Strain Fitness in Bosea sp. OAE506 around ABIE41_RS06150

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS06145 and ABIE41_RS06150 are separated by 202 nucleotidesABIE41_RS06150 and ABIE41_RS06155 are separated by 105 nucleotides ABIE41_RS06145: ABIE41_RS06145 - sigma-54 dependent transcriptional regulator, at 1,266,021 to 1,267,517 _RS06145 ABIE41_RS06150: ABIE41_RS06150 - M3 family oligoendopeptidase, at 1,267,720 to 1,269,564 _RS06150 ABIE41_RS06155: ABIE41_RS06155 - outer membrane beta-barrel protein, at 1,269,670 to 1,271,199 _RS06155 Position (kb) 1267 1268 1269 1270Strain fitness (log2 ratio) -2 -1 0 1 2at 1267.014 kb on + strand, within ABIE41_RS06145at 1267.014 kb on + strand, within ABIE41_RS06145at 1267.014 kb on + strand, within ABIE41_RS06145at 1267.015 kb on - strand, within ABIE41_RS06145at 1267.015 kb on - strand, within ABIE41_RS06145at 1267.015 kb on - strand, within ABIE41_RS06145at 1267.015 kb on - strand, within ABIE41_RS06145at 1267.015 kb on - strand, within ABIE41_RS06145at 1267.015 kb on - strand, within ABIE41_RS06145at 1267.439 kb on - strandat 1267.617 kb on - strandat 1267.678 kb on + strandat 1267.678 kb on + strandat 1267.678 kb on + strandat 1267.678 kb on + strandat 1267.678 kb on + strandat 1267.678 kb on + strandat 1267.678 kb on + strandat 1267.678 kb on + strandat 1267.679 kb on - strandat 1267.679 kb on - strandat 1267.679 kb on - strandat 1267.680 kb on - strandat 1267.825 kb on + strandat 1267.825 kb on + strandat 1267.903 kb on + strandat 1267.903 kb on + strandat 1267.903 kb on + strandat 1267.903 kb on + strandat 1267.904 kb on - strandat 1268.014 kb on + strand, within ABIE41_RS06150at 1268.030 kb on - strand, within ABIE41_RS06150at 1268.030 kb on - strand, within ABIE41_RS06150at 1268.068 kb on + strand, within ABIE41_RS06150at 1268.068 kb on + strand, within ABIE41_RS06150at 1268.068 kb on + strand, within ABIE41_RS06150at 1268.068 kb on + strand, within ABIE41_RS06150at 1268.068 kb on + strand, within ABIE41_RS06150at 1268.068 kb on + strand, within ABIE41_RS06150at 1268.068 kb on + strand, within ABIE41_RS06150at 1268.069 kb on + strand, within ABIE41_RS06150at 1268.069 kb on - strand, within ABIE41_RS06150at 1268.069 kb on - strand, within ABIE41_RS06150at 1268.069 kb on - strand, within ABIE41_RS06150at 1268.069 kb on - strand, within ABIE41_RS06150at 1268.069 kb on - strand, within ABIE41_RS06150at 1268.069 kb on - strand, within ABIE41_RS06150at 1268.069 kb on - strand, within ABIE41_RS06150at 1268.069 kb on - strand, within ABIE41_RS06150at 1268.069 kb on - strand, within ABIE41_RS06150at 1268.606 kb on - strand, within ABIE41_RS06150at 