Strain Fitness in Bosea sp. OAE506 around ABIE41_RS01595

Experiment: R2A outgrowth control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS01590 and ABIE41_RS01595 are separated by 13 nucleotidesABIE41_RS01595 and ABIE41_RS01600 are separated by 5 nucleotides ABIE41_RS01590: ABIE41_RS01590 - efflux transporter outer membrane subunit, at 316,879 to 318,402 _RS01590 ABIE41_RS01595: ABIE41_RS01595 - efflux RND transporter permease subunit, at 318,416 to 321,559 _RS01595 ABIE41_RS01600: ABIE41_RS01600 - efflux RND transporter periplasmic adaptor subunit, at 321,565 to 322,800 _RS01600 Position (kb) 318 319 320 321 322Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 317.604 kb on + strand, within ABIE41_RS01590at 317.630 kb on + strand, within ABIE41_RS01590at 317.630 kb on + strand, within ABIE41_RS01590at 317.631 kb on - strand, within ABIE41_RS01590at 317.631 kb on - strand, within ABIE41_RS01590at 317.631 kb on - strand, within ABIE41_RS01590at 317.631 kb on - strand, within ABIE41_RS01590at 317.631 kb on - strand, within ABIE41_RS01590at 317.816 kb on + strand, within ABIE41_RS01590at 317.816 kb on + strand, within ABIE41_RS01590at 317.816 kb on + strand, within ABIE41_RS01590at 317.816 kb on + strand, within ABIE41_RS01590at 317.816 kb on + strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.817 kb on - strand, within ABIE41_RS01590at 317.888 kb on + strand, within ABIE41_RS01590at 317.888 kb on + strand, within ABIE41_RS01590at 317.888 kb on + strand, within ABIE41_RS01590at 317.889 kb on - strand, within ABIE41_RS01590at 317.889 kb on - strand, within ABIE41_RS01590at 317.889 kb on - strand, within ABIE41_RS01590at 317.912 kb on + strand, within ABIE41_RS01590at 317.913 kb on - strand, within ABIE41_RS01590at 317.913 kb on - strand, within ABIE41_RS01590at 317.913 kb on - strand, within ABIE41_RS01590at 317.963 kb on + strand, within ABIE41_RS01590at 317.964 kb on - strand, within ABIE41_RS01590at 318.275 kb on + strandat 318.275 kb on + strandat 318.276 kb on - strandat 318.276 kb on - strandat 318.276 kb on - strandat 318.498 kb on + strandat 318.498 kb on + strandat 318.498 kb on + strandat 318.498 kb on + strandat 318.498 kb on + strandat 318.498 kb on + strandat 318.498 kb on + strandat 318.498 kb on + strandat 318.498 kb on + strandat 318.499 kb on - strandat 318.499 kb on - strandat 318.499 kb on - strandat 318.499 kb on - strandat 318.499 kb on - strandat 318.499 kb on - strandat 318.499 kb on - strandat 318.628 kb on + strandat 318.628 kb on + strandat 318.628 kb on + strandat 318.795 kb on + strand, within ABIE41_RS01595at 318.796 kb on - strand, within ABIE41_RS01595at 318.796 kb on - strand, within ABIE41_RS01595at 318.897 kb on + strand, within ABIE41_RS01595at 318.897 