Strain Fitness in Pseudomonas simiae WCS417 around PS417_16945

Experiment: L-Alanine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPS417_16940 and PS417_16945 are separated by 22 nucleotidesPS417_16945 and PS417_16950 are separated by 84 nucleotidesPS417_16950 and PS417_16955 are separated by 60 nucleotides PS417_16940: PS417_16940 - chemotaxis protein CheY, at 3,694,691 to 3,697,849 _16940 PS417_16945: PS417_16945 - LuxR family transcriptional regulator, at 3,697,872 to 3,698,516 _16945 PS417_16950: PS417_16950 - fimbrial protein, at 3,698,601 to 3,699,191 _16950 PS417_16955: PS417_16955 - pilus assembly protein, at 3,699,252 to 3,700,001 _16955 Position (kb) 3697 3698 3699Strain fitness (log2 ratio) -2 -1 0 1at 3696.879 kb on - strand, within PS417_16940at 3696.954 kb on + strand, within PS417_16940at 3697.351 kb on + strand, within PS417_16940at 3697.352 kb on - strand, within PS417_16940at 3697.462 kb on + strand, within PS417_16940at 3697.463 kb on - strand, within PS417_16940at 3697.888 kb on + strandat 3697.888 kb on + strandat 3698.045 kb on + strand, within PS417_16945at 3698.116 kb on + strand, within PS417_16945at 3698.116 kb on + strand, within PS417_16945at 3698.267 kb on + strand, within PS417_16945at 3698.363 kb on + strand, within PS417_16945at 3698.488 kb on - strandat 3698.514 kb on + strandat 3698.794 kb on + strand, within PS417_16950at 3698.809 kb on + strand, within PS417_16950at 3698.810 kb on - strand, within PS417_16950at 3698.810 kb on - strand, within PS417_16950at 3699.087 kb on - strand, within PS417_16950at 3699.190 kb on - strandat 3699.225 kb on + strandat 3699.225 kb on + strandat 3699.226 kb on - strandat 3699.238 kb on + strandat 3699.251 kb on + strandat 3699.251 kb on + strandat 3699.252 kb on - strandat 3699.409 kb on + strand, within PS417_16955at 3699.409 kb on + strand, within PS417_16955at 3699.409 kb on + strand, within PS417_16955at 3699.410 kb on - strand, within PS417_16955

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Alanine (C)
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3,696,879 - PS417_16940 0.69 +0.1
3,696,954 + PS417_16940 0.72 +0.3
3,697,351 + PS417_16940 0.84 -0.4
3,697,352 - PS417_16940 0.84 -0.3
3,697,462 + PS417_16940 0.88 -0.1
3,697,463 - PS417_16940 0.88 -0.0
3,697,888 + -1.3
3,697,888 + -1.1
3,698,045 + PS417_16945 0.27 -1.1
3,698,116 + PS417_16945 0.38 -1.6
3,698,116 + PS417_16945 0.38 -0.1
3,698,267 + PS417_16945 0.61 +0.0
3,698,363 + PS417_16945 0.76 -2.3
3,698,488 - -0.0
3,698,514 + +0.2
3,698,794 + PS417_16950 0.33 +0.1
3,698,809 + PS417_16950 0.35 -0.5
3,698,810 - PS417_16950 0.35 +0.2
3,698,810 - PS417_16950 0.35 +0.0
3,699,087 - PS417_16950 0.82 +0.6
3,699,190 - -0.0
3,699,225 + -0.4
3,699,225 + +0.0
3,699,226 - +1.6
3,699,238 + -1.8
3,699,251 + -0.2
3,699,251 + -0.0
3,699,252 - -0.5
3,699,409 + PS417_16955 0.21 +0.1
3,699,409 + PS417_16955 0.21 -0.2
3,699,409 + PS417_16955 0.21 -0.4
3,699,410 - PS417_16955 0.21 -0.8

Or see this region's nucleotide sequence