Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4394

Experiment: D-Xylose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_4393 and Echvi_4394 are separated by 4 nucleotidesEchvi_4394 and Echvi_4395 are separated by 7 nucleotides Echvi_4393: Echvi_4393 - Glycosyltransferase, at 5,251,772 to 5,252,962 _4393 Echvi_4394: Echvi_4394 - Glycosyltransferase, at 5,252,967 to 5,254,091 _4394 Echvi_4395: Echvi_4395 - Membrane protein involved in the export of O-antigen and teichoic acid, at 5,254,099 to 5,255,352 _4395 Position (kb) 5252 5253 5254 5255Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5251.976 kb on + strand, within Echvi_4393at 5251.976 kb on + strand, within Echvi_4393at 5251.982 kb on + strand, within Echvi_4393at 5251.982 kb on + strand, within Echvi_4393at 5251.989 kb on + strand, within Echvi_4393at 5252.048 kb on + strand, within Echvi_4393at 5252.054 kb on + strand, within Echvi_4393at 5252.054 kb on + strand, within Echvi_4393at 5252.054 kb on + strand, within Echvi_4393at 5252.055 kb on - strand, within Echvi_4393at 5252.055 kb on - strand, within Echvi_4393at 5252.055 kb on - strand, within Echvi_4393at 5252.055 kb on - strand, within Echvi_4393at 5252.055 kb on - strand, within Echvi_4393at 5252.065 kb on + strand, within Echvi_4393at 5252.105 kb on + strand, within Echvi_4393at 5252.106 kb on - strand, within Echvi_4393at 5252.113 kb on + strand, within Echvi_4393at 5252.114 kb on - strand, within Echvi_4393at 5252.117 kb on + strand, within Echvi_4393at 5252.117 kb on + strand, within Echvi_4393at 5252.117 kb on + strand, within Echvi_4393at 5252.117 kb on + strand, within Echvi_4393at 5252.117 kb on + strand, within Echvi_4393at 5252.117 kb on + strand, within Echvi_4393at 5252.117 kb on + strand, within Echvi_4393at 5252.117 kb on + strand, within Echvi_4393at 5252.118 kb on - strand, within Echvi_4393at 5252.122 kb on + strand, within Echvi_4393at 5252.122 kb on + strand, within Echvi_4393at 5252.122 kb on + strand, within Echvi_4393at 5252.129 kb on + strand, within Echvi_4393at 5252.129 kb on + strand, within Echvi_4393at 5252.130 kb on - strand, within Echvi_4393at 5252.134 kb on + strand, within Echvi_4393at 5252.134 kb on + strand, within Echvi_4393at 5252.136 kb on + strand, within Echvi_4393at 5252.136 kb on + strand, within Echvi_4393at 5252.136 kb on + strand, within Echvi_4393at 5252.136 kb on + strand, within Echvi_4393at 5252.140 kb on + strand, within Echvi_4393at 5252.141 kb on - strand, within Echvi_4393at 5252.141 kb on - strand, within Echvi_4393at 5252.172 kb on + strand, within Echvi_4393at 5252.195 kb on + strand, within Echvi_4393at 5252.199 kb on - strand, within Echvi_4393at 5252.205 kb on + strand, within Echvi_4393at 5252.224 kb on + strand, within Echvi_4393at 5252.254 kb on + strand, within Echvi_4393at 5252.279 kb on + strand, within Echvi_4393at 5252.279 kb on + strand, within Echvi_4393at 5252.279 kb on + strand, within Echvi_4393at 5252.280 kb on - strand, within Echvi_4393at 5252.280 kb on - strand, within Echvi_4393at 5252.303 kb on + strand, within Echvi_4393at 5252.303 kb on + strand, within Echvi_4393at 5252.321 kb on + strand, within Echvi_4393at 5252.347 kb on + strand, within Echvi_4393at 5252.347 kb on + strand, within Echvi_4393at 5252.347 kb on + strand, within Echvi_4393at 5252.347 kb on + strand, within Echvi_4393at 5252.347 kb on + strand, within Echvi_4393at 5252.347 kb on + strand, within Echvi_4393at 5252.348 kb on - strand, within Echvi_4393at 5252.348 kb on - strand, within Echvi_4393at 5252.349 kb on + strand, within Echvi_4393at 5252.351 kb on + strand, within Echvi_4393at 5252.351 kb on + strand, within Echvi_4393at 5252.370 kb on - strand, within Echvi_4393at 5252.408 kb on - strand, within Echvi_4393at 5252.417 kb on - strand, within Echvi_4393at 5252.424 kb on - strand, within Echvi_4393at 5252.441 kb on + strand, within Echvi_4393at 5252.441 kb on + strand, within Echvi_4393at 5252.441 kb on + strand, within Echvi_4393at 5252.441 kb on + strand, within Echvi_4393at 5252.441 kb on + strand, within Echvi_4393at 5252.442 kb on - strand, within Echvi_4393at 5252.442 kb on - strand, within Echvi_4393at 5252.442 kb on - strand, within Echvi_4393at 5252.442 kb on - strand, within Echvi_4393at 5252.442 kb on - strand, within Echvi_4393at 5252.444 kb on + strand, within Echvi_4393at 5252.445 kb on - strand, within Echvi_4393at 5252.445 kb on - strand, within Echvi_4393at 5252.445 kb on - strand, within Echvi_4393at 5252.453 kb on - strand, within Echvi_4393at 5252.453 kb on - strand, within Echvi_4393at 5252.461 kb on + strand, within Echvi_4393at 5252.462 kb on - strand, within Echvi_4393at 5252.497 kb on + strand, within Echvi_4393at 5252.500 kb on - strand, within Echvi_4393at 5252.516 kb on - strand, within Echvi_4393at 5252.525 kb on - strand, within Echvi_4393at 5252.555 kb on - strand, within Echvi_4393at 5252.671 kb on + strand, within Echvi_4393at 5252.677 kb on + strand, within Echvi_4393at 5252.677 kb on + strand, within Echvi_4393at 5252.681 kb on + strand, within Echvi_4393at 5252.681 kb on + strand, within Echvi_4393at 5252.682 kb on - strand, within Echvi_4393at 5252.692 kb on + strand, within Echvi_4393at 5252.693 kb on - strand, within Echvi_4393at 5252.714 kb on + strand, within Echvi_4393at 5252.714 kb on + strand, within Echvi_4393at 5252.715 kb on - strand, within Echvi_4393at 5252.740 kb on + strand, within Echvi_4393at 5252.742 kb on + strand, within Echvi_4393at 5252.766 kb on + strand, within Echvi_4393at 5252.766 kb on + strand, within Echvi_4393at 5252.767 kb on - strand, within Echvi_4393at 5252.773 kb on - strand, within Echvi_4393at 5252.776 kb on + strand, within Echvi_4393at 5252.776 kb on + strand, within Echvi_4393at 5252.851 kb on + strandat 5252.867 kb on + strandat 5252.912 kb on - strandat 5252.936 kb on + strandat 5252.936 kb on + strandat 5252.936 kb on + strandat 5252.936 kb on + strandat 5252.937 kb on - strandat 5252.937 kb on - strandat 5252.939 kb on - strandat 5252.956 kb on + strandat 5252.957 kb on - strandat 5252.957 kb on - strandat 5252.965 kb on + strandat 5252.966 kb on - strandat 5252.968 kb on + strandat 5252.969 kb on - strandat 5252.987 kb on + strandat 5252.987 kb on + strandat 5252.987 kb on + strandat 5254.087 kb on - strandat 5254.105 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose (C)
remove
5,251,976 + Echvi_4393 0.17 +0.2
5,251,976 + Echvi_4393 0.17 -0.6
5,251,982 + Echvi_4393 0.18 +0.7
5,251,982 + Echvi_4393 0.18 -0.1
5,251,989 + Echvi_4393 0.18 -1.2
5,252,048 + Echvi_4393 0.23 -0.5
5,252,054 + Echvi_4393 0.24 -0.9
5,252,054 + Echvi_4393 0.24 -0.1
5,252,054 + Echvi_4393 0.24 +1.0
5,252,055 - Echvi_4393 0.24 +3.1
5,252,055 - Echvi_4393 0.24 -1.1
5,252,055 - Echvi_4393 0.24 -0.1
5,252,055 - Echvi_4393 0.24 +0.4
5,252,055 - Echvi_4393 0.24 +1.1
5,252,065 + Echvi_4393 0.25 -0.2
5,252,105 + Echvi_4393 0.28 -0.8
5,252,106 - Echvi_4393 0.28 -0.6
5,252,113 + Echvi_4393 0.29 -1.4
5,252,114 - Echvi_4393 0.29 +0.4
5,252,117 + Echvi_4393 0.29 -0.7