kb on + strand, within ABIE41_RS01595at 318.897 kb on + strand, within ABIE41_RS01595at 318.897 kb on + strand, within ABIE41_RS01595at 318.981 kb on + strand, within ABIE41_RS01595at 318.982 kb on - strand, within ABIE41_RS01595at 319.116 kb on + strand, within ABIE41_RS01595at 319.117 kb on - strand, within ABIE41_RS01595at 319.117 kb on - strand, within ABIE41_RS01595at 319.140 kb on + strand, within ABIE41_RS01595at 319.140 kb on + strand, within ABIE41_RS01595at 319.141 kb on - strand, within ABIE41_RS01595at 319.141 kb on - strand, within ABIE41_RS01595at 319.141 kb on - strand, within ABIE41_RS01595at 319.203 kb on + strand, within ABIE41_RS01595at 319.203 kb on + strand, within ABIE41_RS01595at 319.203 kb on + strand, within ABIE41_RS01595at 319.203 kb on + strand, within ABIE41_RS01595at 319.203 kb on + strand, within ABIE41_RS01595at 319.204 kb on - strand, within ABIE41_RS01595at 319.204 kb on - strand, within ABIE41_RS01595at 319.204 kb on - strand, within ABIE41_RS01595at 319.204 kb on - strand, within ABIE41_RS01595at 319.204 kb on - strand, within ABIE41_RS01595at 319.204 kb on - strand, within ABIE41_RS01595at 319.204 kb on - strand, within ABIE41_RS01595at 319.204 kb on - strand, within ABIE41_RS01595at 319.257 kb on + strand, within ABIE41_RS01595at 319.257 kb on + strand, within ABIE41_RS01595at 319.257 kb on + strand, within ABIE41_RS01595at 319.257 kb on + strand, within ABIE41_RS01595at 319.258 kb on - strand, within ABIE41_RS01595at 319.258 kb on - strand, within ABIE41_RS01595at 319.299 kb on + strand, within ABIE41_RS01595at 319.299 kb on + strand, within ABIE41_RS01595at 319.299 kb on + strand, within ABIE41_RS01595at 319.299 kb on + strand, within ABIE41_RS01595at 319.300 kb on - strand, within ABIE41_RS01595at 319.300 kb on - strand, within ABIE41_RS01595at 319.300 kb on - strand, within ABIE41_RS01595at 319.392 kb on + strand, within ABIE41_RS01595at 319.392 kb on + strand, within ABIE41_RS01595at 319.393 kb on - strand, within ABIE41_RS01595at 319.393 kb on - strand, within ABIE41_RS01595at 319.521 kb on + strand, within ABIE41_RS01595at 319.521 kb on + strand, within ABIE41_RS01595at 319.522 kb on - strand, within ABIE41_RS01595at 319.682 kb on + strand, within ABIE41_RS01595at 319.682 kb on + strand, within ABIE41_RS01595at 319.683 kb on - strand, within ABIE41_RS01595at 319.776 kb on + strand, within ABIE41_RS01595at 319.777 kb on - strand, within ABIE41_RS01595at 319.777 kb on - strand, within ABIE41_RS01595at 319.777 kb on - strand, within ABIE41_RS01595at 319.908 kb on + strand, within ABIE41_RS01595at 319.908 kb on + strand, within ABIE41_RS01595at 319.908 kb on + strand, within ABIE41_RS01595at 319.908 kb on + strand, within ABIE41_RS01595at 319.908 kb on + strand, within ABIE41_RS01595at 319.909 kb on - strand, within ABIE41_RS01595at 319.909 kb on - strand, within ABIE41_RS01595at 319.909 kb on - strand, within ABIE41_RS01595at 319.909 kb on - strand, within ABIE41_RS01595at 319.909 kb on - strand, within ABIE41_RS01595at 319.909 kb on - strand, within ABIE41_RS01595at 319.909 kb on - strand, within ABIE41_RS01595at 319.909 kb on - strand, within ABIE41_RS01595at 319.909 kb on - strand, within ABIE41_RS01595at 319.909 kb on - strand, within ABIE41_RS01595at 319.909 kb on - strand, within ABIE41_RS01595at 319.909 kb on - strand, within ABIE41_RS01595at 319.987 kb on + strand, within ABIE41_RS01595at 319.987 kb on + strand, within ABIE41_RS01595at 319.988 kb on - strand, within ABIE41_RS01595at 319.990 kb on - strand, within ABIE41_RS01595at 319.990 kb on - strand, within ABIE41_RS01595at 319.990 kb on - strand, within ABIE41_RS01595at 319.990 kb on - strand, within ABIE41_RS01595at 320.069 kb on + strand, within ABIE41_RS01595at 320.069 kb on + strand, within ABIE41_RS01595at 320.069 kb on + strand, within ABIE41_RS01595at 320.069 kb on + strand, within ABIE41_RS01595at 320.069 kb on + strand, within ABIE41_RS01595at 320.070 kb on - strand, within ABIE41_RS01595at 320.070 kb on - strand, within ABIE41_RS01595at 320.493 kb on + strand, within ABIE41_RS01595at 320.493 kb on + strand, within ABIE41_RS01595at 320.493 kb on + strand, within ABIE41_RS01595at 320.493 kb on + strand, within ABIE41_RS01595at 320.493 kb on + strand, within ABIE41_RS01595at 320.493 kb on + strand, within ABIE41_RS01595at 320.493 kb on + strand, within ABIE41_RS01595at 320.493 kb on + strand, within ABIE41_RS01595at 320.493 kb on + strand, within ABIE41_RS01595at 320.493 kb on + strand, within ABIE41_RS01595at 320.494 kb on - strand, within ABIE41_RS01595at 320.494 kb on - strand, within ABIE41_RS01595at 320.494 kb on - strand, within ABIE41_RS01595at 320.494 kb on - strand, within ABIE41_RS01595at 320.494 kb on - strand, within ABIE41_RS01595at 320.494 kb on - strand, within ABIE41_RS01595at 320.494 kb on - strand, within ABIE41_RS01595at 320.494 kb on - strand, within ABIE41_RS01595at 320.494 kb on - strand, within ABIE41_RS01595at 320.586 kb on + strand, within ABIE41_RS01595at 320.587 kb on - strand, within ABIE41_RS01595at 320.656 kb on + strand, within ABIE41_RS01595at 320.657 kb on - strand, within ABIE41_RS01595at 320.718 kb on + strand, within ABIE41_RS01595at 320.719 kb on - strand, within ABIE41_RS01595at 320.736 kb on + strand, within ABIE41_RS01595at 320.736 kb on + strand, within ABIE41_RS01595at 320.736 kb on + strand, within ABIE41_RS01595at 320.736 kb on + strand, within ABIE41_RS01595at 320.736 kb on + strand, within ABIE41_RS01595at 320.737 kb on - strand, within