1268.627 kb on - strand, within ABIE41_RS06150at 1268.627 kb on - strand, within ABIE41_RS06150at 1268.629 kb on + strand, within ABIE41_RS06150at 1268.629 kb on + strand, within ABIE41_RS06150at 1268.629 kb on + strand, within ABIE41_RS06150at 1268.629 kb on + strand, within ABIE41_RS06150at 1268.629 kb on + strand, within ABIE41_RS06150at 1268.629 kb on + strand, within ABIE41_RS06150at 1268.629 kb on + strand, within ABIE41_RS06150at 1268.630 kb on - strand, within ABIE41_RS06150at 1268.630 kb on - strand, within ABIE41_RS06150at 1268.630 kb on - strand, within ABIE41_RS06150at 1268.630 kb on - strand, within ABIE41_RS06150at 1268.630 kb on - strand, within ABIE41_RS06150at 1268.630 kb on - strand, within ABIE41_RS06150at 1268.630 kb on - strand, within ABIE41_RS06150at 1268.630 kb on - strand, within ABIE41_RS06150at 1268.740 kb on - strand, within ABIE41_RS06150at 1268.756 kb on - strand, within ABIE41_RS06150at 1268.886 kb on + strand, within ABIE41_RS06150at 1268.887 kb on + strand, within ABIE41_RS06150at 1268.887 kb on + strand, within ABIE41_RS06150at 1268.887 kb on + strand, within ABIE41_RS06150at 1268.887 kb on + strand, within ABIE41_RS06150at 1268.887 kb on + strand, within ABIE41_RS06150at 1268.887 kb on + strand, within ABIE41_RS06150at 1268.887 kb on + strand, within ABIE41_RS06150at 1268.887 kb on + strand, within ABIE41_RS06150at 1268.888 kb on - strand, within ABIE41_RS06150at 1268.888 kb on - strand, within ABIE41_RS06150at 1268.888 kb on - strand, within ABIE41_RS06150at 1268.902 kb on + strand, within ABIE41_RS06150at 1268.902 kb on + strand, within ABIE41_RS06150at 1268.902 kb on + strand, within ABIE41_RS06150at 1268.902 kb on + strand, within ABIE41_RS06150at 1268.902 kb on + strand, within ABIE41_RS06150at 1268.902 kb on + strand, within ABIE41_RS06150at 1268.902 kb on + strand, within ABIE41_RS06150at 1268.902 kb on + strand, within ABIE41_RS06150at 1268.902 kb on + strand, within ABIE41_RS06150at 1268.902 kb on + strand, within ABIE41_RS06150at 1268.903 kb on - strand, within ABIE41_RS06150at 1268.903 kb on - strand, within ABIE41_RS06150at 1268.903 kb on - strand, within ABIE41_RS06150at 1268.903 kb on - strand, within ABIE41_RS06150at 1268.903 kb on - strand, within ABIE41_RS06150at 1268.903 kb on - strand, within ABIE41_RS06150at 1268.903 kb on - strand, within ABIE41_RS06150at 1269.157 kb on + strand, within ABIE41_RS06150at 1269.157 kb on + strand, within ABIE41_RS06150at 1269.157 kb on + strand, within ABIE41_RS06150at 1269.158 kb on - strand, within ABIE41_RS06150at 1269.158 kb on - strand, within ABIE41_RS06150at 1269.218 kb on + strand, within ABIE41_RS06150at 