Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06335

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS06320 and ABIE41_RS06325 are separated by 142 nucleotidesABIE41_RS06325 and ABIE41_RS06330 are separated by 291 nucleotidesABIE41_RS06330 and ABIE41_RS06335 are separated by 18 nucleotidesABIE41_RS06335 and ABIE41_RS06340 are separated by 54 nucleotides ABIE41_RS06320: ABIE41_RS06320 - tetratricopeptide repeat protein, at 1,302,976 to 1,303,641 _RS06320 ABIE41_RS06325: ABIE41_RS06325 - type B 50S ribosomal protein L36, at 1,303,784 to 1,303,909 _RS06325 ABIE41_RS06330: ABIE41_RS06330 - hypothetical protein, at 1,304,201 to 1,304,410 _RS06330 ABIE41_RS06335: ABIE41_RS06335 - GTPase ObgE, at 1,304,429 to 1,305,472 _RS06335 ABIE41_RS06340: ABIE41_RS06340 - LysR family transcriptional regulator, at 1,305,527 to 1,306,393 _RS06340 Position (kb) 1304 1305 1306Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1303.652 kb on + strandat 1304.150 kb on + strandat 1304.184 kb on - strandat 1304.263 kb on + strand, within ABIE41_RS06330at 1304.264 kb on - strand, within ABIE41_RS06330at 1305.484 kb on - strandat 1306.086 kb on + strand, within ABIE41_RS06340at 1306.087 kb on - strand, within ABIE41_RS06340at 1306.087 kb on - strand, within ABIE41_RS06340at 1306.087 kb on - strand, within ABIE41_RS06340at 1306.087 kb on - strand, within ABIE41_RS06340at 1306.087 kb on - strand, within ABIE41_RS06340at 1306.087 kb on - strand, within ABIE41_RS06340at 1306.087 kb on - strand, within ABIE41_RS06340at 1306.418 kb on + strandat 1306.458 kb on + strandat 1306.469 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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1,303,652 + +0.6
1,304,150 + -0.4
1,304,184 - -0.2
1,304,263 + ABIE41_RS06330 0.30 +0.0
1,304,264 - ABIE41_RS06330 0.30 +0.4
1,305,484 - -0.6
1,306,086 + ABIE41_RS06340 0.64 -1.5
1,306,087 - ABIE41_RS06340 0.65 -0.7
1,306,087 - ABIE41_RS06340 0.65 +0.0
1,306,087 - ABIE41_RS06340 0.65 +0.2
1,306,087 - ABIE41_RS06340 0.65 +3.0
1,306,087 - ABIE41_RS06340 0.65 -2.3
1,306,087 - ABIE41_RS06340 0.65 -1.1
1,306,087 - ABIE41_RS06340 0.65 -0.5
1,306,418 + -0.4
1,306,458 + +0.9
1,306,469 + +0.1

Or see this region's nucleotide sequence