ABIE41_RS01595at 320.737 kb on - strand, within ABIE41_RS01595at 320.737 kb on - strand, within ABIE41_RS01595at 320.973 kb on + strand, within ABIE41_RS01595at 320.973 kb on + strand, within ABIE41_RS01595at 320.973 kb on + strand, within ABIE41_RS01595at 320.974 kb on - strand, within ABIE41_RS01595at 320.974 kb on - strand, within ABIE41_RS01595at 321.016 kb on - strand, within ABIE41_RS01595at 321.091 kb on - strand, within ABIE41_RS01595at 321.181 kb on + strand, within ABIE41_RS01595at 321.330 kb on + strandat 321.330 kb on + strandat 321.330 kb on + strandat 321.330 kb on + strandat 321.330 kb on + strandat 321.330 kb on + strandat 321.330 kb on + strandat 321.330 kb on + strandat 321.330 kb on + strandat 321.330 kb on + strandat 321.330 kb on + strandat 321.330 kb on + strandat 321.330 kb on + strandat 321.330 kb on + strandat 321.330 kb on + strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.331 kb on - strandat 321.414 kb on + strandat 321.414 kb on + strandat 321.415 kb on - strandat 321.734 kb on - strand, within ABIE41_RS01600at 322.031 kb on + strand, within ABIE41_RS01600at 322.031 kb on + strand, within ABIE41_RS01600at 322.512 kb on - strand, within ABIE41_RS01600

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A outgrowth control
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317,604 + ABIE41_RS01590 0.48 -1.0
317,630 + ABIE41_RS01590 0.49 +0.8
317,630 + ABIE41_RS01590 0.49 +0.3
317,631 - ABIE41_RS01590 0.49 +0.7
317,631 - ABIE41_RS01590 0.49 +1.4
317,631 - ABIE41_RS01590 0.49 -0.4
317,631 - ABIE41_RS01590 0.49 -0.2
317,631 - ABIE41_RS01590 0.49 +1.6
317,816 + ABIE41_RS01590 0.61 +0.8
317,816 + ABIE41_RS01590 0.61 +0.2
317,816 + ABIE41_RS01590 0.61 -1.8
317,816 + ABIE41_RS01590 0.61 +1.6
317,816 + ABIE41_RS01590 0.61 -0.2
317,817 - ABIE41_RS01590 0.62 +0.0
317,817 - ABIE41_RS01590 0.62 +0.7
317,817 - ABIE41_RS01590 0.62 +0.0
317,817 - ABIE41_RS01590 0.62 +0.6
317,817 - ABIE41_RS01590 0.62 +0.1
317,817 - ABIE41_RS01590 0.62 +1.1
317,817 - ABIE41_RS01590 0.62 +1.1
317,817 - ABIE41_RS01590 0.62 +0.6
317,817 - ABIE41_RS01590 0.62 -1.9
317,817 - ABIE41_RS01590 0.62 +0.1
317,817 - ABIE41_RS01590 0.62 -1.3
317,888 + ABIE41_RS01590 0.66 -1.0
317,888 + ABIE41_RS01590 0.66 +1.4
317,888 + ABIE41_RS01590 0.66 -1.3
317,889 - ABIE41_RS01590 0.66 -1.3
317,889 - ABIE41_RS01590 0.66 -1.9
317,889 - ABIE41_RS01590 0.66 +0.9
317,912 + ABIE41_RS01590 0.68 +2.0
317,913 - ABIE41_RS01590 0.68 -2.1
317,913 - ABIE41_RS01590 0.68 -0.2
317,913 - ABIE41_RS01590 0.68 -1.0
317,963 + ABIE41_RS01590 0.71 +0.4
317,964 - ABIE41_RS01590 0.71 +1.1
318,275 + +0.6
318,275 + +0.3
318,276 - +0.1
318,276 - -0.1
318,276 - +0.5
318,498 + -1.6
318,498 + -0.4
318,498 + +0.3
318,498 + +0.6
318,498 + -1.4