1269.218 kb on + strand, within ABIE41_RS06150at 1269.219 kb on - strand, within ABIE41_RS06150at 1269.219 kb on - strand, within ABIE41_RS06150at 1269.219 kb on - strand, within ABIE41_RS06150at 1269.219 kb on - strand, within ABIE41_RS06150at 1269.301 kb on + strand, within ABIE41_RS06150at 1269.301 kb on + strand, within ABIE41_RS06150at 1269.301 kb on + strand, within ABIE41_RS06150at 1269.301 kb on + strand, within ABIE41_RS06150at 1269.302 kb on - strand, within ABIE41_RS06150at 1269.302 kb on - strand, within ABIE41_RS06150at 1269.302 kb on - strand, within ABIE41_RS06150at 1269.302 kb on - strand, within ABIE41_RS06150at 1269.302 kb on - strand, within ABIE41_RS06150at 1269.331 kb on + strand, within ABIE41_RS06150at 1269.331 kb on + strand, within ABIE41_RS06150at 1269.331 kb on + strand, within ABIE41_RS06150at 1269.331 kb on + strand, within ABIE41_RS06150at 1269.331 kb on + strand, within ABIE41_RS06150at 1269.331 kb on + strand, within ABIE41_RS06150at 1269.331 kb on + strand, within ABIE41_RS06150at 1269.331 kb on + strand, within ABIE41_RS06150at 1269.332 kb on - strand, within ABIE41_RS06150at 1269.332 kb on - strand, within ABIE41_RS06150at 1269.332 kb on - strand, within ABIE41_RS06150at 1269.332 kb on - strand, within ABIE41_RS06150at 1269.332 kb on - strand, within ABIE41_RS06150at 1269.332 kb on - strand, within ABIE41_RS06150at 1269.332 kb on - strand, within ABIE41_RS06150at 1269.332 kb on - strand, within ABIE41_RS06150at 1269.332 kb on - strand, within ABIE41_RS06150at 1269.332 kb on - strand, within ABIE41_RS06150at 1269.332 kb on - strand, within ABIE41_RS06150at 1269.337 kb on + strand, within ABIE41_RS06150at 1269.337 kb on + strand, within ABIE41_RS06150at 1269.337 kb on + strand, within ABIE41_RS06150at 1269.337 kb on + strand, within ABIE41_RS06150at 1269.337 kb on + strand, within ABIE41_RS06150at 1269.338 kb on - strand, within ABIE41_RS06150at 1269.338 kb on - strand, within ABIE41_RS06150at 1269.344 kb on - strand, within ABIE41_RS06150at 1269.344 kb on - strand, within ABIE41_RS06150at 1269.344 kb on - strand, within ABIE41_RS06150at 1269.376 kb on + strand, within ABIE41_RS06150at 1269.376 kb on + strand, within ABIE41_RS06150at 1269.377 kb on - strand, within ABIE41_RS06150at 1269.386 kb on - strandat 1269.418 kb on + strandat 1269.419 kb on - strandat 1269.563 kb on - strandat 1269.563 kb on - strandat 1269.713 kb on + strandat 1269.713 kb on + strandat 1269.713 kb on + strandat 1269.713 kb on + strandat 1269.714 kb on - strandat 1269.714 kb on - strandat 1269.714 kb on - strandat 1269.714 kb on - strandat 1269.791 kb on + strandat 1269.791 kb on + strandat 