Experiment: R2A outgrowth control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS01845 and ABIE41_RS01850 are separated by 12 nucleotides ABIE41_RS01850 and ABIE41_RS01855 are separated by 200 nucleotides ABIE41_RS01855 and ABIE41_RS01860 are separated by 443 nucleotides
ABIE41_RS01845: ABIE41_RS01845 - 3-oxoacid CoA-transferase subunit B, at 373,557 to 374,210
_RS01845
ABIE41_RS01850: ABIE41_RS01850 - CoA transferase subunit A, at 374,223 to 374,927
_RS01850
ABIE41_RS01855: ABIE41_RS01855 - caspase family protein, at 375,128 to 376,795
_RS01855
ABIE41_RS01860: ABIE41_RS01860 - ABC transporter ATP-binding protein, at 377,239 to 378,003
_RS01860
Position (kb) 375
376
377 Strain fitness (log2 ratio) -2
-1
0
1
2 at 374.149 kb on + strand at 374.149 kb on + strand at 374.149 kb on + strand at 374.150 kb on - strand at 374.150 kb on - strand at 374.426 kb on - strand, within ABIE41_RS01850 at 374.503 kb on + strand, within ABIE41_RS01850 at 374.503 kb on + strand, within ABIE41_RS01850 at 374.504 kb on - strand, within ABIE41_RS01850 at 374.504 kb on - strand, within ABIE41_RS01850 at 374.662 kb on + strand, within ABIE41_RS01850 at 374.662 kb on + strand, within ABIE41_RS01850 at 374.662 kb on + strand, within ABIE41_RS01850 at 374.662 kb on + strand, within ABIE41_RS01850 at 374.662 kb on + strand, within ABIE41_RS01850 at 374.662 kb on + strand, within ABIE41_RS01850 at 374.663 kb on - strand, within ABIE41_RS01850 at 374.663 kb on - strand, within ABIE41_RS01850 at 374.663 kb on - strand, within ABIE41_RS01850 at 374.663 kb on - strand, within ABIE41_RS01850 at 374.695 kb on + strand, within ABIE41_RS01850 at 374.695 kb on + strand, within ABIE41_RS01850 at 374.695 kb on + strand, within ABIE41_RS01850 at 374.696 kb on - strand, within ABIE41_RS01850 at 374.696 kb on - strand, within ABIE41_RS01850 at 374.914 kb on + strand at 374.915 kb on - strand at 374.930 kb on + strand at 374.930 kb on + strand at 374.979 kb on + strand at 374.979 kb on + strand at 374.979 kb on + strand at 374.979 kb on + strand at 375.273 kb on + strand at 375.273 kb on + strand at 375.274 kb on - strand at 375.382 kb on - strand, within ABIE41_RS01855 at 375.807 kb on + strand, within ABIE41_RS01855 at 375.816 kb on + strand, within ABIE41_RS01855 at 375.817 kb on - strand, within ABIE41_RS01855 at 375.817 kb on - strand, within ABIE41_RS01855 at 375.817 kb on - strand, within ABIE41_RS01855 at 375.817 kb on - strand, within ABIE41_RS01855 at 375.985 kb on + strand, within ABIE41_RS01855 at 376.413 kb on + strand, within ABIE41_RS01855 at 376.413 kb on + strand, within ABIE41_RS01855 at 376.413 kb on + strand, within ABIE41_RS01855 at 376.413 kb on + strand, within ABIE41_RS01855 at 376.414 kb on - strand, within ABIE41_RS01855 at 376.414 kb on - strand, within ABIE41_RS01855 