5,252,117 + Echvi_4393 0.29 -1.2
5,252,117 + Echvi_4393 0.29 -0.9
5,252,117 + Echvi_4393 0.29 -1.7
5,252,117 + Echvi_4393 0.29 -1.5
5,252,117 + Echvi_4393 0.29 +0.0
5,252,117 + Echvi_4393 0.29 -0.3
5,252,117 + Echvi_4393 0.29 -0.6
5,252,118 - Echvi_4393 0.29 +1.3
5,252,122 + Echvi_4393 0.29 -1.5
5,252,122 + Echvi_4393 0.29 -1.7
5,252,122 + Echvi_4393 0.29 -2.9
5,252,129 + Echvi_4393 0.30 -1.1
5,252,129 + Echvi_4393 0.30 -0.9
5,252,130 - Echvi_4393 0.30 +0.5
5,252,134 + Echvi_4393 0.30 -0.1
5,252,134 + Echvi_4393 0.30 -0.8
5,252,136 + Echvi_4393 0.31 -1.3
5,252,136 + Echvi_4393 0.31 -2.3
5,252,136 + Echvi_4393 0.31 -1.1
5,252,136 + Echvi_4393 0.31 -1.7
5,252,140 + Echvi_4393 0.31 -1.5
5,252,141 - Echvi_4393 0.31 -0.1
5,252,141 - Echvi_4393 0.31 +0.3
5,252,172 + Echvi_4393 0.34 -1.1
5,252,195 + Echvi_4393 0.36 -0.9
5,252,199 - Echvi_4393 0.36 -0.2
5,252,205 + Echvi_4393 0.36 +0.0
5,252,224 + Echvi_4393 0.38 -2.7
5,252,254 + Echvi_4393 0.40 -1.3
5,252,279 + Echvi_4393 0.43 -0.4
5,252,279 + Echvi_4393 0.43 -0.5
5,252,279 + Echvi_4393 0.43 -0.4
5,252,280 - Echvi_4393 0.43 +0.1
5,252,280 - Echvi_4393 0.43 +0.5
5,252,303 + Echvi_4393 0.45 -1.0
5,252,303 + Echvi_4393 0.45 -0.9
5,252,321 + Echvi_4393 0.46 -1.1
5,252,347 + Echvi_4393 0.48 -0.3
5,252,347 + Echvi_4393 0.48 +0.5
5,252,347 + Echvi_4393 0.48 -0.4
5,252,347 + Echvi_4393 0.48 -0.2
5,252,347 + Echvi_4393 0.48 -0.8
5,252,347 + Echvi_4393 0.48 -1.0
5,252,348 - Echvi_4393 0.48 +0.4
5,252,348 - Echvi_4393 0.48 +0.6
5,252,349 + Echvi_4393 0.48 -1.9
5,252,351 + Echvi_4393 0.49 -0.7
5,252,351 + Echvi_4393 0.49 -2.3
5,252,370 - Echvi_4393 0.50 +0.2
5,252,408 - Echvi_4393 0.53 +0.5
5,252,417 - Echvi_4393 0.54 -0.1
5,252,424 - Echvi_4393 0.55 +0.9
5,252,441 + Echvi_4393 0.56 -0.6
5,252,441 + Echvi_4393 0.56 -0.8
5,252,441 + Echvi_4393 0.56 -1.3
5,252,441 + Echvi_4393 0.56 -0.6
5,252,441 + Echvi_4393 0.56 +0.4
5,252,442 - Echvi_4393 0.56 -0.2
5,252,442 - Echvi_4393 0.56 -1.2
5,252,442 - Echvi_4393 0.56 +0.1
5,252,442 - Echvi_4393 0.56 +0.6
5,252,442 - Echvi_4393 0.56 +0.3
5,252,444 + Echvi_4393 0.56 -0.1
5,252,445 - Echvi_4393 0.57 -0.4
5,252,445 - Echvi_4393 0.57 +0.5
5,252,445 - Echvi_4393 0.57 +0.3
5,252,453 - Echvi_4393 0.57 +1.0
5,252,453 - Echvi_4393 0.57 +3.8
5,252,461 + Echvi_4393 0.58 -1.0
5,252,462 - Echvi_4393 0.58 +0.4
5,252,497 + Echvi_4393 0.61 +1.3
5,252,500 - Echvi_4393 0.61 -0.1
5,252,516 - Echvi_4393 0.62 +0.8
5,252,525 - Echvi_4393 0.63 +0.1
5,252,555 - Echvi_4393 0.66 +0.2
5,252,671 + Echvi_4393 0.75 -0.7
5,252,677 + Echvi_4393 0.76 -1.3
5,252,677 + Echvi_4393 0.76 -1.0
5,252,681 + Echvi_4393 0.76 -1.6
5,252,681 + Echvi_4393 0.76 -0.5
5,252,682 - Echvi_4393 0.76 +0.3
5,252,692 + Echvi_4393 0.77 +0.1
5,252,693 - Echvi_4393 0.77 +0.3
5,252,714 + Echvi_4393 0.79 -0.5
5,252,714 + Echvi_4393 0.79 -0.3
5,252,715 - Echvi_4393 0.79 +0.5
5,252,740 + Echvi_4393 0.81 -1.2
5,252,742 + Echvi_4393 0.81 -0.0
5,252,766 + Echvi_4393 0.83 +0.1
5,252,766 + Echvi_4393 0.83 -1.7
5,252,767 - Echvi_4393 0.84 +0.3
5,252,773 - Echvi_4393 0.84 -0.5
5,252,776 + Echvi_4393 0.84 -1.3
5,252,776 + Echvi_4393 0.84 -1.1
5,252,851 + -0.7
5,252,867 + -1.4
5,252,912 - -0.1
5,252,936 + -0.6
5,252,936 + -0.7
5,252,936 + -1.0
5,252,936 + -0.7
5,252,937 - +0.8
5,252,937 - +1.3
5,252,939 - +0.1
5,252,956 + -0.1
5,252,957 - -0.1
5,252,957 - -1.5
5,252,965 + -0.5
5,252,966 - -1.5
5,252,968 + -1.6
5,252,969 - -0.7
5,252,987 + +0.5
5,252,987 + +0.3
5,252,987 + -0.9
5,254,087 - -0.8
5,254,105 - +0.2

Or see this region's nucleotide sequence