1269.791 kb on + strandat 1269.791 kb on + strandat 1269.792 kb on - strandat 1269.792 kb on - strandat 1269.792 kb on - strandat 1269.846 kb on - strand, within ABIE41_RS06155at 1269.846 kb on - strand, within ABIE41_RS06155at 1269.846 kb on - strand, within ABIE41_RS06155at 1270.073 kb on + strand, within ABIE41_RS06155at 1270.073 kb on + strand, within ABIE41_RS06155at 1270.074 kb on - strand, within ABIE41_RS06155at 1270.074 kb on - strand, within ABIE41_RS06155at 1270.074 kb on - strand, within ABIE41_RS06155at 1270.074 kb on - strand, within ABIE41_RS06155at 1270.074 kb on - strand, within ABIE41_RS06155at 1270.259 kb on + strand, within ABIE41_RS06155at 1270.259 kb on + strand, within ABIE41_RS06155at 1270.260 kb on - strand, within ABIE41_RS06155at 1270.260 kb on - strand, within ABIE41_RS06155at 1270.346 kb on + strand, within ABIE41_RS06155at 1270.346 kb on + strand, within ABIE41_RS06155at 1270.346 kb on + strand, within ABIE41_RS06155at 1270.347 kb on - strand, within ABIE41_RS06155at 1270.347 kb on - strand, within ABIE41_RS06155at 1270.347 kb on - strand, within ABIE41_RS06155at 1270.347 kb on - strand, within ABIE41_RS06155at 1270.430 kb on + strand, within ABIE41_RS06155at 1270.430 kb on + strand, within ABIE41_RS06155at 1270.430 kb on + strand, within ABIE41_RS06155at 1270.431 kb on - strand, within ABIE41_RS06155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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1,267,014 + ABIE41_RS06145 0.66 -1.1
1,267,014 + ABIE41_RS06145 0.66 -1.6
1,267,014 + ABIE41_RS06145 0.66 +1.4
1,267,015 - ABIE41_RS06145 0.66 -1.2
1,267,015 - ABIE41_RS06145 0.66 +0.9
1,267,015 - ABIE41_RS06145 0.66 -1.0
1,267,015 - ABIE41_RS06145 0.66 -0.8
1,267,015 - ABIE41_RS06145 0.66 -0.9
1,267,015 - ABIE41_RS06145 0.66 -0.9
1,267,439 - +1.5
1,267,617 - +0.2
1,267,678 + -1.0
1,267,678 + -0.8
1,267,678 + +0.3
1,267,678 + +0.7
1,267,678 + +1.0
1,267,678 + -0.1
1,267,678 + +0.1
1,267,678 + +0.9
1,267,679 - +0.0
1,267,679 - -0.8
1,267,679 - +0.0
1,267,680 - -0.4
1,267,825 + -0.0
1,267,825 + -0.1
1,267,903 + -0.5
1,267,903 + +0.8
1,267,903 + +0.1
1,267,903 + -0.1
1,267,904 - +0.3
1,268,014 + ABIE41_RS06150 0.16 -0.3
1,268,030 - ABIE41_RS06150 0.17 -0.2
1,268,030 - ABIE41_RS06150 0.17 +0.9
1,268,068 + ABIE41_RS06150 0.19 -1.5
1,268,068 + ABIE41_RS06150 0.19 -0.9
1,268,068 + ABIE41_RS06150 0.19 -0.5
1,268,068 + ABIE41_RS06150 0.19 +0.5
1,268,068 + ABIE41_RS06150 0.19 -0.4
1,268,068 + ABIE41_RS06150 0.19 -0.9
1,268,068 + ABIE41_RS06150 0.19 -0.8
1,268,069 + ABIE41_RS06150 0.19 +0.5
1,268,069 - ABIE41_RS06150 0.19 -0.8
1,268,069 - ABIE41_RS06150 0.19 +0.6
