - ABIE41_RS08465 0.57 +0.7
1,748,823 + ABIE41_RS08465 0.58 +0.4
1,748,845 - ABIE41_RS08465 0.59 +0.8
1,749,144 + ABIE41_RS08465 0.78 +0.6
1,749,144 + ABIE41_RS08465 0.78 +0.3
1,749,144 + ABIE41_RS08465 0.78 +0.2
1,749,309 + ABIE41_RS08465 0.88 +0.7
1,749,577 + +0.2
1,749,578 - -1.8
1,749,582 + -0.6
1,749,862 - ABIE41_RS08470 0.37 -1.2
1,749,862 - ABIE41_RS08470 0.37 -1.3
1,749,909 + ABIE41_RS08470 0.45 -1.1
1,750,014 + ABIE41_RS08470 0.64 -0.8
1,750,014 + ABIE41_RS08470 0.64 -1.9
1,750,014 + ABIE41_RS08470 0.64 -3.0
1,750,014 + ABIE41_RS08470 0.64 -0.3
1,750,015 - ABIE41_RS08470 0.64 -1.6
1,750,015 - ABIE41_RS08470 0.64 -1.0
1,750,307 + ABIE41_RS08475 0.33 +0.2
1,750,307 + ABIE41_RS08475 0.33 -0.8
1,750,307 + ABIE41_RS08475 0.33 +0.7
1,750,307 + ABIE41_RS08475 0.33 +0.3
1,750,308 - ABIE41_RS08475 0.33 +0.2
1,750,308 - ABIE41_RS08475 0.33 +2.0
1,750,441 + ABIE41_RS08475 0.80 +0.4

Or see this region's nucleotide sequence