at 376.414 kb on - strand, within ABIE41_RS01855 at 376.414 kb on - strand, within ABIE41_RS01855 at 376.414 kb on - strand, within ABIE41_RS01855 at 376.414 kb on - strand, within ABIE41_RS01855 at 376.449 kb on + strand, within ABIE41_RS01855 at 376.449 kb on + strand, within ABIE41_RS01855 at 376.449 kb on + strand, within ABIE41_RS01855 at 376.449 kb on + strand, within ABIE41_RS01855 at 376.450 kb on - strand, within ABIE41_RS01855 at 376.450 kb on - strand, within ABIE41_RS01855 at 376.452 kb on + strand, within ABIE41_RS01855 at 376.452 kb on + strand, within ABIE41_RS01855 at 376.452 kb on + strand, within ABIE41_RS01855 at 376.452 kb on + strand, within ABIE41_RS01855 at 376.452 kb on + strand, within ABIE41_RS01855 at 376.452 kb on + strand, within ABIE41_RS01855 at 376.453 kb on - strand, within ABIE41_RS01855 at 376.453 kb on - strand, within ABIE41_RS01855 at 376.453 kb on - strand, within ABIE41_RS01855 at 376.534 kb on - strand, within ABIE41_RS01855 at 376.626 kb on + strand, within ABIE41_RS01855 at 376.798 kb on + strand at 376.798 kb on + strand at 376.798 kb on + strand at 376.799 kb on - strand at 376.799 kb on - strand at 377.012 kb on + strand at 377.012 kb on + strand at 377.012 kb on + strand at 377.012 kb on + strand at 377.012 kb on + strand at 377.013 kb on - strand at 377.013 kb on - strand at 377.013 kb on - strand at 377.013 kb on - strand at 377.013 kb on - strand at 377.013 kb on - strand at 377.013 kb on - strand at 377.044 kb on + strand at 377.044 kb on + strand at 377.044 kb on + strand at 377.044 kb on + strand at 377.045 kb on - strand at 377.045 kb on - strand at 377.045 kb on - strand at 377.045 kb on - strand at 377.046 kb on - strand at 377.095 kb on - strand at 377.182 kb on + strand at 377.182 kb on + strand at 377.182 kb on + strand at 377.183 kb on - strand at 377.183 kb on - strand at 377.183 kb on - strand at 377.183 kb on - strand at 377.183 kb on - strand at 377.395 kb on - strand, within ABIE41_RS01860 at 377.432 kb on - strand, within ABIE41_RS01860 at 377.630 kb on + strand, within ABIE41_RS01860 at 377.631 kb on - strand, within ABIE41_RS01860 at 377.631 kb on - strand, within ABIE41_RS01860 at 377.692 kb on + strand, within ABIE41_RS01860 at 377.692 kb on + strand, within ABIE41_RS01860 at 377.693 kb on - strand, within ABIE41_RS01860 at 377.693 kb on - strand, within ABIE41_RS01860 at 377.693 kb on - strand, within ABIE41_RS01860
Per-strain Table