1,268,069 - ABIE41_RS06150 0.19 +0.2
1,268,069 - ABIE41_RS06150 0.19 +0.1
1,268,069 - ABIE41_RS06150 0.19 -0.5
1,268,069 - ABIE41_RS06150 0.19 -0.7
1,268,069 - ABIE41_RS06150 0.19 -0.1
1,268,069 - ABIE41_RS06150 0.19 +0.1
1,268,069 - ABIE41_RS06150 0.19 -0.3
1,268,606 - ABIE41_RS06150 0.48 -2.2
1,268,627 - ABIE41_RS06150 0.49 -0.9
1,268,627 - ABIE41_RS06150 0.49 +0.5
1,268,629 + ABIE41_RS06150 0.49 -0.0
1,268,629 + ABIE41_RS06150 0.49 -0.1
1,268,629 + ABIE41_RS06150 0.49 +0.7
1,268,629 + ABIE41_RS06150 0.49 +1.7
1,268,629 + ABIE41_RS06150 0.49 +0.5
1,268,629 + ABIE41_RS06150 0.49 -0.0
1,268,629 + ABIE41_RS06150 0.49 -0.6
1,268,630 - ABIE41_RS06150 0.49 -0.6
1,268,630 - ABIE41_RS06150 0.49 +0.3
1,268,630 - ABIE41_RS06150 0.49 +1.5
1,268,630 - ABIE41_RS06150 0.49 -0.3
1,268,630 - ABIE41_RS06150 0.49 -0.3
1,268,630 - ABIE41_RS06150 0.49 -0.9
1,268,630 - ABIE41_RS06150 0.49 +0.6
1,268,630 - ABIE41_RS06150 0.49 +1.0
1,268,740 - ABIE41_RS06150 0.55 +0.2
1,268,756 - ABIE41_RS06150 0.56 -0.6
1,268,886 + ABIE41_RS06150 0.63 -1.0
1,268,887 + ABIE41_RS06150 0.63 -0.9
1,268,887 + ABIE41_RS06150 0.63 -0.5
1,268,887 + ABIE41_RS06150 0.63 -0.2
1,268,887 + ABIE41_RS06150 0.63 -1.1
1,268,887 + ABIE41_RS06150 0.63 -0.3
1,268,887 + ABIE41_RS06150 0.63 +0.1
1,268,887 + ABIE41_RS06150 0.63 +0.6
1,268,887 + ABIE41_RS06150 0.63 +0.5
1,268,888 - ABIE41_RS06150 0.63 +0.0
1,268,888 - ABIE41_RS06150 0.63 +0.7
1,268,888 - ABIE41_RS06150 0.63 +0.3
1,268,902 + ABIE41_RS06150 0.64 +1.1
1,268,902 + ABIE41_RS06150 0.64 +0.3
1,268,902 + ABIE41_RS06150 0.64 +0.0
1,268,902 + ABIE41_RS06150 0.64 +0.2
1,268,902 + ABIE41_RS06150 0.64 -0.8
1,268,902 + ABIE41_RS06150 0.64 +1.3
1,268,902 + ABIE41_RS06150 0.64 +0.4
1,268,902 + ABIE41_RS06150 0.64 -0.9
1,268,902 + ABIE41_RS06150 0.64 +0.4
1,268,902 + ABIE41_RS06150 0.64 +0.7
1,268,903 - ABIE41_RS06150 0.64 +0.3
1,268,903 - ABIE41_RS06150 0.64 +0.8
1,268,903 - ABIE41_RS06150 0.64 +0.4
1,268,903 - ABIE41_RS06150 0.64 +0.5
1,268,903 - ABIE41_RS06150 0.64 +0.2
1,268,903 - ABIE41_RS06150 0.64 +0.5
1,268,903 - ABIE41_RS06150 0.64 +0.3
1,269,157 + ABIE41_RS06150 0.78 -0.8
1,269,157 + ABIE41_RS06150 0.78 +1.2
1,269,157 + ABIE41_RS06150 0.78 +0.3
1,269,158 - ABIE41_RS06150 0.78 +0.0
1,269,158 - ABIE41_RS06150 0.78 +0.6
1,269,218 + ABIE41_RS06150 0.81 +0.4
1,269,218 + ABIE41_RS06150 0.81 +0.0
1,269,219 - ABIE41_RS06150 0.81 +0.6
1,269,219 - ABIE41_RS06150 0.81 -0.7
1,269,219 - ABIE41_RS06150 0.81 -0.3
1,269,219 - ABIE41_RS06150 0.81 +0.3
1,269,301 + ABIE41_RS06150 0.86 +0.3
1,269,301 + ABIE41_RS06150 0.86 +0.0
1,269,301 + ABIE41_RS06150 0.86 +0.2
1,269,301 + ABIE41_RS06150 0.86 +0.5
1,269,302 - ABIE41_RS06150 0.86 -0.1
