Experiment: L-Valine (C) 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PFR28_00534 and PFR28_00535 are separated by 24 nucleotides PFR28_00535 and PFR28_00536 are separated by 330 nucleotides PFR28_00536 and PFR28_00537 are separated by 0 nucleotides PFR28_00537 and PFR28_00538 overlap by 4 nucleotides
PFR28_00534: PFR28_00534 - hypothetical protein, at 568,192 to 569,061
_00534
PFR28_00535: PFR28_00535 - hypothetical protein, at 569,086 to 569,391
_00535
PFR28_00536: PFR28_00536 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 569,722 to 570,423
_00536
PFR28_00537: PFR28_00537 - Lipopolysaccharide export system ATP-binding protein LptB, at 570,424 to 571,191
_00537
PFR28_00538: PFR28_00538 - hypothetical protein, at 571,188 to 572,453
_00538
Position (kb) 569
570
571 Strain fitness (log2 ratio) -1
0
1
2
3 at 568.925 kb on + strand, within PFR28_00534 at 568.925 kb on + strand, within PFR28_00534 at 568.925 kb on + strand, within PFR28_00534 at 568.925 kb on + strand, within PFR28_00534 at 568.925 kb on + strand, within PFR28_00534 at 568.925 kb on + strand, within PFR28_00534 at 568.925 kb on + strand, within PFR28_00534 at 568.926 kb on - strand, within PFR28_00534 at 568.926 kb on - strand, within PFR28_00534 at 568.926 kb on - strand, within PFR28_00534 at 568.926 kb on - strand, within PFR28_00534 at 568.926 kb on - strand, within PFR28_00534 at 569.166 kb on + strand, within PFR28_00535 at 569.195 kb on + strand, within PFR28_00535 at 569.196 kb on - strand, within PFR28_00535 at 569.447 kb on + strand at 569.447 kb on + strand at 569.447 kb on + strand at 569.448 kb on - strand at 569.448 kb on - strand at 569.448 kb on - strand at 569.448 kb on - strand at 569.448 kb on - strand at 569.448 kb on - strand at 569.472 kb on - strand at 569.487 kb on + strand at 569.620 kb on + strand at 569.641 kb on + strand at 569.641 kb on + strand at 569.641 kb on + strand at 569.641 kb on + strand at 569.641 kb on + strand at 569.641 kb on + strand at 569.641 kb on + strand at 569.641 kb on + strand at 569.641 kb on + strand at 569.641 kb on + strand at 569.641 kb on + strand at 569.641 kb on + strand at 569.641 kb on + strand at 569.641 kb on + strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.642 kb on - strand at 569.735 kb on + strand at 569.735 kb on + strand at 569.736 kb on - strand at 569.736 kb on - strand at 569.813 kb on + strand, within PFR28_00536 at 569.813 kb on + strand, within PFR28_00536 at 569.813 kb on + strand, within PFR28_00536 at 569.813 kb on + strand, within PFR28_00536 at 569.813 kb on + strand, within PFR28_00536 at 569.813 kb on + strand, within PFR28_00536 at 569.814 kb on - strand, within PFR28_00536 at 569.814 kb on - strand, within PFR28_00536 at 569.814 kb on - strand, within PFR28_00536 at 569.814 kb on - strand, within PFR28_00536 at 569.814 kb on - strand, within PFR28_00536 at 569.814 kb on - strand, within PFR28_00536 at 569.814 kb on - strand, within PFR28_00536 at 569.814 kb on - strand, within PFR28_00536 at 569.814 kb on - strand, within PFR28_00536 at 569.814 kb on - strand, within PFR28_00536 at 569.814 kb on - strand, within PFR28_00536 at 569.814 kb on - strand, within PFR28_00536 at 569.814 kb on - strand, within PFR28_00536 at 570.043 kb on - strand, within PFR28_00536 at 570.245 kb on + strand, within PFR28_00536 at 570.425 kb on + strand at 570.425 kb on + strand at 570.425 kb on + strand at 570.425 kb on + strand at 570.425 kb on + strand at 570.425 kb on + strand at 570.425 kb on + strand at 570.426 kb on - strand at 570.426 kb on - strand at 570.426 kb on - strand at 570.440 kb on + strand at 570.441 kb on - strand at 570.502 kb on - strand, within PFR28_00537 at 570.726 kb on - strand, within PFR28_00537 at 570.785 kb on + strand, within PFR28_00537 at 570.794 kb on + strand, within PFR28_00537 at 570.795 kb on - strand, within PFR28_00537 at 570.925 kb on + strand, within PFR28_00537 at 570.943 kb on + strand, within PFR28_00537 at 571.209 kb on + strand at 571.209 kb on + strand at 571.210 kb on - strand at 571.210 kb on - strand at 571.210 kb on - strand at 571.232 kb on + strand at 571.232 kb on + strand at 571.232 kb on + strand at 571.232 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Valine (C) 10 mM remove 568,925 + PFR28_00534 0.84 -0.4 568,925 + PFR28_00534 0.84 +0.3 568,925 + PFR28_00534 0.84 +0.1 568,925 + PFR28_00534 0.84 -0.1 568,925 + PFR28_00534 0.84 +0.1 568,925 + PFR28_00534 0.84 -1.3 568,925 + PFR28_00534 0.84 +1.0 568,926 - PFR28_00534 0.84 +0.4 568,926 - PFR28_00534 0.84 +0.8 568,926 - PFR28_00534 0.84 +1.2 568,926 - PFR28_00534 0.84 +0.3 568,926 - PFR28_00534 0.84 -0.4 569,166 + PFR28_00535 0.26 +0.6 569,195 + PFR28_00535 0.36 -0.8 569,196 - PFR28_00535 0.36 +1.2 569,447 + -0.5 569,447 + +0.4 569,447 + +0.1 569,448 - +0.6 569,448 - +0.1 569,448 - +0.2 569,448 - -0.8 569,448 - -0.2 569,448 - -0.1 569,472 - +0.5 569,487 + +0.5 569,620 + -0.3 569,641 + -0.3 569,641 + +0.6 569,641 + +0.2 569,641 + +0.5 569,641 + +0.9 569,641 + +0.3 569,641 + +1.5 569,641 + +0.5 569,641 + +1.5 569,641 + +0.6 569,641 + +0.2 569,641 + +0.4 569,641 + +1.2 569,641 + +1.0 569,642 - -0.4 569,642 - +0.5 569,642 - -0.8 569,642 - +0.5 569,642 - -1.3 569,642 - -1.1 569,642 - +0.8 569,642 - +0.5 569,642 - +2.0 569,642 - -0.2 569,642 - -0.5 569,642 - -0.5 569,642 - -0.1 569,642 - +0.0 569,642 - -1.5 569,642 - +0.7 569,642 - +0.1 569,642 - +0.5 569,642 - -0.3 569,642 - -0.2 569,642 - -0.4 569,735 + +2.2 569,735 + +2.5 569,736 - +2.4 569,736 - +2.2 569,813 + PFR28_00536 0.13 +1.6 569,813 + PFR28_00536 0.13 +2.1 569,813 + PFR28_00536 0.13 +2.3 569,813 + PFR28_00536 0.13 +1.9 569,813 + PFR28_00536 0.13 +1.9 569,813 + PFR28_00536 0.13 +0.9 569,814 - PFR28_00536 0.13 +1.9 569,814 - PFR28_00536 0.13 +2.0 569,814 - PFR28_00536 0.13 +2.1 569,814 - PFR28_00536 0.13 +2.5 569,814 - PFR28_00536 0.13 +1.7 569,814 - PFR28_00536 0.13 +2.2 569,814 - PFR28_00536 0.13 +2.1 569,814 - PFR28_00536 0.13 +2.0 569,814 - PFR28_00536 0.13 +2.0 569,814 - PFR28_00536 0.13 +2.2 569,814 - PFR28_00536 0.13 +2.6 569,814 - PFR28_00536 0.13 +2.2 569,814 - PFR28_00536 0.13 +2.1 570,043 - PFR28_00536 0.46 +1.4 570,245 + PFR28_00536 0.75 +3.0 570,425 + +2.6 570,425 + +1.6 570,425 + +2.4 570,425 + +2.2 570,425 + +1.8 570,425 + +1.6 570,425 + +2.2 570,426 - +2.0 570,426 - +1.6 570,426 - +0.9 570,440 + +1.5 570,441 - +1.9 570,502 - PFR28_00537 0.10 +1.9 570,726 - PFR28_00537 0.39 +2.0 570,785 + PFR28_00537 0.47 +1.9 570,794 + PFR28_00537 0.48 +1.0 570,795 - PFR28_00537 0.48 +2.8 570,925 + PFR28_00537 0.65 +2.8 570,943 + PFR28_00537 0.68 +0.9 571,209 + +2.1 571,209 + +1.7 571,210 - -0.5 571,210 - +0.1 571,210 - -0.2 571,232 + +2.1 571,232 + +2.3 571,232 + +3.3 571,232 + +1.4
Or see this region's nucleotide sequence