Position Strand Gene LocusTag Fraction R2A outgrowth control remove 374,149 + +0.7 374,149 + -0.2 374,149 + +0.2 374,150 - +1.1 374,150 - +0.8 374,426 - ABIE41_RS01850 0.29 +0.5 374,503 + ABIE41_RS01850 0.40 +0.4 374,503 + ABIE41_RS01850 0.40 -0.3 374,504 - ABIE41_RS01850 0.40 +0.3 374,504 - ABIE41_RS01850 0.40 -0.1 374,662 + ABIE41_RS01850 0.62 -0.9 374,662 + ABIE41_RS01850 0.62 +0.4 374,662 + ABIE41_RS01850 0.62 +0.1 374,662 + ABIE41_RS01850 0.62 -0.0 374,662 + ABIE41_RS01850 0.62 -0.1 374,662 + ABIE41_RS01850 0.62 -0.0 374,663 - ABIE41_RS01850 0.62 +0.1 374,663 - ABIE41_RS01850 0.62 -0.2 374,663 - ABIE41_RS01850 0.62 +0.6 374,663 - ABIE41_RS01850 0.62 +1.0 374,695 + ABIE41_RS01850 0.67 -2.3 374,695 + ABIE41_RS01850 0.67 +0.9 374,695 + ABIE41_RS01850 0.67 +0.4 374,696 - ABIE41_RS01850 0.67 +0.0 374,696 - ABIE41_RS01850 0.67 +1.6 374,914 + -0.1 374,915 - -0.7 374,930 + -0.5 374,930 + +1.2 374,979 + +0.9 374,979 + +0.5 374,979 + +0.2 374,979 + +2.2 375,273 + +0.2 375,273 + -0.7 375,274 - -0.4 375,382 - ABIE41_RS01855 0.15 -0.4 375,807 + ABIE41_RS01855 0.41 -0.1 375,816 + ABIE41_RS01855 0.41 -0.6 375,817 - ABIE41_RS01855 0.41 +0.6 375,817 - ABIE41_RS01855 0.41 -0.2 375,817 - ABIE41_RS01855 0.41 -0.9 375,817 - ABIE41_RS01855 0.41 +1.0 375,985 + ABIE41_RS01855 0.51 -0.7 376,413 + ABIE41_RS01855 0.77 -1.2 376,413 + ABIE41_RS01855 0.77 -0.1 376,413 + ABIE41_RS01855 0.77 -1.1 376,413 + ABIE41_RS01855 0.77 -0.4 376,414 - ABIE41_RS01855 0.77 -1.8 376,414 - ABIE41_RS01855 0.77 +1.6 376,414 - ABIE41_RS01855 0.77 +0.3 376,414 - ABIE41_RS01855 0.77 +0.3 376,414 - ABIE41_RS01855 0.77 +0.7 376,414 - ABIE41_RS01855 0.77 -1.9 376,449 + ABIE41_RS01855 0.79 -0.2 376,449 + ABIE41_RS01855 0.79 +0.6 376,449 + ABIE41_RS01855 0.79 +0.3 376,449 + ABIE41_RS01855 0.79 +1.9 376,450 - ABIE41_RS01855 0.79 +0.6 376,450 - ABIE41_RS01855 0.79 -0.0 376,452 + ABIE41_RS01855 0.79 -2.2 376,452 + ABIE41_RS01855 0.79 +0.9 376,452 + ABIE41_RS01855 0.79 -1.7 376,452 + ABIE41_RS01855 0.79 +0.1 376,452 + ABIE41_RS01855 0.79 +0.0 376,452 + ABIE41_RS01855 0.79 -0.4 376,453 - ABIE41_RS01855 0.79 -1.2 376,453 - ABIE41_RS01855 0.79 -0.9 376,453 - ABIE41_RS01855 0.79 -1.1 376,534 - ABIE41_RS01855 0.84 -0.2 376,626 + ABIE41_RS01855 0.90 -0.1 376,798 + +1.0 376,798 + -0.2 376,798 + -1.4 376,799 - -0.3 376,799 - +1.0 377,012 + -0.6 377,012 + -0.4 377,012 + -1.0 377,012 + -1.3 377,012 + -0.8 377,013 - -0.4 377,013 - -0.2 377,013 - +1.0 377,013 - -1.5 377,013 - +0.3 377,013 - -0.1 377,013 - -0.0 377,044 + +0.0 377,044 + +0.3 377,044 + +0.5 377,044 + -0.6 377,045 - -0.6 377,045 - -2.4 377,045 - +1.6 377,045 - +0.0 377,046 - -0.2 377,095 - +0.5 377,182 + -0.7 377,182 + +0.2 377,182 + -0.5 377,183 - -0.3 377,183 - -1.1 377,183 - -2.4 377,183 - -0.9 377,183 - -0.0 377,395 - ABIE41_RS01860 0.20 -0.5 377,432 - ABIE41_RS01860 0.25 -0.4 377,630 + ABIE41_RS01860 0.51 +0.6 377,631 - ABIE41_RS01860 0.51 -0.4 377,631 - ABIE41_RS01860 0.51 -1.5 377,692 + ABIE41_RS01860 0.59 -2.0 377,692 + ABIE41_RS01860 0.59 -0.0 377,693 - ABIE41_RS01860 0.59 -0.4 377,693 - ABIE41_RS01860 0.59 +1.1 377,693 - ABIE41_RS01860 0.59 -1.1
Or see this region's nucleotide sequence