318,498 + +0.7
318,498 + +1.6
318,498 + -1.4
318,498 + -0.1
318,499 - -0.2
318,499 - +0.0
318,499 - -2.4
318,499 - +0.0
318,499 - -0.1
318,499 - +1.6
318,499 - +0.3
318,628 + -0.9
318,628 + -0.4
318,628 + -1.4
318,795 + ABIE41_RS01595 0.12 +1.4
318,796 - ABIE41_RS01595 0.12 +0.1
318,796 - ABIE41_RS01595 0.12 +1.5
318,897 + ABIE41_RS01595 0.15 -0.8
318,897 + ABIE41_RS01595 0.15 +1.6
318,897 + ABIE41_RS01595 0.15 -0.3
318,897 + ABIE41_RS01595 0.15 -1.4
318,981 + ABIE41_RS01595 0.18 -0.4
318,982 - ABIE41_RS01595 0.18 +0.9
319,116 + ABIE41_RS01595 0.22 +0.0
319,117 - ABIE41_RS01595 0.22 -0.4
319,117 - ABIE41_RS01595 0.22 +0.3
319,140 + ABIE41_RS01595 0.23 -0.2
319,140 + ABIE41_RS01595 0.23 +0.6
319,141 - ABIE41_RS01595 0.23 +0.2
319,141 - ABIE41_RS01595 0.23 +0.6
319,141 - ABIE41_RS01595 0.23 +0.6
319,203 + ABIE41_RS01595 0.25 +0.0
319,203 + ABIE41_RS01595 0.25 -0.9
319,203 + ABIE41_RS01595 0.25 +1.6
319,203 + ABIE41_RS01595 0.25 +0.2
319,203 + ABIE41_RS01595 0.25 -1.6
319,204 - ABIE41_RS01595 0.25 -0.1
319,204 - ABIE41_RS01595 0.25 +0.8
319,204 - ABIE41_RS01595 0.25 -0.7
319,204 - ABIE41_RS01595 0.25 -0.8
319,204 - ABIE41_RS01595 0.25 +0.8
319,204 - ABIE41_RS01595 0.25 +0.7
319,204 - ABIE41_RS01595 0.25 +0.4
319,204 - ABIE41_RS01595 0.25 -0.8
319,257 + ABIE41_RS01595 0.27 +0.5
319,257 + ABIE41_RS01595 0.27 -0.3
319,257 + ABIE41_RS01595 0.27 -0.5
319,257 + ABIE41_RS01595 0.27 -0.7
319,258 - ABIE41_RS01595 0.27 -0.3
319,258 - ABIE41_RS01595 0.27 -0.6
319,299 + ABIE41_RS01595 0.28 -1.2
319,299 + ABIE41_RS01595 0.28 -0.7
319,299 + ABIE41_RS01595 0.28 -0.4
319,299 + ABIE41_RS01595 0.28 -0.7
319,300 - ABIE41_RS01595 0.28 +0.7
319,300 - ABIE41_RS01595 0.28 +0.1
319,300 - ABIE41_RS01595 0.28 -0.5
319,392 + ABIE41_RS01595 0.31 -0.3
319,392 + ABIE41_RS01595 0.31 -0.4
319,393 - ABIE41_RS01595 0.31 -0.2
319,393 - ABIE41_RS01595 0.31 -1.5
319,521 + ABIE41_RS01595 0.35 -0.2
319,521 + ABIE41_RS01595 0.35 -0.7
319,522 - ABIE41_RS01595 0.35 -0.7
319,682 + ABIE41_RS01595 0.40 +0.1
319,682 + ABIE41_RS01595 0.40 +0.8
319,683 - ABIE41_RS01595 0.40 -0.1
319,776 + ABIE41_RS01595 0.43 +1.2
319,777 - ABIE41_RS01595 0.43 +1.3
319,777 - ABIE41_RS01595 0.43 -0.1
319,777 - ABIE41_RS01595 0.43 -0.2
319,908 + ABIE41_RS01595 0.47 +0.1
319,908 + ABIE41_RS01595 0.47 -0.7
319,908 + ABIE41_RS01595 0.47 -0.7
319,908 + ABIE41_RS01595 0.47 +0.6
319,908 + ABIE41_RS01595 0.47 +0.1
319,909 - ABIE41_RS01595 0.47 +0.1
319,909 - ABIE41_RS01595 0.47 +2.0
319,909 - ABIE41_RS01595 0.47 -2.8
319,909 - ABIE41_RS01595 0.47 -0.5
319,909 - ABIE41_RS01595 0.47 +0.0
319,909 - ABIE41_RS01595 0.47 +0.3
319,909 - ABIE41_RS01595 0.47 -1.3
319,909 - ABIE41_RS01595 0.47 -0.4
319,909 - ABIE41_RS01595 0.47 -0.8
319,909 - ABIE41_RS01595 0.47 -0.3