1,269,302 - ABIE41_RS06150 0.86 -2.2
1,269,302 - ABIE41_RS06150 0.86 -1.8
1,269,302 - ABIE41_RS06150 0.86 +0.4
1,269,302 - ABIE41_RS06150 0.86 -1.8
1,269,331 + ABIE41_RS06150 0.87 +1.3
1,269,331 + ABIE41_RS06150 0.87 +1.7
1,269,331 + ABIE41_RS06150 0.87 -0.2
1,269,331 + ABIE41_RS06150 0.87 +0.3
1,269,331 + ABIE41_RS06150 0.87 +0.1
1,269,331 + ABIE41_RS06150 0.87 -0.7
1,269,331 + ABIE41_RS06150 0.87 -0.3
1,269,331 + ABIE41_RS06150 0.87 +0.5
1,269,332 - ABIE41_RS06150 0.87 -0.1
1,269,332 - ABIE41_RS06150 0.87 -0.6
1,269,332 - ABIE41_RS06150 0.87 +0.7
1,269,332 - ABIE41_RS06150 0.87 +1.3
1,269,332 - ABIE41_RS06150 0.87 +0.7
1,269,332 - ABIE41_RS06150 0.87 +1.0
1,269,332 - ABIE41_RS06150 0.87 +0.7
1,269,332 - ABIE41_RS06150 0.87 -0.1
1,269,332 - ABIE41_RS06150 0.87 +0.8
1,269,332 - ABIE41_RS06150 0.87 -1.3
1,269,332 - ABIE41_RS06150 0.87 -1.1
1,269,337 + ABIE41_RS06150 0.88 +1.1
1,269,337 + ABIE41_RS06150 0.88 -2.2
1,269,337 + ABIE41_RS06150 0.88 +1.4
1,269,337 + ABIE41_RS06150 0.88 +0.6
1,269,337 + ABIE41_RS06150 0.88 +0.5
1,269,338 - ABIE41_RS06150 0.88 +0.1
1,269,338 - ABIE41_RS06150 0.88 -0.1
1,269,344 - ABIE41_RS06150 0.88 -2.3
1,269,344 - ABIE41_RS06150 0.88 -0.1
1,269,344 - ABIE41_RS06150 0.88 +0.2
1,269,376 + ABIE41_RS06150 0.90 -0.4
1,269,376 + ABIE41_RS06150 0.90 +0.6
1,269,377 - ABIE41_RS06150 0.90 +0.7
1,269,386 - +0.4
1,269,418 + -1.8
1,269,419 - +0.6
1,269,563 - +0.6
1,269,563 - +0.7
1,269,713 + -0.2
1,269,713 + -0.8
1,269,713 + +0.2
1,269,713 + +0.4
1,269,714 - -0.2
1,269,714 - +2.1
1,269,714 - +2.7
1,269,714 - +0.0
1,269,791 + -1.8
1,269,791 + -0.5
1,269,791 + +0.0
1,269,791 + -0.6
1,269,792 - -0.3
1,269,792 - -0.9
1,269,792 - -1.3
1,269,846 - ABIE41_RS06155 0.12 -0.4
1,269,846 - ABIE41_RS06155 0.12 -0.4
1,269,846 - ABIE41_RS06155 0.12 -1.1
1,270,073 + ABIE41_RS06155 0.26 -1.1
1,270,073 + ABIE41_RS06155 0.26 -0.4
1,270,074 - ABIE41_RS06155 0.26 +0.8
1,270,074 - ABIE41_RS06155 0.26 -0.2
1,270,074 - ABIE41_RS06155 0.26 -0.5
1,270,074 - ABIE41_RS06155 0.26 -1.6
1,270,074 - ABIE41_RS06155 0.26 +0.4
1,270,259 + ABIE41_RS06155 0.38 -0.1
1,270,259 + ABIE41_RS06155 0.38 +1.4
1,270,260 - ABIE41_RS06155 0.39 +0.6
1,270,260 - ABIE41_RS06155 0.39 +0.8
1,270,346 + ABIE41_RS06155 0.44 +0.6
1,270,346 + ABIE41_RS06155 0.44 -1.4
1,270,346 + ABIE41_RS06155 0.44 +0.0
1,270,347 - ABIE41_RS06155 0.44 -0.9
1,270,347 - ABIE41_RS06155 0.44 -0.1
1,270,347 - ABIE41_RS06155 0.44 -0.1
1,270,347 - ABIE41_RS06155 0.44 +0.6
1,270,430 + ABIE41_RS06155 0.50 +1.3
1,270,430 + ABIE41_RS06155 0.50 -0.2
1,270,430 + ABIE41_RS06155 0.50 -0.3
1,270,431 - ABIE41_RS06155 0.50 +0.9

Or see this region's nucleotide sequence