Experiment: L-Alanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_14450 and PS417_14455 are separated by 81 nucleotides PS417_14455 and PS417_14460 are separated by 97 nucleotides PS417_14460 and PS417_14465 overlap by 4 nucleotides
PS417_14450: PS417_14450 - chemotaxis protein, at 3,156,798 to 3,158,792
_14450
PS417_14455: PS417_14455 - polyketide cyclase, at 3,158,874 to 3,159,332
_14455
PS417_14460: PS417_14460 - metal-binding protein, at 3,159,430 to 3,159,876
_14460
PS417_14465: PS417_14465 - membrane protein, at 3,159,873 to 3,160,316
_14465
Position (kb)
3158
3159
3160 Strain fitness (log2 ratio)
-1
0
1 at 3158.386 kb on + strand at 3158.835 kb on + strand at 3158.851 kb on - strand at 3158.851 kb on - strand at 3158.958 kb on + strand, within PS417_14455 at 3158.958 kb on + strand at 3158.958 kb on + strand, within PS417_14455 at 3158.958 kb on + strand, within PS417_14455 at 3159.328 kb on + strand at 3159.330 kb on + strand at 3159.331 kb on - strand at 3159.895 kb on + strand at 3160.128 kb on + strand, within PS417_14465 at 3160.304 kb on - strand at 3160.315 kb on - strand at 3160.315 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Alanine (C) remove 3,158,386 + +1.4 3,158,835 + +0.1 3,158,851 - +0.4 3,158,851 - +0.5 3,158,958 + PS417_14455 0.18 -0.6 3,158,958 + -1.5 3,158,958 + PS417_14455 0.18 -0.8 3,158,958 + PS417_14455 0.18 -0.6 3,159,328 + +1.1 3,159,330 + -1.5 3,159,331 - +0.1 3,159,895 + +0.1 3,160,128 + PS417_14465 0.57 +0.7 3,160,304 - -0.2 3,160,315 - -0.0 3,160,315 - -0.4
Or see this region's nucleotide sequence