319,909 - ABIE41_RS01595 0.47 +1.4
319,909 - ABIE41_RS01595 0.47 -0.9
319,987 + ABIE41_RS01595 0.50 -1.4
319,987 + ABIE41_RS01595 0.50 +0.0
319,988 - ABIE41_RS01595 0.50 -0.6
319,990 - ABIE41_RS01595 0.50 +0.6
319,990 - ABIE41_RS01595 0.50 +0.0
319,990 - ABIE41_RS01595 0.50 -0.9
319,990 - ABIE41_RS01595 0.50 -1.5
320,069 + ABIE41_RS01595 0.53 +0.6
320,069 + ABIE41_RS01595 0.53 +0.4
320,069 + ABIE41_RS01595 0.53 -1.1
320,069 + ABIE41_RS01595 0.53 +0.4
320,069 + ABIE41_RS01595 0.53 +2.6
320,070 - ABIE41_RS01595 0.53 +1.0
320,070 - ABIE41_RS01595 0.53 +0.0
320,493 + ABIE41_RS01595 0.66 -1.2
320,493 + ABIE41_RS01595 0.66 +0.5
320,493 + ABIE41_RS01595 0.66 -1.1
320,493 + ABIE41_RS01595 0.66 +0.6
320,493 + ABIE41_RS01595 0.66 -0.0
320,493 + ABIE41_RS01595 0.66 +0.4
320,493 + ABIE41_RS01595 0.66 -1.1
320,493 + ABIE41_RS01595 0.66 +0.2
320,493 + ABIE41_RS01595 0.66 -0.6
320,493 + ABIE41_RS01595 0.66 -1.8
320,494 - ABIE41_RS01595 0.66 +0.0
320,494 - ABIE41_RS01595 0.66 -1.1
320,494 - ABIE41_RS01595 0.66 +0.0
320,494 - ABIE41_RS01595 0.66 +0.2
320,494 - ABIE41_RS01595 0.66 -0.5
320,494 - ABIE41_RS01595 0.66 +0.6
320,494 - ABIE41_RS01595 0.66 +0.5
320,494 - ABIE41_RS01595 0.66 -0.7
320,494 - ABIE41_RS01595 0.66 +0.8
320,586 + ABIE41_RS01595 0.69 -0.7
320,587 - ABIE41_RS01595 0.69 +0.4
320,656 + ABIE41_RS01595 0.71 -0.0
320,657 - ABIE41_RS01595 0.71 +0.9
320,718 + ABIE41_RS01595 0.73 +0.9
320,719 - ABIE41_RS01595 0.73 -0.6
320,736 + ABIE41_RS01595 0.74 +0.1
320,736 + ABIE41_RS01595 0.74 -0.2
320,736 + ABIE41_RS01595 0.74 -1.5
320,736 + ABIE41_RS01595 0.74 +0.2
320,736 + ABIE41_RS01595 0.74 -1.0
320,737 - ABIE41_RS01595 0.74 +0.3
320,737 - ABIE41_RS01595 0.74 -1.4
320,737 - ABIE41_RS01595 0.74 +1.4
320,973 + ABIE41_RS01595 0.81 +0.4
320,973 + ABIE41_RS01595 0.81 -0.4
320,973 + ABIE41_RS01595 0.81 -0.5
320,974 - ABIE41_RS01595 0.81 +1.1
320,974 - ABIE41_RS01595 0.81 +1.0
321,016 - ABIE41_RS01595 0.83 -0.6
321,091 - ABIE41_RS01595 0.85 +0.1
321,181 + ABIE41_RS01595 0.88 -1.0
321,330 + -0.1
321,330 + +0.6
321,330 + -0.3
321,330 + -0.8
321,330 + +0.6
321,330 + +0.2
321,330 + +0.5
321,330 + -0.0
321,330 + -1.1
321,330 + +0.3
321,330 + -0.1
321,330 + +0.3
321,330 + -0.1
321,330 + -0.3
321,330 + -0.4
321,331 - -0.2
321,331 - +1.0
321,331 - -0.7
321,331 - -1.8
321,331 - +0.8
321,331 - +0.3
321,331 - -1.1
321,331 - -0.2
321,331 - -1.3
321,331 - -0.2
321,331 - +1.5
321,331 - +0.7
321,331 - +0.6
321,331 - +0.9
321,331 - +0.7
321,331 - +1.3
321,331 - +1.4
321,331 - -0.6
321,331 - +0.3
321,331 - +0.0
321,331 - -1.0
321,414 + -1.5
321,414 + +0.5
321,415 - +0.1
321,734 - ABIE41_RS01600 0.14 -1.2
322,031 + ABIE41_RS01600 0.38 -1.1
322,031 + ABIE41_RS01600 0.38 -0.4
322,512 - ABIE41_RS01600 0.77 -1.7

Or see this region's nucleotide sequence